RNA–Protein interactions for RNA: ENST00000428726.6

CD44-208, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CD44, Length 3,046 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-208ENST00000428726 CNTLNQ9NXG0 1405 aa11.42□□□□□ -0.58
CD44-208ENST00000428726 CDC42BPBQ9Y5S2 1711 aa11.42□□□□□ -0.58
CD44-208ENST00000428726 ARHGAP5Q13017 1502 aa11.42□□□□□ -0.58
CD44-208ENST00000428726 CCDC141Q6ZP82 1450 aa11.41□□□□□ -0.58
CD44-208ENST00000428726 PLEKHH2Q8IVE3 1493 aa11.41□□□□□ -0.58
CD44-208ENST00000428726 SAMD9LQ8IVG5 1584 aa11.41□□□□□ -0.58
CD44-208ENST00000428726 SPATA31E1Q6ZUB1 1445 aa11.4□□□□□ -0.58
CD44-208ENST00000428726 RBM19Q9Y4C8 960 aaKnown RBP11.4□□□□□ -0.58
CD44-208ENST00000428726 ANP32EQ9BTT0 268 aa11.4□□□□□ -0.58
CD44-208ENST00000428726 ABCC2Q92887 1545 aa11.4□□□□□ -0.59
CD44-208ENST00000428726 EFCAB2Q5VUJ9 269 aa11.39□□□□□ -0.59
CD44-208ENST00000428726 CYB5RLQ6IPT4 315 aa11.39□□□□□ -0.59
CD44-208ENST00000428726 POLR1AO95602 1720 aaPredicted RBP11.39□□□□□ -0.59
CD44-208ENST00000428726 RAPGEF3O95398 923 aa11.38□□□□□ -0.59
CD44-208ENST00000428726 SPAG9O60271 1321 aaKnown RBP11.38□□□□□ -0.59
CD44-208ENST00000428726 SYCP2Q9BX26 1530 aa11.38□□□□□ -0.59
CD44-208ENST00000428726 SKAP1Q86WV1 359 aa11.37□□□□□ -0.59
CD44-208ENST00000428726 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP11.37□□□□□ -0.59
CD44-208ENST00000428726 TRAPPC8Q9Y2L5 1435 aa11.37□□□□□ -0.59
CD44-208ENST00000428726 TTC37Q6PGP7 1564 aa11.37□□□□□ -0.59
CD44-208ENST00000428726 PANK3Q9H999 370 aa11.36□□□□□ -0.59
CD44-208ENST00000428726 MAST1Q9Y2H9 1570 aa11.36□□□□□ -0.59
CD44-208ENST00000428726 ARHGEF12Q9NZN5 1544 aa11.36□□□□□ -0.59
CD44-208ENST00000428726 MYO5CQ9NQX4 1742 aa11.36□□□□□ -0.59
CD44-208ENST00000428726 UHRF1BP1Q6BDS2 1440 aa11.36□□□□□ -0.59
CD44-208ENST00000428726 MLECQ14165 292 aa11.35□□□□□ -0.59
CD44-208ENST00000428726 TMEM132EQ6IEE7 984 aa11.35□□□□□ -0.59
CD44-208ENST00000428726 CDCA7LQ96GN5 454 aa11.35□□□□□ -0.59
CD44-208ENST00000428726 SCAPERQ9BY12 1400 aa11.35□□□□□ -0.59
CD44-208ENST00000428726 PLIN1O60240 522 aa11.35□□□□□ -0.59
CD44-208ENST00000428726 CCDC144AA2RUR9 1427 aa11.34□□□□□ -0.59
CD44-208ENST00000428726 CLASP1Q7Z460 1538 aa11.34□□□□□ -0.59
CD44-208ENST00000428726 CFAP70Q5T0N1 1121 aa11.34□□□□□ -0.59
CD44-208ENST00000428726 NPM1P06748 294 aaKnown RBP eCLIP11.33□□□□□ -0.6
CD44-208ENST00000428726 UHRF1BP1LA0JNW5 1464 aa11.33□□□□□ -0.6
CD44-208ENST00000428726 FAM135AQ9P2D6 1515 aa11.33□□□□□ -0.6
CD44-208ENST00000428726 ARID4BQ4LE39 1312 aaPredicted RBP11.32□□□□□ -0.6
CD44-208ENST00000428726 RALGAPBQ86X10 1494 aa11.32□□□□□ -0.6
CD44-208ENST00000428726 KDM5CP41229 1560 aa11.32□□□□□ -0.6
CD44-208ENST00000428726 CCDC146Q8IYE0 955 aa11.32□□□□□ -0.6
CD44-208ENST00000428726 PLXNC1O60486 1568 aa11.31□□□□□ -0.6
CD44-208ENST00000428726 STK26Q9P289 416 aa11.31□□□□□ -0.6
CD44-208ENST00000428726 TRAK1Q9UPV9 953 aa11.31□□□□□ -0.6
CD44-208ENST00000428726 ZCCHC11Q5TAX3 1644 aaKnown RBP11.31□□□□□ -0.6
CD44-208ENST00000428726 NEUROD2Q15784 382 aa11.31□□□□□ -0.6
CD44-208ENST00000428726 UNC13BO14795 1591 aa11.31□□□□□ -0.6
CD44-208ENST00000428726 PLCH2O75038 1416 aa11.31□□□□□ -0.6
CD44-208ENST00000428726 CFAP65Q6ZU64 1925 aaKnown RBP11.3□□□□□ -0.6
CD44-208ENST00000428726 DISP3Q9P2K9 1392 aa11.3□□□□□ -0.6
CD44-208ENST00000428726 MSH5O43196 834 aa11.29□□□□□ -0.6
CD44-208ENST00000428726 BCORL1Q5H9F3 1711 aa11.29□□□□□ -0.6
CD44-208ENST00000428726 DUOX2Q9NRD8 1548 aa11.28□□□□□ -0.6
CD44-208ENST00000428726 DHX29Q7Z478 1369 aaKnown RBP11.28□□□□□ -0.6
CD44-208ENST00000428726 OSCARQ8IYS5 282 aa11.27□□□□□ -0.6
CD44-208ENST00000428726 PNISRQ8TF01 805 aaKnown RBP11.27□□□□□ -0.6
CD44-208ENST00000428726 IQGAP3Q86VI3 1631 aa11.27□□□□□ -0.61
CD44-208ENST00000428726 ERBINQ96RT1 1412 aa11.26□□□□□ -0.61
CD44-208ENST00000428726 ADGRF5Q8IZF2 1346 aa11.26□□□□□ -0.61
CD44-208ENST00000428726 PLA2R1Q13018 1463 aa11.26□□□□□ -0.61
CD44-208ENST00000428726 KCNA4P22459 653 aa11.26□□□□□ -0.61
CD44-208ENST00000428726 ERICH6Q7L0X2 663 aa11.25□□□□□ -0.61
CD44-208ENST00000428726 BCL11AQ9H165 835 aa11.25□□□□□ -0.61
CD44-208ENST00000428726 ABCC1P33527 1531 aa11.25□□□□□ -0.61
CD44-208ENST00000428726 MAGI2Q86UL8 1455 aa11.24□□□□□ -0.61
CD44-208ENST00000428726 ARAP3Q8WWN8 1544 aa11.24□□□□□ -0.61
CD44-208ENST00000428726 NPM2Q86SE8 214 aaKnown RBP11.24□□□□□ -0.61
CD44-208ENST00000428726 TESK2Q96S53 571 aa11.24□□□□□ -0.61
CD44-208ENST00000428726 CCDC136Q96JN2 1154 aa11.23□□□□□ -0.61
CD44-208ENST00000428726 RRP7AQ9Y3A4 280 aaKnown RBP11.23□□□□□ -0.61
CD44-208ENST00000428726 PRAG1Q86YV5 1406 aa11.23□□□□□ -0.61
CD44-208ENST00000428726 ATP10AO60312 1499 aa11.23□□□□□ -0.61
CD44-208ENST00000428726 ADAMTS8Q9UP79 889 aa11.22□□□□□ -0.61
CD44-208ENST00000428726 UGGT1Q9NYU2 1555 aa11.22□□□□□ -0.61
CD44-208ENST00000428726 TMF1P82094 1093 aa11.22□□□□□ -0.61
CD44-208ENST00000428726 KNSTRNQ9Y448 316 aa11.22□□□□□ -0.61
CD44-208ENST00000428726 EXOC6Q8TAG9 804 aa11.22□□□□□ -0.61
CD44-208ENST00000428726 RTEL1-TNFRSF6BF6WH68 1400 aa11.22□□□□□ -0.61
CD44-208ENST00000428726 WASHC2CQ9Y4E1 1318 aa11.21□□□□□ -0.61
CD44-208ENST00000428726 TRPM1Q7Z4N2 1603 aa11.21□□□□□ -0.61
CD44-208ENST00000428726 FBLN1P23142 703 aa11.21□□□□□ -0.61
CD44-208ENST00000428726 ZBED9Q6R2W3 1325 aa11.21□□□□□ -0.62
CD44-208ENST00000428726 PLEKHG5O94827 1062 aa11.2□□□□□ -0.62
CD44-208ENST00000428726 NBR1Q14596 966 aa11.2□□□□□ -0.62
CD44-208ENST00000428726 A2MP01023 1474 aa11.2□□□□□ -0.62
CD44-208ENST00000428726 FBXO31Q5XUX0 539 aaPredicted RBP11.2□□□□□ -0.62
CD44-208ENST00000428726 SLC12A5Q9H2X9 1139 aa11.2□□□□□ -0.62
CD44-208ENST00000428726 WDR7Q9Y4E6 1490 aa11.19□□□□□ -0.62
CD44-208ENST00000428726 NUTM2FA1L443 756 aa11.19□□□□□ -0.62
CD44-208ENST00000428726 PER1O15534 1290 aaPredicted RBP11.19□□□□□ -0.62
CD44-208ENST00000428726 GPRASP1Q5JY77 1395 aa11.19□□□□□ -0.62
CD44-208ENST00000428726 LAMC1P11047 1609 aa11.18□□□□□ -0.62
CD44-208ENST00000428726 EIF2AK4Q9P2K8 1649 aaKnown RBP11.18□□□□□ -0.62
CD44-208ENST00000428726 MYBBP1AQ9BQG0 1328 aaKnown RBP11.18□□□□□ -0.62
CD44-208ENST00000428726 NUDCQ9Y266 331 aa11.18□□□□□ -0.62
CD44-208ENST00000428726 FANCAO15360 1455 aa11.17□□□□□ -0.62
CD44-208ENST00000428726 ASXL2Q76L83 1435 aa11.17□□□□□ -0.62
CD44-208ENST00000428726 KTN1Q86UP2 1357 aaKnown RBP11.17□□□□□ -0.62
CD44-208ENST00000428726 C20orf194Q5TEA3 1177 aa11.17□□□□□ -0.62
CD44-208ENST00000428726 ZFYVE16Q7Z3T8 1539 aa11.17□□□□□ -0.62
CD44-208ENST00000428726 PPP4R2Q9NY27 417 aa11.17□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms