RNA–Protein interactions for RNA: ENST00000455111.1

GPC1-206, Transcript of glypican 1, humanhuman

TSL 3

Gene GPC1, Length 841 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC1-206ENST00000455111 PLA2R1Q13018 1463 aa25.56■■□□□ 1.68
GPC1-206ENST00000455111 KIF3BO15066 747 aa25.56■■□□□ 1.68
GPC1-206ENST00000455111 RNF17Q9BXT8 1623 aaKnown RBP25.55■■□□□ 1.68
GPC1-206ENST00000455111 MROH1Q8NDA8 1641 aa25.55■■□□□ 1.68
GPC1-206ENST00000455111 MYOM3Q5VTT5 1437 aa25.54■■□□□ 1.68
GPC1-206ENST00000455111 RSPH4AQ5TD94 716 aa25.54■■□□□ 1.68
GPC1-206ENST00000455111 FBXO31Q5XUX0 539 aaPredicted RBP25.54■■□□□ 1.68
GPC1-206ENST00000455111 PZPP20742 1482 aa25.53■■□□□ 1.68
GPC1-206ENST00000455111 FAM135AQ9P2D6 1515 aa25.53■■□□□ 1.68
GPC1-206ENST00000455111 A2ML1A8K2U0 1454 aa25.53■■□□□ 1.68
GPC1-206ENST00000455111 MIA2Q96PC5 1412 aa25.51■■□□□ 1.67
GPC1-206ENST00000455111 CROCC2H7BZ55 1655 aa25.5■■□□□ 1.67
GPC1-206ENST00000455111 NEURL4Q96JN8 1562 aa25.49■■□□□ 1.67
GPC1-206ENST00000455111 EIF2AK4Q9P2K8 1649 aaKnown RBP25.48■■□□□ 1.67
GPC1-206ENST00000455111 POLR1AO95602 1720 aaPredicted RBP25.47■■□□□ 1.67
GPC1-206ENST00000455111 ABCC3O15438 1527 aa25.47■■□□□ 1.67
GPC1-206ENST00000455111 CEP152O94986 1710 aa25.46■■□□□ 1.67
GPC1-206ENST00000455111 TNRQ92752 1358 aa25.45■■□□□ 1.67
GPC1-206ENST00000455111 ZNF335Q9H4Z2 1342 aaPredicted RBP25.45■■□□□ 1.66
GPC1-206ENST00000455111 TSPY4P0CV99 314 aa25.45■■□□□ 1.66
GPC1-206ENST00000455111 TSPY10P0CW01 314 aa25.45■■□□□ 1.66
GPC1-206ENST00000455111 PTPN23Q9H3S7 1636 aa25.45■■□□□ 1.66
GPC1-206ENST00000455111 ZC3H13Q5T200 1668 aaKnown RBP25.44■■□□□ 1.66
GPC1-206ENST00000455111 WASHC2CQ9Y4E1 1318 aa25.42■■□□□ 1.66
GPC1-206ENST00000455111 IQSEC2Q5JU85 1478 aa25.42■■□□□ 1.66
GPC1-206ENST00000455111 ABCC5O15440 1437 aa25.41■■□□□ 1.66
GPC1-206ENST00000455111 SPATA31D1Q6ZQQ2 1576 aa25.4■■□□□ 1.66
GPC1-206ENST00000455111 PKD2Q13563 968 aa25.4■■□□□ 1.66
GPC1-206ENST00000455111 DUOX2Q9NRD8 1548 aa25.37■■□□□ 1.65
GPC1-206ENST00000455111 SHANK2Q9UPX8 1470 aa25.36■■□□□ 1.65
GPC1-206ENST00000455111 CFAP65Q6ZU64 1925 aaKnown RBP25.35■■□□□ 1.65
GPC1-206ENST00000455111 ERVK-7P63135 1459 aa25.34■■□□□ 1.65
GPC1-206ENST00000455111 NLRP1Q9C000 1473 aa25.34■■□□□ 1.65
GPC1-206ENST00000455111 DEPDC5O75140 1603 aa25.34■■□□□ 1.65
GPC1-206ENST00000455111 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP25.33■■□□□ 1.65
GPC1-206ENST00000455111 PRDM15P57071 1507 aaPredicted RBP25.33■■□□□ 1.65
GPC1-206ENST00000455111 DAPK1P53355 1430 aa25.33■■□□□ 1.65
GPC1-206ENST00000455111 FGD6Q6ZV73 1430 aa25.33■■□□□ 1.65
GPC1-206ENST00000455111 UGGT1Q9NYU2 1555 aa25.33■■□□□ 1.65
GPC1-206ENST00000455111 VWDEQ8N2E2 1590 aa25.31■■□□□ 1.64
GPC1-206ENST00000455111 KIF15Q9NS87 1388 aa25.3■■□□□ 1.64
GPC1-206ENST00000455111 UBR1Q8IWV7 1749 aa25.29■■□□□ 1.64
GPC1-206ENST00000455111 STRCP1A6NGW2 1772 aa25.28■■□□□ 1.64
GPC1-206ENST00000455111 MED14O60244 1454 aa25.28■■□□□ 1.64
GPC1-206ENST00000455111 ERBINQ96RT1 1412 aa25.27■■□□□ 1.64
GPC1-206ENST00000455111 RRP7BPQ9NSQ0 103 aa25.25■■□□□ 1.63
GPC1-206ENST00000455111 IQGAP1P46940 1657 aa25.24■■□□□ 1.63
GPC1-206ENST00000455111 ALKQ9UM73 1620 aa25.22■■□□□ 1.63
GPC1-206ENST00000455111 NPHP4O75161 1426 aaPredicted RBP25.21■■□□□ 1.63
GPC1-206ENST00000455111 ARHGAP31Q2M1Z3 1444 aa25.21■■□□□ 1.63
GPC1-206ENST00000455111 THEMISQ8N1K5 641 aaPredicted RBP25.19■■□□□ 1.62
GPC1-206ENST00000455111 CPS1P31327 1500 aa25.18■■□□□ 1.62
GPC1-206ENST00000455111 APLP2Q06481 763 aa25.18■■□□□ 1.62
GPC1-206ENST00000455111 ANKLE2Q86XL3 938 aa25.18■■□□□ 1.62
GPC1-206ENST00000455111 CHIC2Q9UKJ5 165 aa25.18■■□□□ 1.62
GPC1-206ENST00000455111 PIK3C2BO00750 1634 aa25.18■■□□□ 1.62
GPC1-206ENST00000455111 LMTK2Q8IWU2 1503 aa25.17■■□□□ 1.62
GPC1-206ENST00000455111 ADGRL2O95490 1459 aa25.16■■□□□ 1.62
GPC1-206ENST00000455111 ARHGAP23Q9P227 1491 aa25.16■■□□□ 1.62
GPC1-206ENST00000455111 UBAP1LF5GYI3 381 aa25.15■■□□□ 1.62
GPC1-206ENST00000455111 SYNMO15061 1565 aa25.14■■□□□ 1.62
GPC1-206ENST00000455111 ILDR2Q71H61 639 aa25.14■■□□□ 1.62
GPC1-206ENST00000455111 SLIT1O75093 1534 aa25.13■■□□□ 1.61
GPC1-206ENST00000455111 ANKRD30AQ9BXX3 1397 aa25.11■■□□□ 1.61
GPC1-206ENST00000455111 GRWD1Q9BQ67 446 aaKnown RBP eCLIP25.11■■□□□ 1.61
GPC1-206ENST00000455111 DISP3Q9P2K9 1392 aa25.1■■□□□ 1.61
GPC1-206ENST00000455111 LTKP29376 864 aa25.1■■□□□ 1.61
GPC1-206ENST00000455111 EFCAB6Q5THR3 1501 aa25.09■■□□□ 1.61
GPC1-206ENST00000455111 XIRP1Q702N8 1843 aaKnown RBP25.08■■□□□ 1.61
GPC1-206ENST00000455111 SCAF11Q99590 1463 aaKnown RBP25.07■■□□□ 1.6
GPC1-206ENST00000455111 KDM5AP29375 1690 aaKnown RBP25.07■■□□□ 1.6
GPC1-206ENST00000455111 LRRC7Q96NW7 1537 aa25.07■■□□□ 1.6
GPC1-206ENST00000455111 NOS1P29475 1434 aa25.04■■□□□ 1.6
GPC1-206ENST00000455111 FAM50AQ14320 339 aaKnown RBP25.01■■□□□ 1.59
GPC1-206ENST00000455111 MYO5BQ9ULV0 1848 aa25■■□□□ 1.59
GPC1-206ENST00000455111 IDI1Q13907 227 aa25■■□□□ 1.59
GPC1-206ENST00000455111 KANK1Q14678 1352 aa25■■□□□ 1.59
GPC1-206ENST00000455111 UNC13BO14795 1591 aa25■■□□□ 1.59
GPC1-206ENST00000455111 TMEM2Q9UHN6 1383 aa24.99■■□□□ 1.59
GPC1-206ENST00000455111 ANKRD50Q9ULJ7 1429 aa24.99■■□□□ 1.59
GPC1-206ENST00000455111 TET3O43151 1660 aa24.97■■□□□ 1.59
GPC1-206ENST00000455111 ADGRB3O60242 1522 aa24.97■■□□□ 1.59
GPC1-206ENST00000455111 HSPA1LP34931 641 aa24.97■■□□□ 1.59
GPC1-206ENST00000455111 TXNDC2Q86VQ3 553 aa24.97■■□□□ 1.59
GPC1-206ENST00000455111 PIP4K2BP78356 416 aa24.96■■□□□ 1.59
GPC1-206ENST00000455111 GCC2Q8IWJ2 1684 aa24.95■■□□□ 1.58
GPC1-206ENST00000455111 E9PCH4 1651 aa24.94■■□□□ 1.58
GPC1-206ENST00000455111 TOM1O60784 492 aa24.92■■□□□ 1.58
GPC1-206ENST00000455111 TMEM131LA2VDJ0 1609 aa24.9■■□□□ 1.58
GPC1-206ENST00000455111 RPRD2Q5VT52 1461 aaKnown RBP24.89■■□□□ 1.58
GPC1-206ENST00000455111 SCAF1Q9H7N4 1312 aaKnown RBP24.89■■□□□ 1.58
GPC1-206ENST00000455111 MED1Q15648 1581 aaPredicted RBP24.89■■□□□ 1.58
GPC1-206ENST00000455111 IQGAP3Q86VI3 1631 aa24.88■■□□□ 1.57
GPC1-206ENST00000455111 PPARGC1BQ86YN6 1023 aaKnown RBP24.87■■□□□ 1.57
GPC1-206ENST00000455111 ZFYVE9O95405 1425 aa24.86■■□□□ 1.57
GPC1-206ENST00000455111 ROCK1Q13464 1354 aa24.85■■□□□ 1.57
GPC1-206ENST00000455111 NWD1Q149M9 1564 aa24.84■■□□□ 1.57
GPC1-206ENST00000455111 EID1Q9Y6B2 187 aa24.84■■□□□ 1.57
GPC1-206ENST00000455111 SOCS7O14512 581 aa24.81■■□□□ 1.56
GPC1-206ENST00000455111 SLC26A8Q96RN1 970 aa24.81■■□□□ 1.56
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms