RNA–Protein interactions for RNA: ENST00000447155.1

HMGB1P16-201, Transcript of high mobility group box 1 pseudogene 16, humanhuman

BASIC

Gene HMGB1P16, Length 540 nt, Biotype processed pseudogene.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P16-201ENST00000447155 NPDC1Q9NQX5 325 aaPredicted RBP9.14□□□□□ -0.95
HMGB1P16-201ENST00000447155 ZNF454Q8N9F8 522 aa9.13□□□□□ -0.95
HMGB1P16-201ENST00000447155 KHSRPQ92945 711 aaKnown RBP eCLIP9.13□□□□□ -0.95
HMGB1P16-201ENST00000447155 DAXXQ9UER7 740 aaPredicted RBP9.13□□□□□ -0.95
HMGB1P16-201ENST00000447155 GTF3C3Q9Y5Q9 886 aa9.13□□□□□ -0.95
HMGB1P16-201ENST00000447155 SNPHO15079 494 aa9.12□□□□□ -0.95
HMGB1P16-201ENST00000447155 AMHR2Q16671 573 aa9.12□□□□□ -0.95
HMGB1P16-201ENST00000447155 TSR1Q2NL82 804 aaKnown RBP9.12□□□□□ -0.95
HMGB1P16-201ENST00000447155 ZDHHC16Q969W1 377 aa9.12□□□□□ -0.95
HMGB1P16-201ENST00000447155 KDM4CQ9H3R0 1056 aa9.12□□□□□ -0.95
HMGB1P16-201ENST00000447155 CERKQ8TCT0 537 aa9.1□□□□□ -0.95
HMGB1P16-201ENST00000447155 C6orf132Q5T0Z8 1188 aa9.09□□□□□ -0.95
HMGB1P16-201ENST00000447155 PSDA5PKW4 1024 aaPredicted RBP9.08□□□□□ -0.96
HMGB1P16-201ENST00000447155 ADAM33Q9BZ11 813 aa9.07□□□□□ -0.96
HMGB1P16-201ENST00000447155 LHX6Q9UPM6 363 aa9.07□□□□□ -0.96
HMGB1P16-201ENST00000447155 PPP4R3BQ5MIZ7 849 aa9.06□□□□□ -0.96
HMGB1P16-201ENST00000447155 PARP9Q8IXQ6 854 aa9.06□□□□□ -0.96
HMGB1P16-201ENST00000447155 RBM27Q9P2N5 1060 aaKnown RBP9.06□□□□□ -0.96
HMGB1P16-201ENST00000447155 HOXB1P14653 301 aaPredicted RBP9.05□□□□□ -0.96
HMGB1P16-201ENST00000447155 TTLL12Q14166 644 aaPredicted RBP9.03□□□□□ -0.96
HMGB1P16-201ENST00000447155 IL27Q8NEV9 243 aa9.03□□□□□ -0.96
HMGB1P16-201ENST00000447155 OTUD5Q96G74 571 aa9.03□□□□□ -0.96
HMGB1P16-201ENST00000447155 BCL2L12Q9HB09 334 aa9.03□□□□□ -0.96
HMGB1P16-201ENST00000447155 PADI6Q6TGC4 694 aa9.02□□□□□ -0.97
HMGB1P16-201ENST00000447155 TTC13Q8NBP0 860 aa9.02□□□□□ -0.97
HMGB1P16-201ENST00000447155 DDRGK1Q96HY6 314 aa9.02□□□□□ -0.97
HMGB1P16-201ENST00000447155 OATP04181 439 aa9.01□□□□□ -0.97
HMGB1P16-201ENST00000447155 ERICH6Q7L0X2 663 aa9.01□□□□□ -0.97
HMGB1P16-201ENST00000447155 FAM117AQ9C073 453 aa9.01□□□□□ -0.97
HMGB1P16-201ENST00000447155 PRSS12P56730 875 aa9□□□□□ -0.97
HMGB1P16-201ENST00000447155 CLCN1P35523 988 aa8.99□□□□□ -0.97
HMGB1P16-201ENST00000447155 GIGYF2Q6Y7W6 1299 aaKnown RBP8.99□□□□□ -0.97
HMGB1P16-201ENST00000447155 CDCA7LQ96GN5 454 aa8.99□□□□□ -0.97
HMGB1P16-201ENST00000447155 ADGRG1Q9Y653 693 aa8.99□□□□□ -0.97
HMGB1P16-201ENST00000447155 PPP1R3GB7ZBB8 358 aa8.98□□□□□ -0.97
HMGB1P16-201ENST00000447155 PTPREP23469 700 aa8.98□□□□□ -0.97
HMGB1P16-201ENST00000447155 LHX8Q68G74 356 aa8.98□□□□□ -0.97
HMGB1P16-201ENST00000447155 METTL3Q86U44 580 aaKnown RBP8.98□□□□□ -0.97
HMGB1P16-201ENST00000447155 TMUB1Q9BVT8 246 aa8.98□□□□□ -0.97
HMGB1P16-201ENST00000447155 MDM2Q00987 491 aaPredicted RBP8.97□□□□□ -0.97
HMGB1P16-201ENST00000447155 FAM161AQ3B820 660 aa8.97□□□□□ -0.97
HMGB1P16-201ENST00000447155 PXYLP1Q8TE99 480 aa8.97□□□□□ -0.97
HMGB1P16-201ENST00000447155 PHOX2BQ99453 314 aa8.97□□□□□ -0.97
HMGB1P16-201ENST00000447155 REPIN1Q9BWE0 567 aaKnown RBP8.97□□□□□ -0.97
HMGB1P16-201ENST00000447155 GPCPD1Q9NPB8 672 aa8.97□□□□□ -0.97
HMGB1P16-201ENST00000447155 PLEKHG3A1L390 1219 aa8.96□□□□□ -0.98
HMGB1P16-201ENST00000447155 COL9A1P20849 921 aa8.96□□□□□ -0.98
HMGB1P16-201ENST00000447155 RBM46Q8TBY0 533 aaKnown RBP8.95□□□□□ -0.98
HMGB1P16-201ENST00000447155 TIMELESSQ9UNS1 1208 aa8.95□□□□□ -0.98
HMGB1P16-201ENST00000447155 MS4A1P11836 297 aa8.94□□□□□ -0.98
HMGB1P16-201ENST00000447155 FAM198AQ9UFP1 575 aa8.93□□□□□ -0.98
HMGB1P16-201ENST00000447155 KCNH8Q96L42 1107 aa8.92□□□□□ -0.98
HMGB1P16-201ENST00000447155 TRIM6-TRIM34B2RNG4 842 aa8.91□□□□□ -0.98
HMGB1P16-201ENST00000447155 SSTR3P32745 418 aaPredicted RBP8.91□□□□□ -0.98
HMGB1P16-201ENST00000447155 GOPCQ9HD26 462 aa8.91□□□□□ -0.98
HMGB1P16-201ENST00000447155 TSKSQ9UJT2 592 aa8.91□□□□□ -0.98
HMGB1P16-201ENST00000447155 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP8.9□□□□□ -0.98
HMGB1P16-201ENST00000447155 NBPF26B4DH59 902 aa8.9□□□□□ -0.98
HMGB1P16-201ENST00000447155 ONECUT3O60422 494 aaPredicted RBP8.9□□□□□ -0.98
HMGB1P16-201ENST00000447155 PACS2Q86VP3 889 aa8.9□□□□□ -0.98
HMGB1P16-201ENST00000447155 NLRP7Q8WX94 980 aa8.9□□□□□ -0.98
HMGB1P16-201ENST00000447155 KCNK17Q96T54 332 aa8.9□□□□□ -0.98
HMGB1P16-201ENST00000447155 EYA1Q99502 592 aa8.9□□□□□ -0.98
HMGB1P16-201ENST00000447155 FAM217BQ9NTX9 383 aaPredicted RBP8.9□□□□□ -0.98
HMGB1P16-201ENST00000447155 ERBB3P21860 1342 aa8.89□□□□□ -0.99
HMGB1P16-201ENST00000447155 PLSCR2Q9NRY7 297 aa8.89□□□□□ -0.99
HMGB1P16-201ENST00000447155 C14orf37Q86TY3 774 aa8.88□□□□□ -0.99
HMGB1P16-201ENST00000447155 RCCD1A6NED2 376 aa8.87□□□□□ -0.99
HMGB1P16-201ENST00000447155 VARS2Q5ST30 1063 aaKnown RBP8.87□□□□□ -0.99
HMGB1P16-201ENST00000447155 NUDT18Q6ZVK8 323 aa8.87□□□□□ -0.99
HMGB1P16-201ENST00000447155 TATDN2Q93075 761 aa8.87□□□□□ -0.99
HMGB1P16-201ENST00000447155 ST18O60284 1047 aa8.86□□□□□ -0.99
HMGB1P16-201ENST00000447155 PROX2Q3B8N5 592 aa8.86□□□□□ -0.99
HMGB1P16-201ENST00000447155 BEGAINQ9BUH8 593 aa8.86□□□□□ -0.99
HMGB1P16-201ENST00000447155 PNMA3Q9UL41 463 aa8.86□□□□□ -0.99
HMGB1P16-201ENST00000447155 C3orf80F5H4A9 247 aa8.85□□□□□ -0.99
HMGB1P16-201ENST00000447155 ARHGAP33O14559 1287 aa8.85□□□□□ -0.99
HMGB1P16-201ENST00000447155 DNAJB2P25686 324 aa8.85□□□□□ -0.99
HMGB1P16-201ENST00000447155 EMP3P54852 163 aa8.85□□□□□ -0.99
HMGB1P16-201ENST00000447155 ZBED2Q9BTP6 218 aa8.85□□□□□ -0.99
HMGB1P16-201ENST00000447155 RSPH6AQ9H0K4 717 aa8.85□□□□□ -0.99
HMGB1P16-201ENST00000447155 PBX2P40425 430 aa8.84□□□□□ -0.99
HMGB1P16-201ENST00000447155 PSEN2P49810 448 aa8.84□□□□□ -0.99
HMGB1P16-201ENST00000447155 SH3D19Q5HYK7 790 aa8.84□□□□□ -0.99
HMGB1P16-201ENST00000447155 PCMTD1Q96MG8 357 aaPredicted RBP8.84□□□□□ -0.99
HMGB1P16-201ENST00000447155 SLC4A5Q9BY07 1137 aa8.84□□□□□ -0.99
HMGB1P16-201ENST00000447155 TMEM134Q9H6X4 195 aa8.83□□□□□ -1
HMGB1P16-201ENST00000447155 KIAA1468Q9P260 1216 aa8.83□□□□□ -1
HMGB1P16-201ENST00000447155 SULF1Q8IWU6 871 aa8.82□□□□□ -1
HMGB1P16-201ENST00000447155 SKIV2LQ15477 1246 aaKnown RBP8.81□□□□□ -1
HMGB1P16-201ENST00000447155 POTEEQ6S8J3 1075 aa8.81□□□□□ -1
HMGB1P16-201ENST00000447155 MARVELD3Q96A59 401 aa8.81□□□□□ -1
HMGB1P16-201ENST00000447155 SMAPO00193 183 aa8.8□□□□□ -1
HMGB1P16-201ENST00000447155 DIXDC1Q155Q3 683 aa8.8□□□□□ -1
HMGB1P16-201ENST00000447155 ZNF687Q8N1G0 1237 aa8.8□□□□□ -1
HMGB1P16-201ENST00000447155 RABGEF1Q9UJ41 708 aa8.8□□□□□ -1
HMGB1P16-201ENST00000447155 FAM205CA6NFA0 338 aa8.79□□□□□ -1
HMGB1P16-201ENST00000447155 CD46P15529 392 aa8.79□□□□□ -1
HMGB1P16-201ENST00000447155 DDX11L8A8MPP1 907 aa8.78□□□□□ -1
HMGB1P16-201ENST00000447155 DMRTA1Q5VZB9 504 aa8.78□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms