RNA–Protein interactions for RNA: ENST00000462254.1

CSMD3-205, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 2

Gene CSMD3, Length 457 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-205ENST00000462254 PHF14O94880 888 aa8.25□□□□□ -1.09
CSMD3-205ENST00000462254 CECR2Q9BXF3 1484 aa8.25□□□□□ -1.09
CSMD3-205ENST00000462254 SMARCA4P51532 1647 aa8.23□□□□□ -1.09
CSMD3-205ENST00000462254 POTEMA6NI47 508 aa8.23□□□□□ -1.09
CSMD3-205ENST00000462254 POTEGQ6S5H5 508 aa8.23□□□□□ -1.09
CSMD3-205ENST00000462254 RBM33Q96EV2 1170 aaKnown RBP8.23□□□□□ -1.09
CSMD3-205ENST00000462254 ADAM33Q9BZ11 813 aa8.23□□□□□ -1.09
CSMD3-205ENST00000462254 PSDA5PKW4 1024 aaPredicted RBP8.22□□□□□ -1.09
CSMD3-205ENST00000462254 PPP4R3BQ5MIZ7 849 aa8.22□□□□□ -1.09
CSMD3-205ENST00000462254 TYW1BQ6NUM6 668 aa8.22□□□□□ -1.09
CSMD3-205ENST00000462254 ZDHHC16Q969W1 377 aa8.22□□□□□ -1.09
CSMD3-205ENST00000462254 RBM26Q5T8P6 1007 aaKnown RBP8.21□□□□□ -1.1
CSMD3-205ENST00000462254 POTEEQ6S8J3 1075 aa8.21□□□□□ -1.1
CSMD3-205ENST00000462254 EPAS1Q99814 870 aa8.21□□□□□ -1.1
CSMD3-205ENST00000462254 BAZ1AQ9NRL2 1556 aaPredicted RBP8.21□□□□□ -1.1
CSMD3-205ENST00000462254 MROH2BQ7Z745 1585 aa8.2□□□□□ -1.1
CSMD3-205ENST00000462254 EN1Q05925 392 aaPredicted RBP8.2□□□□□ -1.1
CSMD3-205ENST00000462254 TMEM132AQ24JP5 1023 aa8.2□□□□□ -1.1
CSMD3-205ENST00000462254 EIF4G1Q04637 1599 aaKnown RBP8.19□□□□□ -1.1
CSMD3-205ENST00000462254 TSR1Q2NL82 804 aaKnown RBP8.19□□□□□ -1.1
CSMD3-205ENST00000462254 SMYD5Q6GMV2 418 aa8.19□□□□□ -1.1
CSMD3-205ENST00000462254 DHX30Q7L2E3 1194 aaKnown RBP eCLIP8.19□□□□□ -1.1
CSMD3-205ENST00000462254 ZNF687Q8N1G0 1237 aa8.19□□□□□ -1.1
CSMD3-205ENST00000462254 FBXW7Q969H0 707 aa8.19□□□□□ -1.1
CSMD3-205ENST00000462254 AXIN2Q9Y2T1 843 aa8.19□□□□□ -1.1
CSMD3-205ENST00000462254 WIZO95785 1651 aa8.18□□□□□ -1.1
CSMD3-205ENST00000462254 MAP3K7O43318 606 aa8.18□□□□□ -1.1
CSMD3-205ENST00000462254 BCL2L12Q9HB09 334 aa8.18□□□□□ -1.1
CSMD3-205ENST00000462254 PSEN2P49810 448 aa8.17□□□□□ -1.1
CSMD3-205ENST00000462254 C6orf132Q5T0Z8 1188 aa8.17□□□□□ -1.1
CSMD3-205ENST00000462254 CDHR5Q9HBB8 845 aa8.17□□□□□ -1.1
CSMD3-205ENST00000462254 KCNK17Q96T54 332 aa8.16□□□□□ -1.1
CSMD3-205ENST00000462254 RSF1Q96T23 1441 aaPredicted RBP8.15□□□□□ -1.1
CSMD3-205ENST00000462254 COL9A1P20849 921 aa8.15□□□□□ -1.1
CSMD3-205ENST00000462254 LMOD2Q6P5Q4 547 aa8.15□□□□□ -1.1
CSMD3-205ENST00000462254 NUTM2FA1L443 756 aa8.14□□□□□ -1.11
CSMD3-205ENST00000462254 ARHGAP33O14559 1287 aa8.14□□□□□ -1.11
CSMD3-205ENST00000462254 PTPREP23469 700 aa8.14□□□□□ -1.11
CSMD3-205ENST00000462254 DMRTA1Q5VZB9 504 aa8.14□□□□□ -1.11
CSMD3-205ENST00000462254 CDAN1Q8IWY9 1227 aa8.14□□□□□ -1.11
CSMD3-205ENST00000462254 NPDC1Q9NQX5 325 aaPredicted RBP8.13□□□□□ -1.11
CSMD3-205ENST00000462254 PEG3Q9GZU2 1588 aa8.13□□□□□ -1.11
CSMD3-205ENST00000462254 KRTAP3-3Q9BYR6 98 aa8.12□□□□□ -1.11
CSMD3-205ENST00000462254 KRTAP3-2Q9BYR7 98 aa8.12□□□□□ -1.11
CSMD3-205ENST00000462254 CC2D2AQ9P2K1 1620 aa8.11□□□□□ -1.11
CSMD3-205ENST00000462254 PBX2P40425 430 aa8.11□□□□□ -1.11
CSMD3-205ENST00000462254 PTGDRQ13258 359 aa8.11□□□□□ -1.11
CSMD3-205ENST00000462254 C14orf37Q86TY3 774 aa8.11□□□□□ -1.11
CSMD3-205ENST00000462254 GPR37O15354 613 aa8.1□□□□□ -1.11
CSMD3-205ENST00000462254 GPIHBP1Q8IV16 184 aa8.1□□□□□ -1.11
CSMD3-205ENST00000462254 PPP1R3GB7ZBB8 358 aa8.09□□□□□ -1.11
CSMD3-205ENST00000462254 LSM11P83369 360 aaKnown RBP eCLIP8.08□□□□□ -1.12
CSMD3-205ENST00000462254 PROX2Q3B8N5 592 aa8.08□□□□□ -1.12
CSMD3-205ENST00000462254 ZBED2Q9BTP6 218 aa8.08□□□□□ -1.12
CSMD3-205ENST00000462254 SMARCA2P51531 1590 aa8.08□□□□□ -1.12
CSMD3-205ENST00000462254 SUPT5HO00267 1087 aaKnown RBP8.07□□□□□ -1.12
CSMD3-205ENST00000462254 FCHSD2O94868 740 aa8.07□□□□□ -1.12
CSMD3-205ENST00000462254 ZC3H15Q8WU90 426 aaKnown RBP8.07□□□□□ -1.12
CSMD3-205ENST00000462254 KCNH8Q96L42 1107 aa8.07□□□□□ -1.12
CSMD3-205ENST00000462254 ATAD2BQ9ULI0 1458 aa8.06□□□□□ -1.12
CSMD3-205ENST00000462254 FECHP22830 423 aa8.06□□□□□ -1.12
CSMD3-205ENST00000462254 ANKRD13DQ6ZTN6 518 aa8.06□□□□□ -1.12
CSMD3-205ENST00000462254 TOP2AP11388 1531 aaKnown RBP8.05□□□□□ -1.12
CSMD3-205ENST00000462254 PRSS12P56730 875 aa8.05□□□□□ -1.12
CSMD3-205ENST00000462254 CDCA7LQ96GN5 454 aa8.05□□□□□ -1.12
CSMD3-205ENST00000462254 FAM198AQ9UFP1 575 aa8.05□□□□□ -1.12
CSMD3-205ENST00000462254 TSKSQ9UJT2 592 aa8.05□□□□□ -1.12
CSMD3-205ENST00000462254 VPS9D1Q9Y2B5 631 aa8.05□□□□□ -1.12
CSMD3-205ENST00000462254 HMGXB3Q12766 1538 aa8.04□□□□□ -1.12
CSMD3-205ENST00000462254 C3orf80F5H4A9 247 aa8.04□□□□□ -1.12
CSMD3-205ENST00000462254 PADI6Q6TGC4 694 aa8.04□□□□□ -1.12
CSMD3-205ENST00000462254 CERKQ8TCT0 537 aa8.04□□□□□ -1.12
CSMD3-205ENST00000462254 ADGRD1Q6QNK2 874 aa8.03□□□□□ -1.12
CSMD3-205ENST00000462254 TTC13Q8NBP0 860 aa8.03□□□□□ -1.12
CSMD3-205ENST00000462254 SLC4A5Q9BY07 1137 aa8.03□□□□□ -1.12
CSMD3-205ENST00000462254 TRIM6-TRIM34B2RNG4 842 aa8.02□□□□□ -1.13
CSMD3-205ENST00000462254 GNPATO15228 680 aa8.02□□□□□ -1.13
CSMD3-205ENST00000462254 HIC1Q14526 733 aa8.02□□□□□ -1.13
CSMD3-205ENST00000462254 FAM161AQ3B820 660 aa8.02□□□□□ -1.13
CSMD3-205ENST00000462254 KIAA1468Q9P260 1216 aa8.02□□□□□ -1.13
CSMD3-205ENST00000462254 BAZ1BQ9UIG0 1483 aaKnown RBP8.01□□□□□ -1.13
CSMD3-205ENST00000462254 TK2O00142 265 aa8.01□□□□□ -1.13
CSMD3-205ENST00000462254 ZMYND10O75800 440 aa8.01□□□□□ -1.13
CSMD3-205ENST00000462254 NCAPD3P42695 1498 aa8□□□□□ -1.13
CSMD3-205ENST00000462254 HRO43593 1189 aa8□□□□□ -1.13
CSMD3-205ENST00000462254 PCDH10Q9P2E7 1040 aa8□□□□□ -1.13
CSMD3-205ENST00000462254 RBM27Q9P2N5 1060 aaKnown RBP8□□□□□ -1.13
CSMD3-205ENST00000462254 BHMG1C9JSJ3 638 aaPredicted RBP7.99□□□□□ -1.13
CSMD3-205ENST00000462254 RABGEF1Q9UJ41 708 aa7.99□□□□□ -1.13
CSMD3-205ENST00000462254 SMAPO00193 183 aa7.98□□□□□ -1.13
CSMD3-205ENST00000462254 ONECUT3O60422 494 aaPredicted RBP7.98□□□□□ -1.13
CSMD3-205ENST00000462254 BARGINQ6ZT62 677 aa7.98□□□□□ -1.13
CSMD3-205ENST00000462254 NUDT18Q6ZVK8 323 aa7.97□□□□□ -1.13
CSMD3-205ENST00000462254 PACS2Q86VP3 889 aa7.97□□□□□ -1.13
CSMD3-205ENST00000462254 SEPT9Q9UHD8 586 aaPredicted RBP7.97□□□□□ -1.13
CSMD3-205ENST00000462254 ADGRG1Q9Y653 693 aa7.97□□□□□ -1.13
CSMD3-205ENST00000462254 RANGAP1P46060 587 aaPredicted RBP7.96□□□□□ -1.14
CSMD3-205ENST00000462254 TATDN2Q93075 761 aa7.96□□□□□ -1.14
CSMD3-205ENST00000462254 IRF6O14896 467 aa7.95□□□□□ -1.14
CSMD3-205ENST00000462254 MAP2K5Q13163 448 aa7.95□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms