RNA–Protein interactions for RNA: ENST00000444268.1

COL28A1-204, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 5

Gene COL28A1, Length 1,755 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-204ENST00000444268 HECW2Q9P2P5 1572 aa18.09■□□□□ 0.49
COL28A1-204ENST00000444268 SLC4A1APQ9BWU0 796 aaKnown RBP18.09■□□□□ 0.49
COL28A1-204ENST00000444268 PZPP20742 1482 aa18.08■□□□□ 0.49
COL28A1-204ENST00000444268 MLH3Q9UHC1 1453 aa18.07■□□□□ 0.48
COL28A1-204ENST00000444268 KDM5DQ9BY66 1539 aa18.06■□□□□ 0.48
COL28A1-204ENST00000444268 DUOX2Q9NRD8 1548 aa18.06■□□□□ 0.48
COL28A1-204ENST00000444268 DDX10Q13206 875 aaKnown RBP18.06■□□□□ 0.48
COL28A1-204ENST00000444268 ABCA6Q8N139 1617 aa18.06■□□□□ 0.48
COL28A1-204ENST00000444268 YEATS2Q9ULM3 1422 aa18.05■□□□□ 0.48
COL28A1-204ENST00000444268 ZMYM4Q5VZL5 1548 aa18.03■□□□□ 0.48
COL28A1-204ENST00000444268 DIP2CQ9Y2E4 1556 aa18.02■□□□□ 0.48
COL28A1-204ENST00000444268 ERBINQ96RT1 1412 aa18.01■□□□□ 0.47
COL28A1-204ENST00000444268 L3MBTL2Q969R5 705 aa17.99■□□□□ 0.47
COL28A1-204ENST00000444268 DHX29Q7Z478 1369 aaKnown RBP17.99■□□□□ 0.47
COL28A1-204ENST00000444268 A2MP01023 1474 aa17.99■□□□□ 0.47
COL28A1-204ENST00000444268 CCER2I3L3R5 266 aa17.99■□□□□ 0.47
COL28A1-204ENST00000444268 ANP32CO43423 234 aa17.99■□□□□ 0.47
COL28A1-204ENST00000444268 EIF4G2P78344 907 aaKnown RBP eCLIP17.99■□□□□ 0.47
COL28A1-204ENST00000444268 FOXD1Q16676 465 aa17.96■□□□□ 0.47
COL28A1-204ENST00000444268 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.96■□□□□ 0.47
COL28A1-204ENST00000444268 NUP155O75694 1391 aa17.96■□□□□ 0.47
COL28A1-204ENST00000444268 UNC13BO14795 1591 aa17.96■□□□□ 0.47
COL28A1-204ENST00000444268 KIF3BO15066 747 aa17.95■□□□□ 0.46
COL28A1-204ENST00000444268 POLR1AO95602 1720 aaPredicted RBP17.95■□□□□ 0.46
COL28A1-204ENST00000444268 HIRIP3Q9BW71 556 aaPredicted RBP17.94■□□□□ 0.46
COL28A1-204ENST00000444268 MAGI2Q86UL8 1455 aa17.94■□□□□ 0.46
COL28A1-204ENST00000444268 HSPA5P11021 654 aaKnown RBP17.93■□□□□ 0.46
COL28A1-204ENST00000444268 SIGLEC1Q9BZZ2 1709 aa17.92■□□□□ 0.46
COL28A1-204ENST00000444268 EIF2AK4Q9P2K8 1649 aaKnown RBP17.92■□□□□ 0.46
COL28A1-204ENST00000444268 PKD2Q13563 968 aa17.92■□□□□ 0.46
COL28A1-204ENST00000444268 ARHGEF40Q8TER5 1519 aa17.91■□□□□ 0.46
COL28A1-204ENST00000444268 ATP10AO60312 1499 aa17.91■□□□□ 0.46
COL28A1-204ENST00000444268 MROH1Q8NDA8 1641 aa17.91■□□□□ 0.46
COL28A1-204ENST00000444268 DEPDC5O75140 1603 aa17.91■□□□□ 0.46
COL28A1-204ENST00000444268 FAM135AQ9P2D6 1515 aa17.9■□□□□ 0.46
COL28A1-204ENST00000444268 IQGAP3Q86VI3 1631 aa17.88■□□□□ 0.45
COL28A1-204ENST00000444268 PRDM15P57071 1507 aaPredicted RBP17.87■□□□□ 0.45
COL28A1-204ENST00000444268 RNF17Q9BXT8 1623 aaKnown RBP17.87■□□□□ 0.45
COL28A1-204ENST00000444268 GGT6Q6P531 493 aa17.86■□□□□ 0.45
COL28A1-204ENST00000444268 BCORL1Q5H9F3 1711 aa17.86■□□□□ 0.45
COL28A1-204ENST00000444268 WASHC2AQ641Q2 1341 aa17.85■□□□□ 0.45
COL28A1-204ENST00000444268 UHRF1BP1Q6BDS2 1440 aa17.85■□□□□ 0.45
COL28A1-204ENST00000444268 SPATA31E1Q6ZUB1 1445 aa17.85■□□□□ 0.45
COL28A1-204ENST00000444268 CNTLNQ9NXG0 1405 aa17.85■□□□□ 0.45
COL28A1-204ENST00000444268 PELP1Q8IZL8 1130 aaKnown RBP17.84■□□□□ 0.45
COL28A1-204ENST00000444268 VWDEQ8N2E2 1590 aa17.84■□□□□ 0.45
COL28A1-204ENST00000444268 REREQ9P2R6 1566 aa17.84■□□□□ 0.45
COL28A1-204ENST00000444268 NBPF8Q3BBV2 869 aa17.84■□□□□ 0.45
COL28A1-204ENST00000444268 CCDC7Q96M83 1385 aa17.82■□□□□ 0.44
COL28A1-204ENST00000444268 CEP152O94986 1710 aa17.82■□□□□ 0.44
COL28A1-204ENST00000444268 RALGAPBQ86X10 1494 aa17.81■□□□□ 0.44
COL28A1-204ENST00000444268 KANK1Q14678 1352 aa17.8■□□□□ 0.44
COL28A1-204ENST00000444268 AGLP35573 1532 aa17.8■□□□□ 0.44
COL28A1-204ENST00000444268 MLECQ14165 292 aa17.79■□□□□ 0.44
COL28A1-204ENST00000444268 E9PCH4 1651 aa17.78■□□□□ 0.44
COL28A1-204ENST00000444268 ARID4BQ4LE39 1312 aaPredicted RBP17.78■□□□□ 0.44
COL28A1-204ENST00000444268 TET3O43151 1660 aa17.78■□□□□ 0.44
COL28A1-204ENST00000444268 ABCC3O15438 1527 aa17.77■□□□□ 0.44
COL28A1-204ENST00000444268 CCDC144AA2RUR9 1427 aa17.76■□□□□ 0.43
COL28A1-204ENST00000444268 USP47Q96K76 1375 aa17.75■□□□□ 0.43
COL28A1-204ENST00000444268 WASHC2CQ9Y4E1 1318 aa17.75■□□□□ 0.43
COL28A1-204ENST00000444268 LMTK2Q8IWU2 1503 aa17.75■□□□□ 0.43
COL28A1-204ENST00000444268 EFCAB6Q5THR3 1501 aa17.74■□□□□ 0.43
COL28A1-204ENST00000444268 PLA2R1Q13018 1463 aa17.74■□□□□ 0.43
COL28A1-204ENST00000444268 CAMSAP1Q5T5Y3 1602 aa17.73■□□□□ 0.43
COL28A1-204ENST00000444268 KIF7Q2M1P5 1343 aa17.71■□□□□ 0.43
COL28A1-204ENST00000444268 NPATQ14207 1427 aa17.7■□□□□ 0.42
COL28A1-204ENST00000444268 CLTCQ00610 1675 aaKnown RBP17.7■□□□□ 0.42
COL28A1-204ENST00000444268 ZC3H13Q5T200 1668 aaKnown RBP17.7■□□□□ 0.42
COL28A1-204ENST00000444268 ROCK2O75116 1388 aaKnown RBP17.7■□□□□ 0.42
COL28A1-204ENST00000444268 CFAP65Q6ZU64 1925 aaKnown RBP17.68■□□□□ 0.42
COL28A1-204ENST00000444268 LAMC1P11047 1609 aa17.68■□□□□ 0.42
COL28A1-204ENST00000444268 SPHKAPQ2M3C7 1700 aa17.68■□□□□ 0.42
COL28A1-204ENST00000444268 ZNF326Q5BKZ1 582 aaKnown RBP17.68■□□□□ 0.42
COL28A1-204ENST00000444268 C11orf95C9JLR9 678 aaPredicted RBP17.67■□□□□ 0.42
COL28A1-204ENST00000444268 TRPM1Q7Z4N2 1603 aa17.67■□□□□ 0.42
COL28A1-204ENST00000444268 PTPRTO14522 1441 aa17.65■□□□□ 0.42
COL28A1-204ENST00000444268 UGGT1Q9NYU2 1555 aa17.65■□□□□ 0.42
COL28A1-204ENST00000444268 CARD11Q9BXL7 1154 aa17.65■□□□□ 0.42
COL28A1-204ENST00000444268 TRPM2O94759 1503 aa17.64■□□□□ 0.42
COL28A1-204ENST00000444268 PRAG1Q86YV5 1406 aa17.64■□□□□ 0.41
COL28A1-204ENST00000444268 DCAF11Q8TEB1 546 aa17.64■□□□□ 0.41
COL28A1-204ENST00000444268 PRKRIP1Q9H875 184 aaPredicted RBP17.64■□□□□ 0.41
COL28A1-204ENST00000444268 SUPT16HQ9Y5B9 1047 aaKnown RBP17.63■□□□□ 0.41
COL28A1-204ENST00000444268 CLTCL1P53675 1640 aa17.63■□□□□ 0.41
COL28A1-204ENST00000444268 FBXO31Q5XUX0 539 aaPredicted RBP17.62■□□□□ 0.41
COL28A1-204ENST00000444268 PPP6R1Q9UPN7 881 aa17.62■□□□□ 0.41
COL28A1-204ENST00000444268 ARHGAP31Q2M1Z3 1444 aa17.62■□□□□ 0.41
COL28A1-204ENST00000444268 ESF1Q9H501 851 aaKnown RBP17.6■□□□□ 0.41
COL28A1-204ENST00000444268 SYNMO15061 1565 aa17.6■□□□□ 0.41
COL28A1-204ENST00000444268 PREX1Q8TCU6 1659 aa17.6■□□□□ 0.41
COL28A1-204ENST00000444268 GPRASP1Q5JY77 1395 aa17.59■□□□□ 0.41
COL28A1-204ENST00000444268 NOS1P29475 1434 aa17.59■□□□□ 0.41
COL28A1-204ENST00000444268 ZMYM3Q14202 1370 aa17.58■□□□□ 0.41
COL28A1-204ENST00000444268 KDM2AQ9Y2K7 1162 aa17.58■□□□□ 0.41
COL28A1-204ENST00000444268 FER1L4A9Z1Z3 1794 aa17.58■□□□□ 0.4
COL28A1-204ENST00000444268 RGL3Q3MIN7 710 aa17.57■□□□□ 0.4
COL28A1-204ENST00000444268 STAC3Q96MF2 364 aa17.57■□□□□ 0.4
COL28A1-204ENST00000444268 ERVK-7P63135 1459 aa17.57■□□□□ 0.4
COL28A1-204ENST00000444268 NEFLP07196 543 aa17.56■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms