RNA–Protein interactions for RNA: ENST00000462899.1

SMC3-202, Transcript of structural maintenance of chromosomes 3, humanhuman

TSL 5

Gene SMC3, Length 777 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC3-202ENST00000462899 ADGBQ8N7X0 1667 aa12.93□□□□□ -0.34
SMC3-202ENST00000462899 ALKQ9UM73 1620 aa12.93□□□□□ -0.34
SMC3-202ENST00000462899 NCKAP5LQ9HCH0 1330 aa12.92□□□□□ -0.34
SMC3-202ENST00000462899 CACNB1Q02641 598 aaPredicted RBP12.91□□□□□ -0.34
SMC3-202ENST00000462899 PKD2Q13563 968 aa12.91□□□□□ -0.34
SMC3-202ENST00000462899 ESF1Q9H501 851 aaKnown RBP12.91□□□□□ -0.34
SMC3-202ENST00000462899 GPATCH8Q9UKJ3 1502 aaKnown RBP12.91□□□□□ -0.34
SMC3-202ENST00000462899 MYT1LQ9UL68 1186 aa12.9□□□□□ -0.34
SMC3-202ENST00000462899 ATP1B4Q9UN42 357 aaPredicted RBP12.9□□□□□ -0.34
SMC3-202ENST00000462899 A2MP01023 1474 aa12.9□□□□□ -0.34
SMC3-202ENST00000462899 KIAA1107Q9UPP5 1409 aa12.89□□□□□ -0.35
SMC3-202ENST00000462899 UBAP1LF5GYI3 381 aa12.89□□□□□ -0.35
SMC3-202ENST00000462899 A2ML1A8K2U0 1454 aa12.89□□□□□ -0.35
SMC3-202ENST00000462899 FYCO1Q9BQS8 1478 aa12.89□□□□□ -0.35
SMC3-202ENST00000462899 CPS1P31327 1500 aa12.88□□□□□ -0.35
SMC3-202ENST00000462899 VWDEQ8N2E2 1590 aa12.87□□□□□ -0.35
SMC3-202ENST00000462899 PLEKHH2Q8IVE3 1493 aa12.85□□□□□ -0.35
SMC3-202ENST00000462899 STRCP1A6NGW2 1772 aa12.85□□□□□ -0.35
SMC3-202ENST00000462899 UBTFP17480 764 aaKnown RBP12.85□□□□□ -0.35
SMC3-202ENST00000462899 SPAG9O60271 1321 aaKnown RBP12.85□□□□□ -0.35
SMC3-202ENST00000462899 DEPDC5O75140 1603 aa12.84□□□□□ -0.35
SMC3-202ENST00000462899 FAM135AQ9P2D6 1515 aa12.84□□□□□ -0.35
SMC3-202ENST00000462899 SHANK2Q9UPX8 1470 aa12.84□□□□□ -0.35
SMC3-202ENST00000462899 HSPA1LP34931 641 aa12.83□□□□□ -0.36
SMC3-202ENST00000462899 TIAM1Q13009 1591 aa12.82□□□□□ -0.36
SMC3-202ENST00000462899 SPINK5Q9NQ38 1064 aaPredicted RBP12.82□□□□□ -0.36
SMC3-202ENST00000462899 MBD5Q9P267 1494 aa12.82□□□□□ -0.36
SMC3-202ENST00000462899 MED14O60244 1454 aa12.81□□□□□ -0.36
SMC3-202ENST00000462899 PZPP20742 1482 aa12.81□□□□□ -0.36
SMC3-202ENST00000462899 HNRNPMP52272 730 aaKnown RBP eCLIP12.81□□□□□ -0.36
SMC3-202ENST00000462899 IQGAP1P46940 1657 aa12.8□□□□□ -0.36
SMC3-202ENST00000462899 KDM5DQ9BY66 1539 aa12.8□□□□□ -0.36
SMC3-202ENST00000462899 SAMD1Q6SPF0 538 aaPredicted RBP12.8□□□□□ -0.36
SMC3-202ENST00000462899 SYNMO15061 1565 aa12.8□□□□□ -0.36
SMC3-202ENST00000462899 RNF17Q9BXT8 1623 aaKnown RBP12.79□□□□□ -0.36
SMC3-202ENST00000462899 ZC3H13Q5T200 1668 aaKnown RBP12.79□□□□□ -0.36
SMC3-202ENST00000462899 RTEL1-TNFRSF6BF6WH68 1400 aa12.79□□□□□ -0.36
SMC3-202ENST00000462899 XIRP1Q702N8 1843 aaKnown RBP12.77□□□□□ -0.37
SMC3-202ENST00000462899 ZNF777Q9ULD5 760 aaPredicted RBP12.77□□□□□ -0.37
SMC3-202ENST00000462899 CAPN15O75808 1086 aa12.76□□□□□ -0.37
SMC3-202ENST00000462899 GGT6Q6P531 493 aa12.76□□□□□ -0.37
SMC3-202ENST00000462899 TNRQ92752 1358 aa12.76□□□□□ -0.37
SMC3-202ENST00000462899 TOM1O60784 492 aa12.75□□□□□ -0.37
SMC3-202ENST00000462899 DHX29Q7Z478 1369 aaKnown RBP12.75□□□□□ -0.37
SMC3-202ENST00000462899 NLRP1Q9C000 1473 aa12.75□□□□□ -0.37
SMC3-202ENST00000462899 UGGT1Q9NYU2 1555 aa12.75□□□□□ -0.37
SMC3-202ENST00000462899 LRRC7Q96NW7 1537 aa12.74□□□□□ -0.37
SMC3-202ENST00000462899 CCNB3Q8WWL7 1395 aa12.74□□□□□ -0.37
SMC3-202ENST00000462899 EHBP1L1Q8N3D4 1523 aa12.73□□□□□ -0.37
SMC3-202ENST00000462899 NPHP4O75161 1426 aaPredicted RBP12.73□□□□□ -0.37
SMC3-202ENST00000462899 PIP4K2BP78356 416 aa12.73□□□□□ -0.37
SMC3-202ENST00000462899 CFDP1Q9UEE9 299 aaPredicted RBP12.73□□□□□ -0.37
SMC3-202ENST00000462899 ATF5Q9Y2D1 282 aaPredicted RBP12.73□□□□□ -0.37
SMC3-202ENST00000462899 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP12.72□□□□□ -0.37
SMC3-202ENST00000462899 FBXO31Q5XUX0 539 aaPredicted RBP12.72□□□□□ -0.37
SMC3-202ENST00000462899 MIA2Q96PC5 1412 aa12.71□□□□□ -0.37
SMC3-202ENST00000462899 UBR1Q8IWV7 1749 aa12.71□□□□□ -0.37
SMC3-202ENST00000462899 ZNF644Q9H582 1327 aaPredicted RBP12.71□□□□□ -0.37
SMC3-202ENST00000462899 CCDC141Q6ZP82 1450 aa12.71□□□□□ -0.38
SMC3-202ENST00000462899 CEP162Q5TB80 1403 aa12.7□□□□□ -0.38
SMC3-202ENST00000462899 MROH1Q8NDA8 1641 aa12.7□□□□□ -0.38
SMC3-202ENST00000462899 ARHGEF5Q12774 1597 aa12.69□□□□□ -0.38
SMC3-202ENST00000462899 APLP2Q06481 763 aa12.69□□□□□ -0.38
SMC3-202ENST00000462899 ABCC3O15438 1527 aa12.68□□□□□ -0.38
SMC3-202ENST00000462899 CAMSAP2Q08AD1 1489 aa12.68□□□□□ -0.38
SMC3-202ENST00000462899 EIF2AK4Q9P2K8 1649 aaKnown RBP12.68□□□□□ -0.38
SMC3-202ENST00000462899 ANKLE2Q86XL3 938 aa12.67□□□□□ -0.38
SMC3-202ENST00000462899 RGS17Q9UGC6 210 aaPredicted RBP12.67□□□□□ -0.38
SMC3-202ENST00000462899 MTUS2Q5JR59 1369 aa12.67□□□□□ -0.38
SMC3-202ENST00000462899 CEP152O94986 1710 aa12.66□□□□□ -0.38
SMC3-202ENST00000462899 MAST1Q9Y2H9 1570 aa12.66□□□□□ -0.38
SMC3-202ENST00000462899 ERVK-7P63135 1459 aa12.65□□□□□ -0.38
SMC3-202ENST00000462899 THEMISQ8N1K5 641 aaPredicted RBP12.65□□□□□ -0.38
SMC3-202ENST00000462899 NCOA2Q15596 1464 aa12.65□□□□□ -0.38
SMC3-202ENST00000462899 ARHGAP23Q9P227 1491 aa12.65□□□□□ -0.38
SMC3-202ENST00000462899 CFAP65Q6ZU64 1925 aaKnown RBP12.64□□□□□ -0.39
SMC3-202ENST00000462899 SLIT1O75093 1534 aa12.64□□□□□ -0.39
SMC3-202ENST00000462899 KIF3BO15066 747 aa12.64□□□□□ -0.39
SMC3-202ENST00000462899 WASHC2CQ9Y4E1 1318 aa12.62□□□□□ -0.39
SMC3-202ENST00000462899 SCAF11Q99590 1463 aaKnown RBP12.61□□□□□ -0.39
SMC3-202ENST00000462899 KDM5AP29375 1690 aaKnown RBP12.61□□□□□ -0.39
SMC3-202ENST00000462899 SETD1AO15047 1707 aaKnown RBP12.6□□□□□ -0.39
SMC3-202ENST00000462899 MAP3K1Q13233 1512 aa12.59□□□□□ -0.39
SMC3-202ENST00000462899 ROBO1Q9Y6N7 1651 aa12.59□□□□□ -0.39
SMC3-202ENST00000462899 ATXN8OSP0DMR3 200 aa12.59□□□□□ -0.39
SMC3-202ENST00000462899 ZNF219Q9P2Y4 722 aaPredicted RBP12.59□□□□□ -0.39
SMC3-202ENST00000462899 PRDM15P57071 1507 aaPredicted RBP12.58□□□□□ -0.4
SMC3-202ENST00000462899 FAM135BQ49AJ0 1406 aa12.58□□□□□ -0.4
SMC3-202ENST00000462899 PIK3C2BO00750 1634 aa12.58□□□□□ -0.4
SMC3-202ENST00000462899 ABCB7O75027 752 aa12.57□□□□□ -0.4
SMC3-202ENST00000462899 RSPH4AQ5TD94 716 aa12.57□□□□□ -0.4
SMC3-202ENST00000462899 NWD1Q149M9 1564 aa12.56□□□□□ -0.4
SMC3-202ENST00000462899 ARHGAP31Q2M1Z3 1444 aa12.55□□□□□ -0.4
SMC3-202ENST00000462899 CROCC2H7BZ55 1655 aa12.54□□□□□ -0.4
SMC3-202ENST00000462899 TET3O43151 1660 aa12.54□□□□□ -0.4
SMC3-202ENST00000462899 LTKP29376 864 aa12.54□□□□□ -0.4
SMC3-202ENST00000462899 POTEAQ6S8J7 498 aa12.54□□□□□ -0.4
SMC3-202ENST00000462899 DUOX2Q9NRD8 1548 aa12.52□□□□□ -0.4
SMC3-202ENST00000462899 DSG3P32926 999 aa12.52□□□□□ -0.41
SMC3-202ENST00000462899 LRRC9Q6ZRR7 1453 aa12.51□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms