RNA–Protein interactions for RNA: ENST00000437607.1

PTPRF-208, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 788 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-208ENST00000437607 DISP3Q9P2K9 1392 aa19.13■□□□□ 0.65
PTPRF-208ENST00000437607 KDM5DQ9BY66 1539 aa19.13■□□□□ 0.65
PTPRF-208ENST00000437607 NEURL4Q96JN8 1562 aa19.13■□□□□ 0.65
PTPRF-208ENST00000437607 FAM135AQ9P2D6 1515 aa19.12■□□□□ 0.65
PTPRF-208ENST00000437607 PKD2Q13563 968 aa19.12■□□□□ 0.65
PTPRF-208ENST00000437607 ILDR2Q71H61 639 aa19.12■□□□□ 0.65
PTPRF-208ENST00000437607 CFAP65Q6ZU64 1925 aaKnown RBP19.11■□□□□ 0.65
PTPRF-208ENST00000437607 PZPP20742 1482 aa19.1■□□□□ 0.65
PTPRF-208ENST00000437607 RNF17Q9BXT8 1623 aaKnown RBP19.1■□□□□ 0.65
PTPRF-208ENST00000437607 KIF3BO15066 747 aa19.09■□□□□ 0.65
PTPRF-208ENST00000437607 MAST1Q9Y2H9 1570 aa19.08■□□□□ 0.65
PTPRF-208ENST00000437607 FBXO31Q5XUX0 539 aaPredicted RBP19.08■□□□□ 0.64
PTPRF-208ENST00000437607 LRRC9Q6ZRR7 1453 aa19.07■□□□□ 0.64
PTPRF-208ENST00000437607 TNRQ92752 1358 aa19.06■□□□□ 0.64
PTPRF-208ENST00000437607 ZC3H13Q5T200 1668 aaKnown RBP19.06■□□□□ 0.64
PTPRF-208ENST00000437607 CEP152O94986 1710 aa19.05■□□□□ 0.64
PTPRF-208ENST00000437607 RSPH4AQ5TD94 716 aa19.05■□□□□ 0.64
PTPRF-208ENST00000437607 EIF2AK4Q9P2K8 1649 aaKnown RBP19.04■□□□□ 0.64
PTPRF-208ENST00000437607 VPS8Q8N3P4 1428 aa19.04■□□□□ 0.64
PTPRF-208ENST00000437607 MROH1Q8NDA8 1641 aa19.03■□□□□ 0.64
PTPRF-208ENST00000437607 STRCP1A6NGW2 1772 aa19.02■□□□□ 0.64
PTPRF-208ENST00000437607 DEPDC5O75140 1603 aa19.02■□□□□ 0.64
PTPRF-208ENST00000437607 WASHC2CQ9Y4E1 1318 aa19.01■□□□□ 0.63
PTPRF-208ENST00000437607 ABCC3O15438 1527 aa19.01■□□□□ 0.63
PTPRF-208ENST00000437607 UBAP1LF5GYI3 381 aa19.01■□□□□ 0.63
PTPRF-208ENST00000437607 VWDEQ8N2E2 1590 aa19.01■□□□□ 0.63
PTPRF-208ENST00000437607 UGGT1Q9NYU2 1555 aa19.01■□□□□ 0.63
PTPRF-208ENST00000437607 MIA2Q96PC5 1412 aa19■□□□□ 0.63
PTPRF-208ENST00000437607 NLRP1Q9C000 1473 aa19■□□□□ 0.63
PTPRF-208ENST00000437607 CROCC2H7BZ55 1655 aa18.99■□□□□ 0.63
PTPRF-208ENST00000437607 IQGAP1P46940 1657 aa18.99■□□□□ 0.63
PTPRF-208ENST00000437607 CPS1P31327 1500 aa18.99■□□□□ 0.63
PTPRF-208ENST00000437607 MAP3K1Q13233 1512 aa18.99■□□□□ 0.63
PTPRF-208ENST00000437607 SHANK2Q9UPX8 1470 aa18.98■□□□□ 0.63
PTPRF-208ENST00000437607 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP18.98■□□□□ 0.633e-6■□□□□ 10.3
PTPRF-208ENST00000437607 UBR1Q8IWV7 1749 aa18.97■□□□□ 0.63
PTPRF-208ENST00000437607 SOCS7O14512 581 aa18.97■□□□□ 0.63
PTPRF-208ENST00000437607 TSPY4P0CV99 314 aa18.97■□□□□ 0.63
PTPRF-208ENST00000437607 TSPY10P0CW01 314 aa18.97■□□□□ 0.63
PTPRF-208ENST00000437607 KANK4Q5T7N3 995 aaPredicted RBP18.97■□□□□ 0.63
PTPRF-208ENST00000437607 MED14O60244 1454 aa18.97■□□□□ 0.63
PTPRF-208ENST00000437607 MYOM3Q5VTT5 1437 aa18.95■□□□□ 0.62
PTPRF-208ENST00000437607 ALKQ9UM73 1620 aa18.95■□□□□ 0.62
PTPRF-208ENST00000437607 ERVK-7P63135 1459 aa18.93■□□□□ 0.62
PTPRF-208ENST00000437607 NPHP4O75161 1426 aaPredicted RBP18.92■□□□□ 0.62
PTPRF-208ENST00000437607 ANKLE2Q86XL3 938 aa18.92■□□□□ 0.62
PTPRF-208ENST00000437607 THEMISQ8N1K5 641 aaPredicted RBP18.92■□□□□ 0.62
PTPRF-208ENST00000437607 DUOX2Q9NRD8 1548 aa18.91■□□□□ 0.62
PTPRF-208ENST00000437607 XIRP1Q702N8 1843 aaKnown RBP18.9■□□□□ 0.62
PTPRF-208ENST00000437607 PTPN23Q9H3S7 1636 aa18.89■□□□□ 0.62
PTPRF-208ENST00000437607 PRDM15P57071 1507 aaPredicted RBP18.89■□□□□ 0.61
PTPRF-208ENST00000437607 SYNMO15061 1565 aa18.87■□□□□ 0.61
PTPRF-208ENST00000437607 MED1Q15648 1581 aaPredicted RBP18.86■□□□□ 0.61
PTPRF-208ENST00000437607 HSPA1LP34931 641 aa18.85■□□□□ 0.61
PTPRF-208ENST00000437607 PIP4K2BP78356 416 aa18.85■□□□□ 0.61
PTPRF-208ENST00000437607 ABCC5O15440 1437 aa18.84■□□□□ 0.61
PTPRF-208ENST00000437607 PIK3C2BO00750 1634 aa18.84■□□□□ 0.61
PTPRF-208ENST00000437607 LRRC7Q96NW7 1537 aa18.84■□□□□ 0.61
PTPRF-208ENST00000437607 TOM1O60784 492 aa18.83■□□□□ 0.6
PTPRF-208ENST00000437607 KIF15Q9NS87 1388 aa18.82■□□□□ 0.6
PTPRF-208ENST00000437607 SCAF1Q9H7N4 1312 aaKnown RBP18.82■□□□□ 0.6
PTPRF-208ENST00000437607 SLIT1O75093 1534 aa18.82■□□□□ 0.6
PTPRF-208ENST00000437607 ARHGAP23Q9P227 1491 aa18.82■□□□□ 0.6
PTPRF-208ENST00000437607 ARHGAP31Q2M1Z3 1444 aa18.82■□□□□ 0.6
PTPRF-208ENST00000437607 ERBINQ96RT1 1412 aa18.82■□□□□ 0.6
PTPRF-208ENST00000437607 KDM5AP29375 1690 aaKnown RBP18.8■□□□□ 0.6
PTPRF-208ENST00000437607 DAPK1P53355 1430 aa18.8■□□□□ 0.6
PTPRF-208ENST00000437607 SCAF11Q99590 1463 aaKnown RBP18.79■□□□□ 0.6
PTPRF-208ENST00000437607 APLP2Q06481 763 aa18.79■□□□□ 0.6
PTPRF-208ENST00000437607 MYO5BQ9ULV0 1848 aa18.77■□□□□ 0.59
PTPRF-208ENST00000437607 LTKP29376 864 aa18.76■□□□□ 0.59
PTPRF-208ENST00000437607 RRP7BPQ9NSQ0 103 aa18.76■□□□□ 0.59
PTPRF-208ENST00000437607 FGD6Q6ZV73 1430 aa18.75■□□□□ 0.59
PTPRF-208ENST00000437607 LMTK2Q8IWU2 1503 aa18.74■□□□□ 0.59
PTPRF-208ENST00000437607 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.71■□□□□ 0.59
PTPRF-208ENST00000437607 EFCAB6Q5THR3 1501 aa18.7■□□□□ 0.58
PTPRF-208ENST00000437607 TXNDC2Q86VQ3 553 aa18.7■□□□□ 0.58
PTPRF-208ENST00000437607 TET3O43151 1660 aa18.69■□□□□ 0.58
PTPRF-208ENST00000437607 TMEM2Q9UHN6 1383 aa18.68■□□□□ 0.58
PTPRF-208ENST00000437607 CHIC2Q9UKJ5 165 aa18.68■□□□□ 0.58
PTPRF-208ENST00000437607 KANK1Q14678 1352 aa18.68■□□□□ 0.58
PTPRF-208ENST00000437607 ADGRL2O95490 1459 aa18.67■□□□□ 0.58
PTPRF-208ENST00000437607 ANKRD30AQ9BXX3 1397 aa18.67■□□□□ 0.58
PTPRF-208ENST00000437607 ADGRB3O60242 1522 aa18.66■□□□□ 0.58
PTPRF-208ENST00000437607 GCC2Q8IWJ2 1684 aa18.66■□□□□ 0.58
PTPRF-208ENST00000437607 NOS1P29475 1434 aa18.66■□□□□ 0.58
PTPRF-208ENST00000437607 IDI1Q13907 227 aa18.65■□□□□ 0.58
PTPRF-208ENST00000437607 SENP3Q9H4L4 574 aaPredicted RBP18.65■□□□□ 0.58
PTPRF-208ENST00000437607 EID1Q9Y6B2 187 aa18.64■□□□□ 0.57
PTPRF-208ENST00000437607 CHD2O14647 1828 aaKnown RBP18.63■□□□□ 0.57
PTPRF-208ENST00000437607 NWD1Q149M9 1564 aa18.62■□□□□ 0.57
PTPRF-208ENST00000437607 ROBO1Q9Y6N7 1651 aa18.61■□□□□ 0.57
PTPRF-208ENST00000437607 STAG3Q9UJ98 1225 aa18.59■□□□□ 0.57
PTPRF-208ENST00000437607 TMEM131LA2VDJ0 1609 aa18.59■□□□□ 0.57
PTPRF-208ENST00000437607 UNC13BO14795 1591 aa18.59■□□□□ 0.57
PTPRF-208ENST00000437607 E9PCH4 1651 aa18.58■□□□□ 0.57
PTPRF-208ENST00000437607 RPRD2Q5VT52 1461 aaKnown RBP18.58■□□□□ 0.56
PTPRF-208ENST00000437607 TMEM94Q12767 1356 aa18.57■□□□□ 0.56
PTPRF-208ENST00000437607 KCNA6P17658 529 aa18.56■□□□□ 0.56
PTPRF-208ENST00000437607 PPARGC1BQ86YN6 1023 aaKnown RBP18.56■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms