RNA–Protein interactions for RNA: ENST00000436724.5

PTPRF-207, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 2,168 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-207ENST00000436724 KDM5CP41229 1560 aa30.14■■■□□ 2.42
PTPRF-207ENST00000436724 RAPGEF3O95398 923 aa30.14■■■□□ 2.42
PTPRF-207ENST00000436724 DHX29Q7Z478 1369 aaKnown RBP30.11■■■□□ 2.41
PTPRF-207ENST00000436724 KIF3BO15066 747 aa30.1■■■□□ 2.41
PTPRF-207ENST00000436724 NBPF8Q3BBV2 869 aa30.07■■■□□ 2.4
PTPRF-207ENST00000436724 DEPDC5O75140 1603 aa30.07■■■□□ 2.4
PTPRF-207ENST00000436724 MLH3Q9UHC1 1453 aa30.07■■■□□ 2.4
PTPRF-207ENST00000436724 HECW2Q9P2P5 1572 aa30.07■■■□□ 2.4
PTPRF-207ENST00000436724 SCAF1Q9H7N4 1312 aaKnown RBP30.07■■■□□ 2.4
PTPRF-207ENST00000436724 PLA2R1Q13018 1463 aa30.06■■■□□ 2.4
PTPRF-207ENST00000436724 TSPOAP1O95153 1857 aa30.05■■■□□ 2.4
PTPRF-207ENST00000436724 A2MP01023 1474 aa30.02■■■□□ 2.4
PTPRF-207ENST00000436724 EIF2AK4Q9P2K8 1649 aaKnown RBP30.02■■■□□ 2.4
PTPRF-207ENST00000436724 RICTORQ6R327 1708 aa30■■■□□ 2.39
PTPRF-207ENST00000436724 CCDC144AA2RUR9 1427 aa30■■■□□ 2.39
PTPRF-207ENST00000436724 ABCA6Q8N139 1617 aa30■■■□□ 2.39
PTPRF-207ENST00000436724 MROH1Q8NDA8 1641 aa29.99■■■□□ 2.39
PTPRF-207ENST00000436724 FRMPD1Q5SYB0 1578 aa29.98■■■□□ 2.39
PTPRF-207ENST00000436724 PPRC1Q5VV67 1664 aaKnown RBP29.98■■■□□ 2.39
PTPRF-207ENST00000436724 E9PCH4 1651 aa29.97■■■□□ 2.39
PTPRF-207ENST00000436724 MIER1Q8N108 512 aa29.97■■■□□ 2.39
PTPRF-207ENST00000436724 PRDM15P57071 1507 aaPredicted RBP29.96■■■□□ 2.39
PTPRF-207ENST00000436724 VWDEQ8N2E2 1590 aa29.95■■■□□ 2.39
PTPRF-207ENST00000436724 KANK1Q14678 1352 aa29.95■■■□□ 2.39
PTPRF-207ENST00000436724 ZNF326Q5BKZ1 582 aaKnown RBP29.95■■■□□ 2.38
PTPRF-207ENST00000436724 KIF13AQ9H1H9 1805 aa29.92■■■□□ 2.38
PTPRF-207ENST00000436724 ATP10AO60312 1499 aa29.92■■■□□ 2.38
PTPRF-207ENST00000436724 TET3O43151 1660 aa29.91■■■□□ 2.38
PTPRF-207ENST00000436724 HSPA5P11021 654 aaKnown RBP29.9■■■□□ 2.38
PTPRF-207ENST00000436724 DIP2CQ9Y2E4 1556 aa29.9■■■□□ 2.38
PTPRF-207ENST00000436724 KDM2AQ9Y2K7 1162 aa29.9■■■□□ 2.38
PTPRF-207ENST00000436724 YEATS2Q9ULM3 1422 aa29.89■■■□□ 2.38
PTPRF-207ENST00000436724 DCAF11Q8TEB1 546 aa29.89■■■□□ 2.38
PTPRF-207ENST00000436724 RGL3Q3MIN7 710 aa29.88■■■□□ 2.37
PTPRF-207ENST00000436724 GGT6Q6P531 493 aa29.87■■■□□ 2.37
PTPRF-207ENST00000436724 RNF17Q9BXT8 1623 aaKnown RBP29.86■■■□□ 2.37
PTPRF-207ENST00000436724 EIF4G2P78344 907 aaKnown RBP eCLIP29.86■■■□□ 2.375e-7■■■■■ 27
PTPRF-207ENST00000436724 DDX10Q13206 875 aaKnown RBP29.85■■■□□ 2.37
PTPRF-207ENST00000436724 CEP152O94986 1710 aa29.82■■■□□ 2.36
PTPRF-207ENST00000436724 SPHKAPQ2M3C7 1700 aa29.82■■■□□ 2.36
PTPRF-207ENST00000436724 UHRF1BP1Q6BDS2 1440 aa29.82■■■□□ 2.36
PTPRF-207ENST00000436724 PTPRTO14522 1441 aa29.81■■■□□ 2.36
PTPRF-207ENST00000436724 TRPM2O94759 1503 aa29.8■■■□□ 2.36
PTPRF-207ENST00000436724 BCORL1Q5H9F3 1711 aa29.79■■■□□ 2.36
PTPRF-207ENST00000436724 EFCAB6Q5THR3 1501 aa29.78■■■□□ 2.36
PTPRF-207ENST00000436724 ZMYM4Q5VZL5 1548 aa29.78■■■□□ 2.36
PTPRF-207ENST00000436724 LMTK2Q8IWU2 1503 aa29.75■■■□□ 2.35
PTPRF-207ENST00000436724 CLTCL1P53675 1640 aa29.74■■■□□ 2.35
PTPRF-207ENST00000436724 SPATA31E1Q6ZUB1 1445 aa29.73■■■□□ 2.35
PTPRF-207ENST00000436724 COL17A1Q9UMD9 1497 aaPredicted RBP29.73■■■□□ 2.35
PTPRF-207ENST00000436724 RALGAPBQ86X10 1494 aa29.72■■■□□ 2.35
PTPRF-207ENST00000436724 WASHC2CQ9Y4E1 1318 aa29.72■■■□□ 2.35
PTPRF-207ENST00000436724 CENPBP07199 599 aaPredicted RBP29.71■■■□□ 2.35
PTPRF-207ENST00000436724 UGGT1Q9NYU2 1555 aa29.7■■■□□ 2.35
PTPRF-207ENST00000436724 PRAG1Q86YV5 1406 aa29.69■■■□□ 2.34
PTPRF-207ENST00000436724 WASHC2AQ641Q2 1341 aa29.69■■■□□ 2.34
PTPRF-207ENST00000436724 ABCC3O15438 1527 aa29.69■■■□□ 2.34
PTPRF-207ENST00000436724 NPATQ14207 1427 aa29.68■■■□□ 2.34
PTPRF-207ENST00000436724 USP47Q96K76 1375 aa29.67■■■□□ 2.34
PTPRF-207ENST00000436724 C11orf95C9JLR9 678 aaPredicted RBP29.67■■■□□ 2.34
PTPRF-207ENST00000436724 CFAP65Q6ZU64 1925 aaKnown RBP29.67■■■□□ 2.34
PTPRF-207ENST00000436724 CARD11Q9BXL7 1154 aa29.66■■■□□ 2.34
PTPRF-207ENST00000436724 TRPM1Q7Z4N2 1603 aa29.62■■■□□ 2.33
PTPRF-207ENST00000436724 ROCK2O75116 1388 aaKnown RBP29.61■■■□□ 2.33
PTPRF-207ENST00000436724 CAMSAP1Q5T5Y3 1602 aa29.61■■■□□ 2.33
PTPRF-207ENST00000436724 NBPF1Q3BBV0 1214 aa29.59■■■□□ 2.33
PTPRF-207ENST00000436724 CCDC7Q96M83 1385 aa29.55■■■□□ 2.32
PTPRF-207ENST00000436724 SIGLEC1Q9BZZ2 1709 aa29.55■■■□□ 2.32
PTPRF-207ENST00000436724 KIF1BO60333 1816 aa29.53■■■□□ 2.32
PTPRF-207ENST00000436724 ZC3H13Q5T200 1668 aaKnown RBP29.52■■■□□ 2.32
PTPRF-207ENST00000436724 REREQ9P2R6 1566 aa29.52■■■□□ 2.32
PTPRF-207ENST00000436724 YTHDC1Q96MU7 727 aaKnown RBP29.52■■■□□ 2.32
PTPRF-207ENST00000436724 KIF7Q2M1P5 1343 aa29.51■■■□□ 2.32
PTPRF-207ENST00000436724 MROH2AA6NES4 1674 aa29.5■■■□□ 2.31
PTPRF-207ENST00000436724 CNTLNQ9NXG0 1405 aa29.5■■■□□ 2.31
PTPRF-207ENST00000436724 ST20-MTHFSA0A0A6YYL1 179 aa29.5■■■□□ 2.31
PTPRF-207ENST00000436724 MADDQ8WXG6 1647 aa29.5■■■□□ 2.31
PTPRF-207ENST00000436724 GTF3C3Q9Y5Q9 886 aa29.49■■■□□ 2.31
PTPRF-207ENST00000436724 ARHGEF40Q8TER5 1519 aa29.49■■■□□ 2.31
PTPRF-207ENST00000436724 NEURL4Q96JN8 1562 aa29.48■■■□□ 2.31
PTPRF-207ENST00000436724 CHGAP10645 457 aaKnown RBP29.48■■■□□ 2.31
PTPRF-207ENST00000436724 GPRASP1Q5JY77 1395 aa29.48■■■□□ 2.31
PTPRF-207ENST00000436724 NOS1P29475 1434 aa29.48■■■□□ 2.31
PTPRF-207ENST00000436724 AGLP35573 1532 aa29.48■■■□□ 2.31
PTPRF-207ENST00000436724 POLR1AO95602 1720 aaPredicted RBP29.47■■■□□ 2.31
PTPRF-207ENST00000436724 ARHGAP31Q2M1Z3 1444 aa29.47■■■□□ 2.31
PTPRF-207ENST00000436724 TRHP20396 242 aaPredicted RBP29.45■■■□□ 2.31
PTPRF-207ENST00000436724 MLECQ14165 292 aa29.45■■■□□ 2.31
PTPRF-207ENST00000436724 SYNMO15061 1565 aa29.45■■■□□ 2.3
PTPRF-207ENST00000436724 ADGRB3O60242 1522 aa29.44■■■□□ 2.3
PTPRF-207ENST00000436724 ANP32CO43423 234 aa29.41■■■□□ 2.3
PTPRF-207ENST00000436724 STAC3Q96MF2 364 aa29.41■■■□□ 2.3
PTPRF-207ENST00000436724 POLR3GLQ9BT43 218 aa29.4■■■□□ 2.3
PTPRF-207ENST00000436724 LAMC1P11047 1609 aa29.4■■■□□ 2.3
PTPRF-207ENST00000436724 ADGRF5Q8IZF2 1346 aa29.39■■■□□ 2.3
PTPRF-207ENST00000436724 IFT172Q9UG01 1749 aa29.39■■■□□ 2.29
PTPRF-207ENST00000436724 PIK3C2BO00750 1634 aa29.38■■■□□ 2.29
PTPRF-207ENST00000436724 FBXO31Q5XUX0 539 aaPredicted RBP29.37■■■□□ 2.29
PTPRF-207ENST00000436724 PREX1Q8TCU6 1659 aa29.36■■■□□ 2.29
PTPRF-207ENST00000436724 MYOM2P54296 1465 aa29.35■■■□□ 2.29
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms