RNA–Protein interactions for RNA: ENST00000463727.1

PTPRE-205, Transcript of protein tyrosine phosphatase, receptor type E, humanhuman

TSL 1 (best)

Gene PTPRE, Length 3,944 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRE-205ENST00000463727 PLB1Q6P1J6 1458 aa13.68□□□□□ -0.22
PTPRE-205ENST00000463727 DDRGK1Q96HY6 314 aa13.68□□□□□ -0.22
PTPRE-205ENST00000463727 LAS1LQ9Y4W2 734 aaKnown RBP13.66□□□□□ -0.22
PTPRE-205ENST00000463727 NUP153P49790 1475 aaKnown RBP13.66□□□□□ -0.22
PTPRE-205ENST00000463727 EFCAB2Q5VUJ9 269 aa13.65□□□□□ -0.22
PTPRE-205ENST00000463727 NUP160Q12769 1436 aa13.65□□□□□ -0.22
PTPRE-205ENST00000463727 PPM1GO15355 546 aaPredicted RBP13.64□□□□□ -0.23
PTPRE-205ENST00000463727 NEFMP07197 916 aa13.64□□□□□ -0.23
PTPRE-205ENST00000463727 GPATCH8Q9UKJ3 1502 aaKnown RBP13.63□□□□□ -0.23
PTPRE-205ENST00000463727 PLIN1O60240 522 aa13.63□□□□□ -0.23
PTPRE-205ENST00000463727 NBPF1Q3BBV0 1214 aa13.63□□□□□ -0.23
PTPRE-205ENST00000463727 RAPGEF6Q8TEU7 1601 aa13.62□□□□□ -0.23
PTPRE-205ENST00000463727 ARHGEF11O15085 1522 aa13.61□□□□□ -0.23
PTPRE-205ENST00000463727 PDE4AP27815 886 aa13.61□□□□□ -0.23
PTPRE-205ENST00000463727 GCC2Q8IWJ2 1684 aa13.61□□□□□ -0.23
PTPRE-205ENST00000463727 TEX14Q8IWB6 1497 aa13.6□□□□□ -0.23
PTPRE-205ENST00000463727 RGS3P49796 1198 aa13.6□□□□□ -0.23
PTPRE-205ENST00000463727 KDM6BO15054 1643 aa13.6□□□□□ -0.23
PTPRE-205ENST00000463727 SLC24A1O60721 1099 aa13.6□□□□□ -0.23
PTPRE-205ENST00000463727 CDCA7LQ96GN5 454 aa13.59□□□□□ -0.23
PTPRE-205ENST00000463727 GOLGA2Q08379 1002 aa13.58□□□□□ -0.23
PTPRE-205ENST00000463727 DNMT1P26358 1616 aaKnown RBP13.58□□□□□ -0.24
PTPRE-205ENST00000463727 PAK3O75914 559 aaPredicted RBP13.58□□□□□ -0.24
PTPRE-205ENST00000463727 PZPP20742 1482 aa13.57□□□□□ -0.24
PTPRE-205ENST00000463727 CRBNQ96SW2 442 aa13.57□□□□□ -0.24
PTPRE-205ENST00000463727 SPATA31E1Q6ZUB1 1445 aa13.57□□□□□ -0.24
PTPRE-205ENST00000463727 WASHC2CQ9Y4E1 1318 aa13.57□□□□□ -0.24
PTPRE-205ENST00000463727 NEUROD2Q15784 382 aa13.57□□□□□ -0.24
PTPRE-205ENST00000463727 DHX29Q7Z478 1369 aaKnown RBP13.57□□□□□ -0.24
PTPRE-205ENST00000463727 UPF2Q9HAU5 1272 aaKnown RBP13.57□□□□□ -0.24
PTPRE-205ENST00000463727 KANK1Q14678 1352 aa13.56□□□□□ -0.24
PTPRE-205ENST00000463727 SPAG9O60271 1321 aaKnown RBP13.56□□□□□ -0.24
PTPRE-205ENST00000463727 MS4A1P11836 297 aa13.56□□□□□ -0.24
PTPRE-205ENST00000463727 NPM1P06748 294 aaKnown RBP eCLIP13.55□□□□□ -0.24
PTPRE-205ENST00000463727 TNNT2P45379 298 aaPredicted RBP13.54□□□□□ -0.24
PTPRE-205ENST00000463727 DENND4BO75064 1496 aaPredicted RBP13.54□□□□□ -0.24
PTPRE-205ENST00000463727 CCDC146Q8IYE0 955 aa13.53□□□□□ -0.24
PTPRE-205ENST00000463727 CHD1O14646 1710 aa13.53□□□□□ -0.24
PTPRE-205ENST00000463727 ADAMTS8Q9UP79 889 aa13.53□□□□□ -0.24
PTPRE-205ENST00000463727 KDM5BQ9UGL1 1544 aa13.53□□□□□ -0.24
PTPRE-205ENST00000463727 FRAT1Q92837 279 aaPredicted RBP13.52□□□□□ -0.24
PTPRE-205ENST00000463727 RALGAPBQ86X10 1494 aa13.52□□□□□ -0.24
PTPRE-205ENST00000463727 KIF3BO15066 747 aa13.52□□□□□ -0.25
PTPRE-205ENST00000463727 CFAP53Q96M91 514 aa13.51□□□□□ -0.25
PTPRE-205ENST00000463727 ARHGAP5Q13017 1502 aa13.51□□□□□ -0.25
PTPRE-205ENST00000463727 KIF14Q15058 1648 aa13.51□□□□□ -0.25
PTPRE-205ENST00000463727 EIF3AQ14152 1382 aaKnown RBP13.51□□□□□ -0.25
PTPRE-205ENST00000463727 CCDC141Q6ZP82 1450 aa13.51□□□□□ -0.25
PTPRE-205ENST00000463727 ITSN2Q9NZM3 1697 aa13.51□□□□□ -0.25
PTPRE-205ENST00000463727 CENPQQ7L2Z9 268 aaPredicted RBP13.5□□□□□ -0.25
PTPRE-205ENST00000463727 MORC1Q86VD1 984 aa13.49□□□□□ -0.25
PTPRE-205ENST00000463727 ATP10BO94823 1461 aa13.48□□□□□ -0.25
PTPRE-205ENST00000463727 ADGRL2O95490 1459 aa13.48□□□□□ -0.25
PTPRE-205ENST00000463727 ERBINQ96RT1 1412 aa13.48□□□□□ -0.25
PTPRE-205ENST00000463727 APAF1O14727 1248 aa13.47□□□□□ -0.25
PTPRE-205ENST00000463727 BECN1Q14457 450 aa13.47□□□□□ -0.25
PTPRE-205ENST00000463727 ABCA8O94911 1581 aa13.47□□□□□ -0.25
PTPRE-205ENST00000463727 PPP2R1AP30153 589 aa13.47□□□□□ -0.25
PTPRE-205ENST00000463727 BACH2Q9BYV9 841 aa13.47□□□□□ -0.25
PTPRE-205ENST00000463727 UHRF1BP1Q6BDS2 1440 aa13.47□□□□□ -0.25
PTPRE-205ENST00000463727 STAC3Q96MF2 364 aa13.46□□□□□ -0.25
PTPRE-205ENST00000463727 USP35Q9P2H5 1018 aa13.46□□□□□ -0.25
PTPRE-205ENST00000463727 SENP3Q9H4L4 574 aaPredicted RBP13.45□□□□□ -0.26
PTPRE-205ENST00000463727 RNF123Q5XPI4 1314 aa13.45□□□□□ -0.26
PTPRE-205ENST00000463727 FAM161AQ3B820 660 aa13.44□□□□□ -0.26
PTPRE-205ENST00000463727 AFAP1Q8N556 730 aa13.44□□□□□ -0.26
PTPRE-205ENST00000463727 ARHGEF12Q9NZN5 1544 aa13.44□□□□□ -0.26
PTPRE-205ENST00000463727 PLEKHH2Q8IVE3 1493 aa13.43□□□□□ -0.26
PTPRE-205ENST00000463727 E9PSI1 815 aa13.43□□□□□ -0.26
PTPRE-205ENST00000463727 GGT6Q6P531 493 aa13.42□□□□□ -0.26
PTPRE-205ENST00000463727 FTSJ3Q8IY81 847 aaKnown RBP13.42□□□□□ -0.26
PTPRE-205ENST00000463727 RTN4Q9NQC3 1192 aaKnown RBP13.42□□□□□ -0.26
PTPRE-205ENST00000463727 LRPPRCP42704 1394 aaKnown RBP13.42□□□□□ -0.26
PTPRE-205ENST00000463727 SHANK2Q9UPX8 1470 aa13.42□□□□□ -0.26
PTPRE-205ENST00000463727 SLC4A3P48751 1232 aa13.42□□□□□ -0.26
PTPRE-205ENST00000463727 PARD3Q8TEW0 1356 aa13.42□□□□□ -0.26
PTPRE-205ENST00000463727 CENPJQ9HC77 1338 aaPredicted RBP13.42□□□□□ -0.26
PTPRE-205ENST00000463727 PRAG1Q86YV5 1406 aa13.41□□□□□ -0.26
PTPRE-205ENST00000463727 DISP3Q9P2K9 1392 aa13.41□□□□□ -0.26
PTPRE-205ENST00000463727 PRKCSHP14314 528 aaPredicted RBP13.41□□□□□ -0.26
PTPRE-205ENST00000463727 STAG3Q9UJ98 1225 aa13.41□□□□□ -0.26
PTPRE-205ENST00000463727 PER1O15534 1290 aaPredicted RBP13.41□□□□□ -0.26
PTPRE-205ENST00000463727 ERCC6L2Q5T890 1561 aa13.41□□□□□ -0.26
PTPRE-205ENST00000463727 TRAK1Q9UPV9 953 aa13.4□□□□□ -0.26
PTPRE-205ENST00000463727 ADCY10Q96PN6 1610 aa13.4□□□□□ -0.26
PTPRE-205ENST00000463727 TESK2Q96S53 571 aa13.39□□□□□ -0.27
PTPRE-205ENST00000463727 U2SURPO15042 1029 aaKnown RBP13.39□□□□□ -0.27
PTPRE-205ENST00000463727 CFAP70Q5T0N1 1121 aa13.39□□□□□ -0.27
PTPRE-205ENST00000463727 FAM135AQ9P2D6 1515 aa13.39□□□□□ -0.27
PTPRE-205ENST00000463727 NGEFQ8N5V2 710 aa13.38□□□□□ -0.27
PTPRE-205ENST00000463727 SHROOM2Q13796 1616 aa13.38□□□□□ -0.27
PTPRE-205ENST00000463727 U2AF1L5P0DN76 240 aaPredicted RBP13.38□□□□□ -0.27
PTPRE-205ENST00000463727 U2AF1Q01081 240 aaKnown RBP eCLIP13.38□□□□□ -0.27
PTPRE-205ENST00000463727 RRP7AQ9Y3A4 280 aaKnown RBP13.38□□□□□ -0.27
PTPRE-205ENST00000463727 CGNL1Q0VF96 1302 aa13.38□□□□□ -0.27
PTPRE-205ENST00000463727 MAPK8IP3Q9UPT6 1336 aa13.38□□□□□ -0.27
PTPRE-205ENST00000463727 C20orf194Q5TEA3 1177 aa13.37□□□□□ -0.27
PTPRE-205ENST00000463727 SAFB2Q14151 953 aaKnown RBP eCLIP13.37□□□□□ -0.27
PTPRE-205ENST00000463727 SKAP1Q86WV1 359 aa13.37□□□□□ -0.27
PTPRE-205ENST00000463727 COG6Q9Y2V7 657 aa13.36□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms