RNA–Protein interactions for RNA: ENST00000464541.5

PTCD3-205, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 5

Gene PTCD3, Length 890 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-205ENST00000464541 KCNH8Q96L42 1107 aa14.05□□□□□ -0.16
PTCD3-205ENST00000464541 NUTM2FA1L443 756 aa14.03□□□□□ -0.16
PTCD3-205ENST00000464541 TSR1Q2NL82 804 aaKnown RBP14.01□□□□□ -0.17
PTCD3-205ENST00000464541 POTEB3A0JP26 581 aa14□□□□□ -0.17
PTCD3-205ENST00000464541 ARHGAP33O14559 1287 aa14□□□□□ -0.17
PTCD3-205ENST00000464541 FCHSD2O94868 740 aa14□□□□□ -0.17
PTCD3-205ENST00000464541 POTEBQ6S5H4 581 aa14□□□□□ -0.17
PTCD3-205ENST00000464541 PPP1R3GB7ZBB8 358 aa13.99□□□□□ -0.17
PTCD3-205ENST00000464541 PTGDRQ13258 359 aa13.98□□□□□ -0.17
PTCD3-205ENST00000464541 HIC1Q14526 733 aa13.97□□□□□ -0.17
PTCD3-205ENST00000464541 CDHR5Q9HBB8 845 aa13.97□□□□□ -0.17
PTCD3-205ENST00000464541 GPR37O15354 613 aa13.96□□□□□ -0.17
PTCD3-205ENST00000464541 POTEGQ6S5H5 508 aa13.96□□□□□ -0.17
PTCD3-205ENST00000464541 ZC3H15Q8WU90 426 aaKnown RBP13.96□□□□□ -0.17
PTCD3-205ENST00000464541 KCNK17Q96T54 332 aa13.96□□□□□ -0.17
PTCD3-205ENST00000464541 NPDC1Q9NQX5 325 aaPredicted RBP13.96□□□□□ -0.17
PTCD3-205ENST00000464541 POTEMA6NI47 508 aa13.95□□□□□ -0.18
PTCD3-205ENST00000464541 RBM27Q9P2N5 1060 aaKnown RBP13.95□□□□□ -0.18
PTCD3-205ENST00000464541 POTEEQ6S8J3 1075 aa13.93□□□□□ -0.18
PTCD3-205ENST00000464541 GNPATO15228 680 aa13.92□□□□□ -0.18
PTCD3-205ENST00000464541 COL9A1P20849 921 aa13.91□□□□□ -0.18
PTCD3-205ENST00000464541 SLC4A5Q9BY07 1137 aa13.91□□□□□ -0.18
PTCD3-205ENST00000464541 ZMYND10O75800 440 aa13.9□□□□□ -0.18
PTCD3-205ENST00000464541 ONECUT3O60422 494 aaPredicted RBP13.89□□□□□ -0.19
PTCD3-205ENST00000464541 PSEN2P49810 448 aa13.89□□□□□ -0.19
PTCD3-205ENST00000464541 PRSS12P56730 875 aa13.89□□□□□ -0.19
PTCD3-205ENST00000464541 AXIN2Q9Y2T1 843 aa13.88□□□□□ -0.19
PTCD3-205ENST00000464541 TPRNQ4KMQ1 711 aa13.87□□□□□ -0.19
PTCD3-205ENST00000464541 BARGINQ6ZT62 677 aa13.87□□□□□ -0.19
PTCD3-205ENST00000464541 ZBED2Q9BTP6 218 aa13.87□□□□□ -0.19
PTCD3-205ENST00000464541 CDCA7LQ96GN5 454 aa13.86□□□□□ -0.19
PTCD3-205ENST00000464541 TK2O00142 265 aa13.85□□□□□ -0.19
PTCD3-205ENST00000464541 LSM11P83369 360 aaKnown RBP eCLIP13.85□□□□□ -0.19
PTCD3-205ENST00000464541 TTC13Q8NBP0 860 aa13.85□□□□□ -0.19
PTCD3-205ENST00000464541 DMRTA1Q5VZB9 504 aa13.84□□□□□ -0.19
PTCD3-205ENST00000464541 TRIM6-TRIM34B2RNG4 842 aa13.83□□□□□ -0.2
PTCD3-205ENST00000464541 MAP2K5Q13163 448 aa13.82□□□□□ -0.2
PTCD3-205ENST00000464541 CDAN1Q8IWY9 1227 aa13.82□□□□□ -0.2
PTCD3-205ENST00000464541 PCDH10Q9P2E7 1040 aa13.82□□□□□ -0.2
PTCD3-205ENST00000464541 PADI6Q6TGC4 694 aa13.81□□□□□ -0.2
PTCD3-205ENST00000464541 MINK1Q8N4C8 1332 aaPredicted RBP13.81□□□□□ -0.2
PTCD3-205ENST00000464541 PACS2Q86VP3 889 aa13.8□□□□□ -0.2
PTCD3-205ENST00000464541 KRTAP3-3Q9BYR6 98 aa13.79□□□□□ -0.2
PTCD3-205ENST00000464541 KRTAP3-2Q9BYR7 98 aa13.79□□□□□ -0.2
PTCD3-205ENST00000464541 VPS9D1Q9Y2B5 631 aa13.79□□□□□ -0.2
PTCD3-205ENST00000464541 PROX2Q3B8N5 592 aa13.78□□□□□ -0.2
PTCD3-205ENST00000464541 RABGEF1Q9UJ41 708 aa13.78□□□□□ -0.2
PTCD3-205ENST00000464541 TSKSQ9UJT2 592 aa13.78□□□□□ -0.2
PTCD3-205ENST00000464541 FECHP22830 423 aa13.77□□□□□ -0.21
PTCD3-205ENST00000464541 KRI1Q8N9T8 703 aaKnown RBP13.77□□□□□ -0.21
PTCD3-205ENST00000464541 NBPF26B4DH59 902 aa13.76□□□□□ -0.21
PTCD3-205ENST00000464541 ADGRD1Q6QNK2 874 aa13.76□□□□□ -0.21
PTCD3-205ENST00000464541 IRF6O14896 467 aa13.75□□□□□ -0.21
PTCD3-205ENST00000464541 OATP04181 439 aa13.74□□□□□ -0.21
PTCD3-205ENST00000464541 KIAA1468Q9P260 1216 aa13.74□□□□□ -0.21
PTCD3-205ENST00000464541 FAM198AQ9UFP1 575 aa13.74□□□□□ -0.21
PTCD3-205ENST00000464541 NBPF3Q9H094 633 aa13.73□□□□□ -0.21
PTCD3-205ENST00000464541 ADGRG1Q9Y653 693 aa13.73□□□□□ -0.21
PTCD3-205ENST00000464541 ANKRD13DQ6ZTN6 518 aa13.72□□□□□ -0.21
PTCD3-205ENST00000464541 RBM46Q8TBY0 533 aaKnown RBP13.71□□□□□ -0.21
PTCD3-205ENST00000464541 AK7Q96M32 723 aa13.71□□□□□ -0.21
PTCD3-205ENST00000464541 BHMG1C9JSJ3 638 aaPredicted RBP13.7□□□□□ -0.22
PTCD3-205ENST00000464541 LAPTM4BQ86VI4 370 aa13.7□□□□□ -0.22
PTCD3-205ENST00000464541 TATDN2Q93075 761 aa13.7□□□□□ -0.22
PTCD3-205ENST00000464541 CCDC102AQ96A19 550 aa13.7□□□□□ -0.22
PTCD3-205ENST00000464541 HRO43593 1189 aa13.69□□□□□ -0.22
PTCD3-205ENST00000464541 PRKCSHP14314 528 aaPredicted RBP13.68□□□□□ -0.22
PTCD3-205ENST00000464541 SLC24A3Q9HC58 644 aa13.68□□□□□ -0.22
PTCD3-205ENST00000464541 PNMA3Q9UL41 463 aa13.68□□□□□ -0.22
PTCD3-205ENST00000464541 NUDT18Q6ZVK8 323 aa13.67□□□□□ -0.22
PTCD3-205ENST00000464541 METTL3Q86U44 580 aaKnown RBP13.67□□□□□ -0.22
PTCD3-205ENST00000464541 EYA1Q99502 592 aa13.67□□□□□ -0.22
PTCD3-205ENST00000464541 PXYLP1Q8TE99 480 aa13.66□□□□□ -0.22
PTCD3-205ENST00000464541 FAM98CQ17RN3 349 aaKnown RBP13.64□□□□□ -0.23
PTCD3-205ENST00000464541 MRPL50Q8N5N7 158 aaKnown RBP13.64□□□□□ -0.23
PTCD3-205ENST00000464541 STAC3Q96MF2 364 aa13.64□□□□□ -0.23
PTCD3-205ENST00000464541 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP13.63□□□□□ -0.23
PTCD3-205ENST00000464541 FAM161AQ3B820 660 aa13.62□□□□□ -0.23
PTCD3-205ENST00000464541 C3orf80F5H4A9 247 aa13.61□□□□□ -0.23
PTCD3-205ENST00000464541 DNAJB2P25686 324 aa13.61□□□□□ -0.23
PTCD3-205ENST00000464541 TRIM66O15016 1216 aa13.6□□□□□ -0.23
PTCD3-205ENST00000464541 AMHR2Q16671 573 aa13.6□□□□□ -0.23
PTCD3-205ENST00000464541 SEPT9Q9UHD8 586 aaPredicted RBP13.6□□□□□ -0.23
PTCD3-205ENST00000464541 RCCD1A6NED2 376 aa13.58□□□□□ -0.24
PTCD3-205ENST00000464541 SMAPO00193 183 aa13.58□□□□□ -0.24
PTCD3-205ENST00000464541 PHOX2BQ99453 314 aa13.56□□□□□ -0.24
PTCD3-205ENST00000464541 TMEM134Q9H6X4 195 aa13.56□□□□□ -0.24
PTCD3-205ENST00000464541 HDGFP51858 240 aaKnown RBP13.55□□□□□ -0.24
PTCD3-205ENST00000464541 ZFRQ96KR1 1074 aaKnown RBP13.55□□□□□ -0.24
PTCD3-205ENST00000464541 GOLGA8CPA6NN73 597 aa13.54□□□□□ -0.24
PTCD3-205ENST00000464541 CLCN1P35523 988 aa13.54□□□□□ -0.24
PTCD3-205ENST00000464541 PDE4DQ08499 809 aa13.52□□□□□ -0.25
PTCD3-205ENST00000464541 DAXXQ9UER7 740 aaPredicted RBP13.52□□□□□ -0.25
PTCD3-205ENST00000464541 SLC4A3P48751 1232 aa13.51□□□□□ -0.25
PTCD3-205ENST00000464541 GPCPD1Q9NPB8 672 aa13.51□□□□□ -0.25
PTCD3-205ENST00000464541 ANKK1Q8NFD2 765 aa13.5□□□□□ -0.25
PTCD3-205ENST00000464541 TMUB1Q9BVT8 246 aa13.5□□□□□ -0.25
PTCD3-205ENST00000464541 MDM2Q00987 491 aaPredicted RBP13.49□□□□□ -0.25
PTCD3-205ENST00000464541 TTLL12Q14166 644 aaPredicted RBP13.48□□□□□ -0.25
PTCD3-205ENST00000464541 SWT1Q5T5J6 900 aaKnown RBP13.47□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 76.7 ms