RNA–Protein interactions for RNA: ENST00000438796.6

LRCH3-206, Transcript of leucine rich repeats and calponin homology domain containing 3, humanhuman

APPRIS P5 TSL 2 BASIC

Gene LRCH3, Length 7,394 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3-206ENST00000438796 SF3A1Q15459 793 aaKnown RBP17.17■□□□□ 0.34
LRCH3-206ENST00000438796 CTDP1Q9Y5B0 961 aaPredicted RBP17.17■□□□□ 0.34
LRCH3-206ENST00000438796 HNRNPMP52272 730 aaKnown RBP eCLIP17.17■□□□□ 0.34
LRCH3-206ENST00000438796 NECTIN2Q92692 538 aa17.16■□□□□ 0.34
LRCH3-206ENST00000438796 SYAP1Q96A49 352 aaPredicted RBP17.16■□□□□ 0.34
LRCH3-206ENST00000438796 CUX2O14529 1486 aa17.16■□□□□ 0.34
LRCH3-206ENST00000438796 ELL2O00472 640 aaPredicted RBP17.16■□□□□ 0.34
LRCH3-206ENST00000438796 GOLGA6L1Q8N7Z2 621 aa17.15■□□□□ 0.34
LRCH3-206ENST00000438796 TRAK1Q9UPV9 953 aa17.14■□□□□ 0.33
LRCH3-206ENST00000438796 CCDC34Q96HJ3 373 aa17.14■□□□□ 0.33
LRCH3-206ENST00000438796 H3BQV1 296 aa17.14■□□□□ 0.33
LRCH3-206ENST00000438796 IFFO2Q5TF58 517 aa17.14■□□□□ 0.33
LRCH3-206ENST00000438796 HMMRO75330 724 aa17.13■□□□□ 0.33
LRCH3-206ENST00000438796 WASHC2CQ9Y4E1 1318 aa17.13■□□□□ 0.33
LRCH3-206ENST00000438796 NUP155O75694 1391 aa17.13■□□□□ 0.33
LRCH3-206ENST00000438796 PMFBP1Q8TBY8 1022 aa17.13■□□□□ 0.33
LRCH3-206ENST00000438796 CWC22Q9HCG8 908 aaKnown RBP17.13■□□□□ 0.33
LRCH3-206ENST00000438796 TERF2IPQ9NYB0 399 aa17.13■□□□□ 0.33
LRCH3-206ENST00000438796 ARHGAP35Q9NRY4 1499 aa17.13■□□□□ 0.33
LRCH3-206ENST00000438796 KIF16BQ96L93 1317 aa17.13■□□□□ 0.33
LRCH3-206ENST00000438796 PATL2C9JE40 543 aaKnown RBP17.12■□□□□ 0.33
LRCH3-206ENST00000438796 C1orf141Q5JVX7 400 aa17.12■□□□□ 0.33
LRCH3-206ENST00000438796 CARMIL1Q5VZK9 1371 aa17.12■□□□□ 0.33
LRCH3-206ENST00000438796 FHAD1B1AJZ9 1412 aa17.11■□□□□ 0.33
LRCH3-206ENST00000438796 TPM3P06753 285 aa17.11■□□□□ 0.33
LRCH3-206ENST00000438796 EIF2S2P20042 333 aaKnown RBP17.1■□□□□ 0.33
LRCH3-206ENST00000438796 CCAR2Q8N163 923 aaKnown RBP17.1■□□□□ 0.33
LRCH3-206ENST00000438796 AKAP17AQ02040 695 aaKnown RBP17.1■□□□□ 0.33
LRCH3-206ENST00000438796 TNNT3P45378 269 aaPredicted RBP17.1■□□□□ 0.33
LRCH3-206ENST00000438796 CCDC180Q9P1Z9 1646 aa17.09■□□□□ 0.33
LRCH3-206ENST00000438796 BCL2L13Q9BXK5 485 aa17.09■□□□□ 0.33
LRCH3-206ENST00000438796 MCTP1Q6DN14 999 aa17.09■□□□□ 0.33
LRCH3-206ENST00000438796 DHX16O60231 1041 aaKnown RBP17.08■□□□□ 0.32
LRCH3-206ENST00000438796 EIF3AQ14152 1382 aaKnown RBP17.08■□□□□ 0.32
LRCH3-206ENST00000438796 TNIKQ9UKE5 1360 aa17.08■□□□□ 0.32
LRCH3-206ENST00000438796 FAM184AQ8NB25 1140 aa17.08■□□□□ 0.32
LRCH3-206ENST00000438796 CSPP1Q1MSJ5 1256 aa17.08■□□□□ 0.32
LRCH3-206ENST00000438796 NOL10Q9BSC4 688 aaKnown RBP17.08■□□□□ 0.32
LRCH3-206ENST00000438796 PTMSP20962 102 aa17.07■□□□□ 0.32
LRCH3-206ENST00000438796 MPHOSPH9Q99550 1183 aa17.07■□□□□ 0.32
LRCH3-206ENST00000438796 RBM19Q9Y4C8 960 aaKnown RBP17.07■□□□□ 0.32
LRCH3-206ENST00000438796 SETD5Q9C0A6 1442 aa17.07■□□□□ 0.32
LRCH3-206ENST00000438796 VPS37DQ86XT2 251 aa17.06■□□□□ 0.32
LRCH3-206ENST00000438796 APPP05067 770 aa17.06■□□□□ 0.32
LRCH3-206ENST00000438796 PCMTD1Q96MG8 357 aaPredicted RBP17.06■□□□□ 0.32
LRCH3-206ENST00000438796 FOSBP53539 338 aa17.05■□□□□ 0.32
LRCH3-206ENST00000438796 EFCAB2Q5VUJ9 269 aa17.05■□□□□ 0.32
LRCH3-206ENST00000438796 CENPJQ9HC77 1338 aaPredicted RBP17.04■□□□□ 0.32
LRCH3-206ENST00000438796 CARMIL2Q6F5E8 1435 aa17.04■□□□□ 0.32
LRCH3-206ENST00000438796 GOLGA6L3A6NEY3 463 aa17.04■□□□□ 0.32
LRCH3-206ENST00000438796 ANKRD45Q5TZF3 282 aa17.04■□□□□ 0.32
LRCH3-206ENST00000438796 TSR1Q2NL82 804 aaKnown RBP17.03■□□□□ 0.32
LRCH3-206ENST00000438796 HDAC5Q9UQL6 1122 aa17.03■□□□□ 0.32
LRCH3-206ENST00000438796 AMOTL1Q8IY63 956 aa17.03■□□□□ 0.32
LRCH3-206ENST00000438796 CHMP4AQ9BY43 222 aa17.02■□□□□ 0.32
LRCH3-206ENST00000438796 FYB1O15117 783 aa17.02■□□□□ 0.32
LRCH3-206ENST00000438796 RALBP1Q15311 655 aa17.02■□□□□ 0.32
LRCH3-206ENST00000438796 TTC5Q8N0Z6 440 aa17.02■□□□□ 0.32
LRCH3-206ENST00000438796 ST18O60284 1047 aa17.02■□□□□ 0.31
LRCH3-206ENST00000438796 SYNE3Q6ZMZ3 975 aa17.01■□□□□ 0.31
LRCH3-206ENST00000438796 LMOD3Q0VAK6 560 aa17.01■□□□□ 0.31
LRCH3-206ENST00000438796 TCERG1O14776 1098 aaKnown RBP17■□□□□ 0.31
LRCH3-206ENST00000438796 KDM4AO75164 1064 aa17■□□□□ 0.31
LRCH3-206ENST00000438796 TPM2P07951 284 aa17■□□□□ 0.31
LRCH3-206ENST00000438796 MTMR7Q9Y216 660 aa17■□□□□ 0.31
LRCH3-206ENST00000438796 KANK4Q5T7N3 995 aaPredicted RBP16.99■□□□□ 0.31
LRCH3-206ENST00000438796 TEFQ10587 303 aa16.99■□□□□ 0.31
LRCH3-206ENST00000438796 C9orf78Q9NZ63 289 aaPredicted RBP16.99■□□□□ 0.31
LRCH3-206ENST00000438796 COG3Q96JB2 828 aa16.98■□□□□ 0.31
LRCH3-206ENST00000438796 ANKRD30AQ9BXX3 1397 aa16.97■□□□□ 0.31
LRCH3-206ENST00000438796 MINK1Q8N4C8 1332 aaPredicted RBP16.97■□□□□ 0.31
LRCH3-206ENST00000438796 GOLGA6L19H0YKK7 550 aa16.97■□□□□ 0.31
LRCH3-206ENST00000438796 PLIN1O60240 522 aa16.97■□□□□ 0.31
LRCH3-206ENST00000438796 PSME1Q06323 249 aa16.97■□□□□ 0.31
LRCH3-206ENST00000438796 PHF14O94880 888 aa16.96■□□□□ 0.31
LRCH3-206ENST00000438796 BCL11BQ9C0K0 894 aaPredicted RBP16.96■□□□□ 0.31
LRCH3-206ENST00000438796 ZNF592Q92610 1267 aa16.96■□□□□ 0.31
LRCH3-206ENST00000438796 CCER2I3L3R5 266 aa16.96■□□□□ 0.31
LRCH3-206ENST00000438796 PPP1R1BQ9UD71 204 aaPredicted RBP16.96■□□□□ 0.31
LRCH3-206ENST00000438796 KIF3AQ9Y496 699 aa16.96■□□□□ 0.31
LRCH3-206ENST00000438796 SOGA1O94964 1423 aa16.96■□□□□ 0.3
LRCH3-206ENST00000438796 SLC4A3P48751 1232 aa16.95■□□□□ 0.3
LRCH3-206ENST00000438796 TRIM29Q14134 588 aa16.95■□□□□ 0.3
LRCH3-206ENST00000438796 CCDC43Q96MW1 224 aaKnown RBP16.95■□□□□ 0.3
LRCH3-206ENST00000438796 ANO2Q9NQ90 1003 aa16.95■□□□□ 0.3
LRCH3-206ENST00000438796 NFXL1Q6ZNB6 911 aa16.94■□□□□ 0.3
LRCH3-206ENST00000438796 DIAPH3Q9NSV4 1193 aa16.94■□□□□ 0.3
LRCH3-206ENST00000438796 CYB5RLQ6IPT4 315 aa16.93■□□□□ 0.3
LRCH3-206ENST00000438796 NEXNQ0ZGT2 675 aa16.93■□□□□ 0.3
LRCH3-206ENST00000438796 TDRD9Q8NDG6 1382 aaKnown RBP16.93■□□□□ 0.3
LRCH3-206ENST00000438796 BECN2A8MW95 431 aa16.93■□□□□ 0.3
LRCH3-206ENST00000438796 NUTM2GQ5VZR2 741 aa16.93■□□□□ 0.3
LRCH3-206ENST00000438796 UTP3Q9NQZ2 479 aaKnown RBP eCLIP16.93■□□□□ 0.32e-7■■■■■ 202.9
LRCH3-206ENST00000438796 RBM33Q96EV2 1170 aaKnown RBP16.92■□□□□ 0.3
LRCH3-206ENST00000438796 CCDC27Q2M243 656 aa16.92■□□□□ 0.3
LRCH3-206ENST00000438796 ABCC8Q09428 1581 aa16.92■□□□□ 0.3
LRCH3-206ENST00000438796 FAM177BA6PVY3 158 aa16.92■□□□□ 0.3
LRCH3-206ENST00000438796 TPM1P09493 284 aa16.91■□□□□ 0.3
LRCH3-206ENST00000438796 PANK3Q9H999 370 aa16.91■□□□□ 0.3
LRCH3-206ENST00000438796 RAB3GAP2Q9H2M9 1393 aa16.9■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 52.1 ms