RNA–Protein interactions for RNA: ENST00000463478.1

HERC4-208, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase 4, humanhuman

TSL 3

Gene HERC4, Length 546 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC4-208ENST00000463478 FAM205CA6NFA0 338 aa9.29□□□□□ -0.92
HERC4-208ENST00000463478 NUDT7P0C024 238 aa9.29□□□□□ -0.92
HERC4-208ENST00000463478 ARSIQ5FYB1 569 aa9.29□□□□□ -0.92
HERC4-208ENST00000463478 KHSRPQ92945 711 aaKnown RBP eCLIP9.29□□□□□ -0.92
HERC4-208ENST00000463478 MAP2K5Q13163 448 aa9.28□□□□□ -0.92
HERC4-208ENST00000463478 PTGDRQ13258 359 aa9.28□□□□□ -0.92
HERC4-208ENST00000463478 TYW1BQ6NUM6 668 aa9.28□□□□□ -0.92
HERC4-208ENST00000463478 CDHR5Q9HBB8 845 aa9.28□□□□□ -0.92
HERC4-208ENST00000463478 KDM4FA0A1W2PPD8 638 aa9.27□□□□□ -0.93
HERC4-208ENST00000463478 POTEB3A0JP26 581 aa9.27□□□□□ -0.93
HERC4-208ENST00000463478 TRIM66O15016 1216 aa9.27□□□□□ -0.93
HERC4-208ENST00000463478 FECHP22830 423 aa9.27□□□□□ -0.93
HERC4-208ENST00000463478 POTEBQ6S5H4 581 aa9.27□□□□□ -0.93
HERC4-208ENST00000463478 JPH4Q96JJ6 628 aa9.27□□□□□ -0.93
HERC4-208ENST00000463478 MINK1Q8N4C8 1332 aaPredicted RBP9.27□□□□□ -0.93
HERC4-208ENST00000463478 CCDC102AQ96A19 550 aa9.26□□□□□ -0.93
HERC4-208ENST00000463478 TSR1Q2NL82 804 aaKnown RBP9.25□□□□□ -0.93
HERC4-208ENST00000463478 ZNF454Q8N9F8 522 aa9.25□□□□□ -0.93
HERC4-208ENST00000463478 GPBP1L1Q9HC44 474 aaPredicted RBP9.25□□□□□ -0.93
HERC4-208ENST00000463478 ERBB3P21860 1342 aa9.25□□□□□ -0.93
HERC4-208ENST00000463478 IRF6O14896 467 aa9.24□□□□□ -0.93
HERC4-208ENST00000463478 FOSBP53539 338 aa9.24□□□□□ -0.93
HERC4-208ENST00000463478 PDE4DQ08499 809 aa9.24□□□□□ -0.93
HERC4-208ENST00000463478 FBXW7Q969H0 707 aa9.24□□□□□ -0.93
HERC4-208ENST00000463478 VARS2Q5ST30 1063 aaKnown RBP9.22□□□□□ -0.93
HERC4-208ENST00000463478 ZDHHC16Q969W1 377 aa9.21□□□□□ -0.94
HERC4-208ENST00000463478 NPDC1Q9NQX5 325 aaPredicted RBP9.21□□□□□ -0.94
HERC4-208ENST00000463478 KRTAP3-3Q9BYR6 98 aa9.2□□□□□ -0.94
HERC4-208ENST00000463478 KRTAP3-2Q9BYR7 98 aa9.2□□□□□ -0.94
HERC4-208ENST00000463478 KDM4CQ9H3R0 1056 aa9.2□□□□□ -0.94
HERC4-208ENST00000463478 C6orf132Q5T0Z8 1188 aa9.19□□□□□ -0.94
HERC4-208ENST00000463478 LHX6Q9UPM6 363 aa9.19□□□□□ -0.94
HERC4-208ENST00000463478 GTF3C3Q9Y5Q9 886 aa9.19□□□□□ -0.94
HERC4-208ENST00000463478 ADAM33Q9BZ11 813 aa9.18□□□□□ -0.94
HERC4-208ENST00000463478 AMHR2Q16671 573 aa9.16□□□□□ -0.94
HERC4-208ENST00000463478 PPP4R3BQ5MIZ7 849 aa9.16□□□□□ -0.94
HERC4-208ENST00000463478 TTLL12Q14166 644 aaPredicted RBP9.15□□□□□ -0.94
HERC4-208ENST00000463478 ZNF687Q8N1G0 1237 aa9.15□□□□□ -0.94
HERC4-208ENST00000463478 CERKQ8TCT0 537 aa9.15□□□□□ -0.94
HERC4-208ENST00000463478 PSDA5PKW4 1024 aaPredicted RBP9.14□□□□□ -0.95
HERC4-208ENST00000463478 PADI6Q6TGC4 694 aa9.14□□□□□ -0.95
HERC4-208ENST00000463478 PARP9Q8IXQ6 854 aa9.14□□□□□ -0.95
HERC4-208ENST00000463478 IL27Q8NEV9 243 aa9.14□□□□□ -0.95
HERC4-208ENST00000463478 FAM161AQ3B820 660 aa9.12□□□□□ -0.95
HERC4-208ENST00000463478 DAXXQ9UER7 740 aaPredicted RBP9.11□□□□□ -0.95
HERC4-208ENST00000463478 PRSS12P56730 875 aa9.09□□□□□ -0.95
HERC4-208ENST00000463478 CDCA7LQ96GN5 454 aa9.09□□□□□ -0.95
HERC4-208ENST00000463478 FAM117AQ9C073 453 aa9.09□□□□□ -0.95
HERC4-208ENST00000463478 BCL2L12Q9HB09 334 aa9.09□□□□□ -0.95
HERC4-208ENST00000463478 RBM27Q9P2N5 1060 aaKnown RBP9.09□□□□□ -0.95
HERC4-208ENST00000463478 COL9A1P20849 921 aa9.08□□□□□ -0.96
HERC4-208ENST00000463478 PTPREP23469 700 aa9.08□□□□□ -0.96
HERC4-208ENST00000463478 GIGYF2Q6Y7W6 1299 aaKnown RBP9.08□□□□□ -0.96
HERC4-208ENST00000463478 PHOX2BQ99453 314 aa9.08□□□□□ -0.96
HERC4-208ENST00000463478 ADGRG1Q9Y653 693 aa9.08□□□□□ -0.96
HERC4-208ENST00000463478 OATP04181 439 aa9.07□□□□□ -0.96
HERC4-208ENST00000463478 MDM2Q00987 491 aaPredicted RBP9.07□□□□□ -0.96
HERC4-208ENST00000463478 METTL3Q86U44 580 aaKnown RBP9.07□□□□□ -0.96
HERC4-208ENST00000463478 PPP1R3GB7ZBB8 358 aa9.06□□□□□ -0.96
HERC4-208ENST00000463478 CLCN1P35523 988 aa9.06□□□□□ -0.96
HERC4-208ENST00000463478 PBX2P40425 430 aa9.06□□□□□ -0.96
HERC4-208ENST00000463478 TTC13Q8NBP0 860 aa9.06□□□□□ -0.96
HERC4-208ENST00000463478 NLRP7Q8WX94 980 aa9.06□□□□□ -0.96
HERC4-208ENST00000463478 DDRGK1Q96HY6 314 aa9.06□□□□□ -0.96
HERC4-208ENST00000463478 REPIN1Q9BWE0 567 aaKnown RBP9.06□□□□□ -0.96
HERC4-208ENST00000463478 PXYLP1Q8TE99 480 aa9.05□□□□□ -0.96
HERC4-208ENST00000463478 GPCPD1Q9NPB8 672 aa9.05□□□□□ -0.96
HERC4-208ENST00000463478 KCNK17Q96T54 332 aa9.04□□□□□ -0.96
HERC4-208ENST00000463478 TIMELESSQ9UNS1 1208 aa9.04□□□□□ -0.96
HERC4-208ENST00000463478 PLEKHG3A1L390 1219 aa9.03□□□□□ -0.96
HERC4-208ENST00000463478 MS4A1P11836 297 aa9.03□□□□□ -0.96
HERC4-208ENST00000463478 RBM46Q8TBY0 533 aaKnown RBP9.03□□□□□ -0.96
HERC4-208ENST00000463478 KCNH8Q96L42 1107 aa9.03□□□□□ -0.96
HERC4-208ENST00000463478 FAM198AQ9UFP1 575 aa9.03□□□□□ -0.96
HERC4-208ENST00000463478 POTEEQ6S8J3 1075 aa9.02□□□□□ -0.97
HERC4-208ENST00000463478 TMUB1Q9BVT8 246 aa9.02□□□□□ -0.97
HERC4-208ENST00000463478 TSKSQ9UJT2 592 aa9.02□□□□□ -0.97
HERC4-208ENST00000463478 LSM11P83369 360 aaKnown RBP eCLIP9.01□□□□□ -0.97
HERC4-208ENST00000463478 TRIM6-TRIM34B2RNG4 842 aa9□□□□□ -0.97
HERC4-208ENST00000463478 SSTR3P32745 418 aaPredicted RBP9□□□□□ -0.97
HERC4-208ENST00000463478 NBPF26B4DH59 902 aa8.99□□□□□ -0.97
HERC4-208ENST00000463478 PROX2Q3B8N5 592 aa8.99□□□□□ -0.97
HERC4-208ENST00000463478 NUDT18Q6ZVK8 323 aa8.99□□□□□ -0.97
HERC4-208ENST00000463478 AXIN2Q9Y2T1 843 aa8.99□□□□□ -0.97
HERC4-208ENST00000463478 C14orf37Q86TY3 774 aa8.98□□□□□ -0.97
HERC4-208ENST00000463478 PACS2Q86VP3 889 aa8.98□□□□□ -0.97
HERC4-208ENST00000463478 FAM217BQ9NTX9 383 aaPredicted RBP8.98□□□□□ -0.97
HERC4-208ENST00000463478 PNMA3Q9UL41 463 aa8.98□□□□□ -0.97
HERC4-208ENST00000463478 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP8.97□□□□□ -0.97
HERC4-208ENST00000463478 RCCD1A6NED2 376 aa8.97□□□□□ -0.97
HERC4-208ENST00000463478 ARHGAP33O14559 1287 aa8.97□□□□□ -0.97
HERC4-208ENST00000463478 PSEN2P49810 448 aa8.97□□□□□ -0.97
HERC4-208ENST00000463478 ERICH6Q7L0X2 663 aa8.97□□□□□ -0.97
HERC4-208ENST00000463478 TATDN2Q93075 761 aa8.97□□□□□ -0.97
HERC4-208ENST00000463478 C3orf80F5H4A9 247 aa8.96□□□□□ -0.98
HERC4-208ENST00000463478 ANKRD13DQ6ZTN6 518 aa8.96□□□□□ -0.98
HERC4-208ENST00000463478 EYA1Q99502 592 aa8.96□□□□□ -0.98
HERC4-208ENST00000463478 SMAPO00193 183 aa8.95□□□□□ -0.98
HERC4-208ENST00000463478 BEGAINQ9BUH8 593 aa8.95□□□□□ -0.98
HERC4-208ENST00000463478 ZBED2Q9BTP6 218 aa8.94□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms