RNA–Protein interactions for RNA: ENST00000446225.5

MCF2-206, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MCF2, Length 1,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-206ENST00000446225 GRXCR2A6NFK2 248 aa9.84□□□□□ -0.83
MCF2-206ENST00000446225 E9PSI1 815 aa9.84□□□□□ -0.83
MCF2-206ENST00000446225 HIC1Q14526 733 aa9.84□□□□□ -0.83
MCF2-206ENST00000446225 KIF21AQ7Z4S6 1674 aa9.81□□□□□ -0.84
MCF2-206ENST00000446225 COG6Q9Y2V7 657 aa9.81□□□□□ -0.84
MCF2-206ENST00000446225 ZNF330Q9Y3S2 320 aaPredicted RBP9.81□□□□□ -0.84
MCF2-206ENST00000446225 FCHSD2O94868 740 aa9.8□□□□□ -0.84
MCF2-206ENST00000446225 REPIN1Q9BWE0 567 aaKnown RBP9.8□□□□□ -0.84
MCF2-206ENST00000446225 ATP1B4Q9UN42 357 aaPredicted RBP9.8□□□□□ -0.84
MCF2-206ENST00000446225 PPP1R15AO75807 674 aaPredicted RBP9.8□□□□□ -0.84
MCF2-206ENST00000446225 OXER1Q8TDS5 423 aa9.8□□□□□ -0.84
MCF2-206ENST00000446225 RBM42Q9BTD8 480 aaKnown RBP9.8□□□□□ -0.84
MCF2-206ENST00000446225 CEP164Q9UPV0 1460 aa9.8□□□□□ -0.84
MCF2-206ENST00000446225 MAP3K13O43283 966 aa9.79□□□□□ -0.84
MCF2-206ENST00000446225 SKIV2LQ15477 1246 aaKnown RBP9.79□□□□□ -0.84
MCF2-206ENST00000446225 CHADLQ6NUI6 762 aa9.78□□□□□ -0.84
MCF2-206ENST00000446225 MRC2Q9UBG0 1479 aa9.78□□□□□ -0.84
MCF2-206ENST00000446225 PDE4CQ08493 712 aa9.78□□□□□ -0.84
MCF2-206ENST00000446225 ACIN1Q9UKV3 1341 aaKnown RBP9.77□□□□□ -0.85
MCF2-206ENST00000446225 SPDYE5A6NIY4 337 aa9.77□□□□□ -0.85
MCF2-206ENST00000446225 PATL2C9JE40 543 aaKnown RBP9.77□□□□□ -0.85
MCF2-206ENST00000446225 DSG2Q14126 1118 aa9.76□□□□□ -0.85
MCF2-206ENST00000446225 THOC2Q8NI27 1593 aaKnown RBP9.76□□□□□ -0.85
MCF2-206ENST00000446225 GOLGA2Q08379 1002 aa9.76□□□□□ -0.85
MCF2-206ENST00000446225 FARP1Q9Y4F1 1045 aaPredicted RBP9.76□□□□□ -0.85
MCF2-206ENST00000446225 CUX2O14529 1486 aa9.75□□□□□ -0.85
MCF2-206ENST00000446225 OSBPP22059 807 aa9.75□□□□□ -0.85
MCF2-206ENST00000446225 PROCA1Q8NCQ7 364 aaPredicted RBP9.75□□□□□ -0.85
MCF2-206ENST00000446225 URB2Q14146 1524 aaKnown RBP9.74□□□□□ -0.85
MCF2-206ENST00000446225 PITPNM1O00562 1244 aa9.74□□□□□ -0.85
MCF2-206ENST00000446225 HMGB1P09429 215 aaKnown RBP9.74□□□□□ -0.85
MCF2-206ENST00000446225 KIF12Q96FN5 646 aa9.72□□□□□ -0.85
MCF2-206ENST00000446225 PRDM2Q13029 1718 aa9.72□□□□□ -0.85
MCF2-206ENST00000446225 WDR62O43379 1518 aa9.72□□□□□ -0.85
MCF2-206ENST00000446225 POLR3EQ9NVU0 708 aa9.72□□□□□ -0.85
MCF2-206ENST00000446225 CLCN1P35523 988 aa9.7□□□□□ -0.86
MCF2-206ENST00000446225 CALR3Q96L12 384 aaKnown RBP9.7□□□□□ -0.86
MCF2-206ENST00000446225 KCNA1Q09470 495 aa9.7□□□□□ -0.86
MCF2-206ENST00000446225 SNRKQ9NRH2 765 aa9.7□□□□□ -0.86
MCF2-206ENST00000446225 BRD1O95696 1058 aa9.69□□□□□ -0.86
MCF2-206ENST00000446225 PTGDRQ13258 359 aa9.69□□□□□ -0.86
MCF2-206ENST00000446225 TOPBP1Q92547 1522 aa9.69□□□□□ -0.86
MCF2-206ENST00000446225 PAK3O75914 559 aaPredicted RBP9.68□□□□□ -0.86
MCF2-206ENST00000446225 TMUB1Q9BVT8 246 aa9.68□□□□□ -0.86
MCF2-206ENST00000446225 GPCPD1Q9NPB8 672 aa9.68□□□□□ -0.86
MCF2-206ENST00000446225 HSP90B1P14625 803 aaKnown RBP9.68□□□□□ -0.86
MCF2-206ENST00000446225 MAP3K9P80192 1104 aa9.68□□□□□ -0.86
MCF2-206ENST00000446225 FOXK1P85037 733 aa9.68□□□□□ -0.86
MCF2-206ENST00000446225 BEGAINQ9BUH8 593 aa9.68□□□□□ -0.86
MCF2-206ENST00000446225 GNL3Q9BVP2 549 aaKnown RBP eCLIP9.68□□□□□ -0.86
MCF2-206ENST00000446225 AMOTL2Q9Y2J4 779 aa9.68□□□□□ -0.86
MCF2-206ENST00000446225 SSTR3P32745 418 aaPredicted RBP9.67□□□□□ -0.86
MCF2-206ENST00000446225 BANK1Q8NDB2 785 aa9.67□□□□□ -0.86
MCF2-206ENST00000446225 CDK11BP21127 795 aaKnown RBP9.66□□□□□ -0.86
MCF2-206ENST00000446225 MDM2Q00987 491 aaPredicted RBP9.66□□□□□ -0.86
MCF2-206ENST00000446225 CDK11AQ9UQ88 783 aaPredicted RBP9.66□□□□□ -0.86
MCF2-206ENST00000446225 ABCC8Q09428 1581 aa9.66□□□□□ -0.86
MCF2-206ENST00000446225 USP35Q9P2H5 1018 aa9.66□□□□□ -0.86
MCF2-206ENST00000446225 DNMBPQ6XZF7 1577 aa9.65□□□□□ -0.86
MCF2-206ENST00000446225 CCDC27Q2M243 656 aa9.65□□□□□ -0.86
MCF2-206ENST00000446225 TMC2Q8TDI7 906 aa9.65□□□□□ -0.86
MCF2-206ENST00000446225 DDX12PQ92771 950 aa9.65□□□□□ -0.86
MCF2-206ENST00000446225 GLMNQ92990 594 aa9.65□□□□□ -0.86
MCF2-206ENST00000446225 GDPD2Q9HCC8 539 aa9.65□□□□□ -0.86
MCF2-206ENST00000446225 CUX1P39880 1505 aa9.65□□□□□ -0.87
MCF2-206ENST00000446225 WWC1Q8IX03 1113 aa9.64□□□□□ -0.87
MCF2-206ENST00000446225 RFC5P40937 340 aa9.64□□□□□ -0.87
MCF2-206ENST00000446225 TBC1D12O60347 775 aa9.63□□□□□ -0.87
MCF2-206ENST00000446225 MYT1LQ9UL68 1186 aa9.63□□□□□ -0.87
MCF2-206ENST00000446225 MYSM1Q5VVJ2 828 aa9.62□□□□□ -0.87
MCF2-206ENST00000446225 PLPP6Q8IY26 295 aa9.62□□□□□ -0.87
MCF2-206ENST00000446225 PBXIP1Q96AQ6 731 aa9.62□□□□□ -0.87
MCF2-206ENST00000446225 USTQ9Y2C2 406 aa9.62□□□□□ -0.87
MCF2-206ENST00000446225 WRNQ14191 1432 aaPredicted RBP eCLIP9.61□□□□□ -0.87
MCF2-206ENST00000446225 EIF5BO60841 1220 aaKnown RBP9.61□□□□□ -0.87
MCF2-206ENST00000446225 PTGER2P43116 358 aa9.61□□□□□ -0.87
MCF2-206ENST00000446225 PUS7Q96PZ0 661 aaKnown RBP9.61□□□□□ -0.87
MCF2-206ENST00000446225 TMEM106CQ9BVX2 250 aa9.61□□□□□ -0.87
MCF2-206ENST00000446225 POLA1P09884 1462 aaPredicted RBP9.61□□□□□ -0.87
MCF2-206ENST00000446225 SOGA1O94964 1423 aa9.61□□□□□ -0.87
MCF2-206ENST00000446225 PRIM1P49642 420 aaKnown RBP9.6□□□□□ -0.87
MCF2-206ENST00000446225 CLK2P49760 499 aaKnown RBP9.6□□□□□ -0.87
MCF2-206ENST00000446225 PHOX2BQ99453 314 aa9.6□□□□□ -0.87
MCF2-206ENST00000446225 IFT140Q96RY7 1462 aa9.6□□□□□ -0.87
MCF2-206ENST00000446225 RAD54L2Q9Y4B4 1467 aa9.6□□□□□ -0.87
MCF2-206ENST00000446225 POM121CA8CG34 1229 aa9.6□□□□□ -0.87
MCF2-206ENST00000446225 FGD5Q6ZNL6 1462 aa9.6□□□□□ -0.87
MCF2-206ENST00000446225 CSB-PGBD3P0DP91 1061 aa9.59□□□□□ -0.87
MCF2-206ENST00000446225 ABL2P42684 1182 aa9.59□□□□□ -0.87
MCF2-206ENST00000446225 ZNF608Q9ULD9 1512 aaPredicted RBP9.59□□□□□ -0.87
MCF2-206ENST00000446225 TMEM259Q4ZIN3 620 aa9.58□□□□□ -0.88
MCF2-206ENST00000446225 MTMR14Q8NCE2 650 aa9.58□□□□□ -0.88
MCF2-206ENST00000446225 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP9.58□□□□□ -0.88
MCF2-206ENST00000446225 CACNB1Q02641 598 aaPredicted RBP9.58□□□□□ -0.88
MCF2-206ENST00000446225 SYNJ1O43426 1573 aa9.57□□□□□ -0.88
MCF2-206ENST00000446225 SND1Q7KZF4 910 aaKnown RBP eCLIP9.57□□□□□ -0.88
MCF2-206ENST00000446225 FAM217BQ9NTX9 383 aaPredicted RBP9.57□□□□□ -0.88
MCF2-206ENST00000446225 IVNS1ABPQ9Y6Y0 642 aa9.57□□□□□ -0.88
MCF2-206ENST00000446225 UPF1Q92900 1129 aaKnown RBP eCLIP9.56□□□□□ -0.88
MCF2-206ENST00000446225 TDRD9Q8NDG6 1382 aaKnown RBP9.56□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 51.1 ms