RNA–Protein interactions for RNA: ENST00000462429.1

VPS41-210, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 3

Gene VPS41, Length 347 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-210ENST00000462429 CDHR5Q9HBB8 845 aa9.11□□□□□ -0.95
VPS41-210ENST00000462429 MINK1Q8N4C8 1332 aaPredicted RBP9.1□□□□□ -0.95
VPS41-210ENST00000462429 C6orf132Q5T0Z8 1188 aa9.1□□□□□ -0.95
VPS41-210ENST00000462429 CERKQ8TCT0 537 aa9.1□□□□□ -0.95
VPS41-210ENST00000462429 ADAM33Q9BZ11 813 aa9.09□□□□□ -0.95
VPS41-210ENST00000462429 NPDC1Q9NQX5 325 aaPredicted RBP9.08□□□□□ -0.96
VPS41-210ENST00000462429 IRF6O14896 467 aa9.06□□□□□ -0.96
VPS41-210ENST00000462429 FECHP22830 423 aa9.06□□□□□ -0.96
VPS41-210ENST00000462429 NEUROD2Q15784 382 aa9.05□□□□□ -0.96
VPS41-210ENST00000462429 CCDC102AQ96A19 550 aa9.05□□□□□ -0.96
VPS41-210ENST00000462429 BCL2L12Q9HB09 334 aa9.05□□□□□ -0.96
VPS41-210ENST00000462429 TRIM66O15016 1216 aa9.04□□□□□ -0.96
VPS41-210ENST00000462429 PTPREP23469 700 aa9.04□□□□□ -0.96
VPS41-210ENST00000462429 BRPF1P55201 1214 aaPredicted RBP9.04□□□□□ -0.96
VPS41-210ENST00000462429 KCNH8Q96L42 1107 aa9.03□□□□□ -0.96
VPS41-210ENST00000462429 RBM27Q9P2N5 1060 aaKnown RBP9.03□□□□□ -0.96
VPS41-210ENST00000462429 ERBB3P21860 1342 aa9.03□□□□□ -0.96
VPS41-210ENST00000462429 ST18O60284 1047 aa9.02□□□□□ -0.97
VPS41-210ENST00000462429 PDE4DQ08499 809 aa9.01□□□□□ -0.97
VPS41-210ENST00000462429 PPP1R3GB7ZBB8 358 aa9□□□□□ -0.97
VPS41-210ENST00000462429 EMP3P54852 163 aa9□□□□□ -0.97
VPS41-210ENST00000462429 PRSS12P56730 875 aa9□□□□□ -0.97
VPS41-210ENST00000462429 VARS2Q5ST30 1063 aaKnown RBP8.99□□□□□ -0.97
VPS41-210ENST00000462429 PADI6Q6TGC4 694 aa8.99□□□□□ -0.97
VPS41-210ENST00000462429 FAM163AQ96GL9 167 aaPredicted RBP8.99□□□□□ -0.97
VPS41-210ENST00000462429 CDCA7LQ96GN5 454 aa8.99□□□□□ -0.97
VPS41-210ENST00000462429 COL9A1P20849 921 aa8.98□□□□□ -0.97
VPS41-210ENST00000462429 AMHR2Q16671 573 aa8.98□□□□□ -0.97
VPS41-210ENST00000462429 OATP04181 439 aa8.97□□□□□ -0.97
VPS41-210ENST00000462429 TTC13Q8NBP0 860 aa8.97□□□□□ -0.97
VPS41-210ENST00000462429 KCNK17Q96T54 332 aa8.97□□□□□ -0.97
VPS41-210ENST00000462429 MARVELD3Q96A59 401 aa8.96□□□□□ -0.98
VPS41-210ENST00000462429 TMEM132AQ24JP5 1023 aa8.95□□□□□ -0.98
VPS41-210ENST00000462429 GPBP1L1Q9HC44 474 aaPredicted RBP8.95□□□□□ -0.98
VPS41-210ENST00000462429 DAXXQ9UER7 740 aaPredicted RBP8.95□□□□□ -0.98
VPS41-210ENST00000462429 FAM205CA6NFA0 338 aa8.94□□□□□ -0.98
VPS41-210ENST00000462429 ARHGAP33O14559 1287 aa8.94□□□□□ -0.98
VPS41-210ENST00000462429 TTLL12Q14166 644 aaPredicted RBP8.94□□□□□ -0.98
VPS41-210ENST00000462429 KDM4CQ9H3R0 1056 aa8.94□□□□□ -0.98
VPS41-210ENST00000462429 ADGRG1Q9Y653 693 aa8.94□□□□□ -0.98
VPS41-210ENST00000462429 PBX2P40425 430 aa8.93□□□□□ -0.98
VPS41-210ENST00000462429 METTL3Q86U44 580 aaKnown RBP8.93□□□□□ -0.98
VPS41-210ENST00000462429 RBM46Q8TBY0 533 aaKnown RBP8.93□□□□□ -0.98
VPS41-210ENST00000462429 TRIM6-TRIM34B2RNG4 842 aa8.92□□□□□ -0.98
VPS41-210ENST00000462429 ONECUT3O60422 494 aaPredicted RBP8.92□□□□□ -0.98
VPS41-210ENST00000462429 FAM161AQ3B820 660 aa8.92□□□□□ -0.98
VPS41-210ENST00000462429 PACS2Q86VP3 889 aa8.92□□□□□ -0.98
VPS41-210ENST00000462429 PARP9Q8IXQ6 854 aa8.92□□□□□ -0.98
VPS41-210ENST00000462429 ZNF687Q8N1G0 1237 aa8.92□□□□□ -0.98
VPS41-210ENST00000462429 NBPF26B4DH59 902 aa8.91□□□□□ -0.98
VPS41-210ENST00000462429 CLCN1P35523 988 aa8.91□□□□□ -0.98
VPS41-210ENST00000462429 PSEN2P49810 448 aa8.91□□□□□ -0.98
VPS41-210ENST00000462429 PXYLP1Q8TE99 480 aa8.91□□□□□ -0.98
VPS41-210ENST00000462429 TSKSQ9UJT2 592 aa8.91□□□□□ -0.98
VPS41-210ENST00000462429 FAM198AQ9UFP1 575 aa8.9□□□□□ -0.98
VPS41-210ENST00000462429 MDM2Q00987 491 aaPredicted RBP8.89□□□□□ -0.99
VPS41-210ENST00000462429 PROX2Q3B8N5 592 aa8.89□□□□□ -0.99
VPS41-210ENST00000462429 HS3ST6Q96QI5 342 aa8.89□□□□□ -0.99
VPS41-210ENST00000462429 ZBED2Q9BTP6 218 aa8.89□□□□□ -0.99
VPS41-210ENST00000462429 GPCPD1Q9NPB8 672 aa8.89□□□□□ -0.99
VPS41-210ENST00000462429 PHOX2BQ99453 314 aa8.88□□□□□ -0.99
VPS41-210ENST00000462429 SLC4A5Q9BY07 1137 aa8.88□□□□□ -0.99
VPS41-210ENST00000462429 PNMA3Q9UL41 463 aa8.88□□□□□ -0.99
VPS41-210ENST00000462429 AXIN2Q9Y2T1 843 aa8.88□□□□□ -0.99
VPS41-210ENST00000462429 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP8.87□□□□□ -0.99
VPS41-210ENST00000462429 POTEEQ6S8J3 1075 aa8.87□□□□□ -0.99
VPS41-210ENST00000462429 GIGYF2Q6Y7W6 1299 aaKnown RBP8.87□□□□□ -0.99
VPS41-210ENST00000462429 NUDT18Q6ZVK8 323 aa8.87□□□□□ -0.99
VPS41-210ENST00000462429 TATDN2Q93075 761 aa8.87□□□□□ -0.99
VPS41-210ENST00000462429 LCE2DQ5TA82 110 aaPredicted RBP8.86□□□□□ -0.99
VPS41-210ENST00000462429 DDRGK1Q96HY6 314 aa8.86□□□□□ -0.99
VPS41-210ENST00000462429 EYA1Q99502 592 aa8.86□□□□□ -0.99
VPS41-210ENST00000462429 KIAA1468Q9P260 1216 aa8.86□□□□□ -0.99
VPS41-210ENST00000462429 DMRTA1Q5VZB9 504 aa8.85□□□□□ -0.99
VPS41-210ENST00000462429 IL27Q8NEV9 243 aa8.85□□□□□ -0.99
VPS41-210ENST00000462429 TMUB1Q9BVT8 246 aa8.85□□□□□ -0.99
VPS41-210ENST00000462429 RABGEF1Q9UJ41 708 aa8.85□□□□□ -0.99
VPS41-210ENST00000462429 RCCD1A6NED2 376 aa8.84□□□□□ -0.99
VPS41-210ENST00000462429 DNAJB2P25686 324 aa8.84□□□□□ -0.99
VPS41-210ENST00000462429 NLRP7Q8WX94 980 aa8.84□□□□□ -0.99
VPS41-210ENST00000462429 REPIN1Q9BWE0 567 aaKnown RBP8.84□□□□□ -0.99
VPS41-210ENST00000462429 POTEB3A0JP26 581 aa8.83□□□□□ -1
VPS41-210ENST00000462429 POTEBQ6S5H4 581 aa8.83□□□□□ -1
VPS41-210ENST00000462429 FAM117AQ9C073 453 aa8.83□□□□□ -1
VPS41-210ENST00000462429 C3orf80F5H4A9 247 aa8.82□□□□□ -1
VPS41-210ENST00000462429 SSTR3P32745 418 aaPredicted RBP8.82□□□□□ -1
VPS41-210ENST00000462429 VPS9D1Q9Y2B5 631 aa8.82□□□□□ -1
VPS41-210ENST00000462429 TK2O00142 265 aa8.81□□□□□ -1
VPS41-210ENST00000462429 SMAPO00193 183 aa8.81□□□□□ -1
VPS41-210ENST00000462429 MS4A1P11836 297 aa8.81□□□□□ -1
VPS41-210ENST00000462429 FAM217BQ9NTX9 383 aaPredicted RBP8.81□□□□□ -1
VPS41-210ENST00000462429 NBPF3Q9H094 633 aa8.8□□□□□ -1
VPS41-210ENST00000462429 TMEM134Q9H6X4 195 aa8.8□□□□□ -1
VPS41-210ENST00000462429 LSM11P83369 360 aaKnown RBP eCLIP8.79□□□□□ -1
VPS41-210ENST00000462429 SULF1Q8IWU6 871 aa8.79□□□□□ -1
VPS41-210ENST00000462429 HDGFP51858 240 aaKnown RBP8.78□□□□□ -1
VPS41-210ENST00000462429 FAM98CQ17RN3 349 aaKnown RBP8.78□□□□□ -1
VPS41-210ENST00000462429 SEPT9Q9UHD8 586 aaPredicted RBP8.78□□□□□ -1
VPS41-210ENST00000462429 PLEKHG3A1L390 1219 aa8.77□□□□□ -1.01
VPS41-210ENST00000462429 LAPTM4BQ86VI4 370 aa8.77□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms