RNA–Protein interactions for RNA: ENST00000430086.1

CCDC88A-206, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 582 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-206ENST00000430086 TSR1Q2NL82 804 aaKnown RBP13.36□□□□□ -0.27
CCDC88A-206ENST00000430086 PTPREP23469 700 aa13.34□□□□□ -0.27
CCDC88A-206ENST00000430086 GPR37O15354 613 aa13.33□□□□□ -0.28
CCDC88A-206ENST00000430086 CDHR5Q9HBB8 845 aa13.33□□□□□ -0.28
CCDC88A-206ENST00000430086 PBX2P40425 430 aa13.32□□□□□ -0.28
CCDC88A-206ENST00000430086 PTGDRQ13258 359 aa13.32□□□□□ -0.28
CCDC88A-206ENST00000430086 CERKQ8TCT0 537 aa13.32□□□□□ -0.28
CCDC88A-206ENST00000430086 ZC3H15Q8WU90 426 aaKnown RBP13.32□□□□□ -0.28
CCDC88A-206ENST00000430086 NPDC1Q9NQX5 325 aaPredicted RBP13.32□□□□□ -0.28
CCDC88A-206ENST00000430086 FCHSD2O94868 740 aa13.31□□□□□ -0.28
CCDC88A-206ENST00000430086 ARHGAP33O14559 1287 aa13.3□□□□□ -0.28
CCDC88A-206ENST00000430086 POTEEQ6S8J3 1075 aa13.3□□□□□ -0.28
CCDC88A-206ENST00000430086 PPP1R3GB7ZBB8 358 aa13.29□□□□□ -0.28
CCDC88A-206ENST00000430086 KCNH8Q96L42 1107 aa13.29□□□□□ -0.28
CCDC88A-206ENST00000430086 HIC1Q14526 733 aa13.28□□□□□ -0.28
CCDC88A-206ENST00000430086 KCNK17Q96T54 332 aa13.28□□□□□ -0.28
CCDC88A-206ENST00000430086 COL9A1P20849 921 aa13.27□□□□□ -0.29
CCDC88A-206ENST00000430086 POTEMA6NI47 508 aa13.26□□□□□ -0.29
CCDC88A-206ENST00000430086 ZMYND10O75800 440 aa13.26□□□□□ -0.29
CCDC88A-206ENST00000430086 TPRNQ4KMQ1 711 aa13.26□□□□□ -0.29
CCDC88A-206ENST00000430086 POTEGQ6S5H5 508 aa13.26□□□□□ -0.29
CCDC88A-206ENST00000430086 GNPATO15228 680 aa13.25□□□□□ -0.29
CCDC88A-206ENST00000430086 PSEN2P49810 448 aa13.25□□□□□ -0.29
CCDC88A-206ENST00000430086 RBM27Q9P2N5 1060 aaKnown RBP13.24□□□□□ -0.29
CCDC88A-206ENST00000430086 BARGINQ6ZT62 677 aa13.23□□□□□ -0.29
CCDC88A-206ENST00000430086 AXIN2Q9Y2T1 843 aa13.23□□□□□ -0.29
CCDC88A-206ENST00000430086 PRSS12P56730 875 aa13.21□□□□□ -0.29
CCDC88A-206ENST00000430086 SLC4A5Q9BY07 1137 aa13.21□□□□□ -0.29
CCDC88A-206ENST00000430086 DMRTA1Q5VZB9 504 aa13.2□□□□□ -0.3
CCDC88A-206ENST00000430086 ZBED2Q9BTP6 218 aa13.2□□□□□ -0.3
CCDC88A-206ENST00000430086 ONECUT3O60422 494 aaPredicted RBP13.19□□□□□ -0.3
CCDC88A-206ENST00000430086 TTC13Q8NBP0 860 aa13.19□□□□□ -0.3
CCDC88A-206ENST00000430086 CDCA7LQ96GN5 454 aa13.19□□□□□ -0.3
CCDC88A-206ENST00000430086 PCDH10Q9P2E7 1040 aa13.19□□□□□ -0.3
CCDC88A-206ENST00000430086 FECHP22830 423 aa13.17□□□□□ -0.3
CCDC88A-206ENST00000430086 TRIM6-TRIM34B2RNG4 842 aa13.16□□□□□ -0.3
CCDC88A-206ENST00000430086 PADI6Q6TGC4 694 aa13.16□□□□□ -0.3
CCDC88A-206ENST00000430086 TK2O00142 265 aa13.15□□□□□ -0.3
CCDC88A-206ENST00000430086 PRKCSHP14314 528 aaPredicted RBP13.15□□□□□ -0.3
CCDC88A-206ENST00000430086 LSM11P83369 360 aaKnown RBP eCLIP13.15□□□□□ -0.3
CCDC88A-206ENST00000430086 MAP2K5Q13163 448 aa13.15□□□□□ -0.3
CCDC88A-206ENST00000430086 MINK1Q8N4C8 1332 aaPredicted RBP13.14□□□□□ -0.31
CCDC88A-206ENST00000430086 PROX2Q3B8N5 592 aa13.14□□□□□ -0.31
CCDC88A-206ENST00000430086 CDAN1Q8IWY9 1227 aa13.14□□□□□ -0.31
CCDC88A-206ENST00000430086 KRTAP3-3Q9BYR6 98 aa13.14□□□□□ -0.31
CCDC88A-206ENST00000430086 KRTAP3-2Q9BYR7 98 aa13.14□□□□□ -0.31
CCDC88A-206ENST00000430086 TSKSQ9UJT2 592 aa13.14□□□□□ -0.31
CCDC88A-206ENST00000430086 FAM198AQ9UFP1 575 aa13.13□□□□□ -0.31
CCDC88A-206ENST00000430086 VPS9D1Q9Y2B5 631 aa13.12□□□□□ -0.31
CCDC88A-206ENST00000430086 IRF6O14896 467 aa13.11□□□□□ -0.31
CCDC88A-206ENST00000430086 KRI1Q8N9T8 703 aaKnown RBP13.11□□□□□ -0.31
CCDC88A-206ENST00000430086 PLSCR2Q9NRY7 297 aa13.11□□□□□ -0.31
CCDC88A-206ENST00000430086 PACS2Q86VP3 889 aa13.1□□□□□ -0.31
CCDC88A-206ENST00000430086 RABGEF1Q9UJ41 708 aa13.1□□□□□ -0.31
CCDC88A-206ENST00000430086 ADGRD1Q6QNK2 874 aa13.08□□□□□ -0.32
CCDC88A-206ENST00000430086 KIAA1468Q9P260 1216 aa13.08□□□□□ -0.32
CCDC88A-206ENST00000430086 ADGRG1Q9Y653 693 aa13.08□□□□□ -0.32
CCDC88A-206ENST00000430086 SLC24A3Q9HC58 644 aa13.07□□□□□ -0.32
CCDC88A-206ENST00000430086 NBPF26B4DH59 902 aa13.06□□□□□ -0.32
CCDC88A-206ENST00000430086 ANKRD13DQ6ZTN6 518 aa13.06□□□□□ -0.32
CCDC88A-206ENST00000430086 AK7Q96M32 723 aa13.06□□□□□ -0.32
CCDC88A-206ENST00000430086 OATP04181 439 aa13.05□□□□□ -0.32
CCDC88A-206ENST00000430086 TATDN2Q93075 761 aa13.05□□□□□ -0.32
CCDC88A-206ENST00000430086 CCDC102AQ96A19 550 aa13.05□□□□□ -0.32
CCDC88A-206ENST00000430086 BHMG1C9JSJ3 638 aaPredicted RBP13.04□□□□□ -0.32
CCDC88A-206ENST00000430086 HRO43593 1189 aa13.04□□□□□ -0.32
CCDC88A-206ENST00000430086 RBM46Q8TBY0 533 aaKnown RBP13.03□□□□□ -0.32
CCDC88A-206ENST00000430086 EYA1Q99502 592 aa13.03□□□□□ -0.32
CCDC88A-206ENST00000430086 C3orf80F5H4A9 247 aa13.02□□□□□ -0.33
CCDC88A-206ENST00000430086 NUDT18Q6ZVK8 323 aa13.02□□□□□ -0.33
CCDC88A-206ENST00000430086 PNMA3Q9UL41 463 aa13.02□□□□□ -0.33
CCDC88A-206ENST00000430086 FAM161AQ3B820 660 aa13.01□□□□□ -0.33
CCDC88A-206ENST00000430086 METTL3Q86U44 580 aaKnown RBP13.01□□□□□ -0.33
CCDC88A-206ENST00000430086 PXYLP1Q8TE99 480 aa13.01□□□□□ -0.33
CCDC88A-206ENST00000430086 NBPF3Q9H094 633 aa13.01□□□□□ -0.33
CCDC88A-206ENST00000430086 LAPTM4BQ86VI4 370 aa12.99□□□□□ -0.33
CCDC88A-206ENST00000430086 TRIM66O15016 1216 aa12.98□□□□□ -0.33
CCDC88A-206ENST00000430086 SMAPO00193 183 aa12.97□□□□□ -0.33
CCDC88A-206ENST00000430086 FAM98CQ17RN3 349 aaKnown RBP12.96□□□□□ -0.33
CCDC88A-206ENST00000430086 PHOX2BQ99453 314 aa12.96□□□□□ -0.33
CCDC88A-206ENST00000430086 SEPT9Q9UHD8 586 aaPredicted RBP12.96□□□□□ -0.33
CCDC88A-206ENST00000430086 AMHR2Q16671 573 aa12.95□□□□□ -0.34
CCDC88A-206ENST00000430086 MRPL50Q8N5N7 158 aaKnown RBP12.95□□□□□ -0.34
CCDC88A-206ENST00000430086 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.94□□□□□ -0.34
CCDC88A-206ENST00000430086 RCCD1A6NED2 376 aa12.93□□□□□ -0.34
CCDC88A-206ENST00000430086 STAC3Q96MF2 364 aa12.93□□□□□ -0.34
CCDC88A-206ENST00000430086 DNAJB2P25686 324 aa12.92□□□□□ -0.34
CCDC88A-206ENST00000430086 PDE4DQ08499 809 aa12.9□□□□□ -0.34
CCDC88A-206ENST00000430086 ZFRQ96KR1 1074 aaKnown RBP12.89□□□□□ -0.35
CCDC88A-206ENST00000430086 TMEM134Q9H6X4 195 aa12.89□□□□□ -0.35
CCDC88A-206ENST00000430086 TMUB1Q9BVT8 246 aa12.87□□□□□ -0.35
CCDC88A-206ENST00000430086 CLCN1P35523 988 aa12.86□□□□□ -0.35
CCDC88A-206ENST00000430086 DAXXQ9UER7 740 aaPredicted RBP12.86□□□□□ -0.35
CCDC88A-206ENST00000430086 MDM2Q00987 491 aaPredicted RBP12.85□□□□□ -0.35
CCDC88A-206ENST00000430086 NLRP7Q8WX94 980 aa12.85□□□□□ -0.35
CCDC88A-206ENST00000430086 GPCPD1Q9NPB8 672 aa12.85□□□□□ -0.35
CCDC88A-206ENST00000430086 GOLGA8CPA6NN73 597 aa12.84□□□□□ -0.35
CCDC88A-206ENST00000430086 HDGFP51858 240 aaKnown RBP12.84□□□□□ -0.35
CCDC88A-206ENST00000430086 TTLL12Q14166 644 aaPredicted RBP12.83□□□□□ -0.36
CCDC88A-206ENST00000430086 PARP9Q8IXQ6 854 aa12.83□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms