RNA–Protein interactions for RNA: ENST00000428307.6

HDAC9-210, Transcript of histone deacetylase 9, humanhuman

TSL 2 BASIC

Gene HDAC9, Length 2,359 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-210ENST00000428307 PLA2R1Q13018 1463 aa14.54□□□□□ -0.08
HDAC9-210ENST00000428307 KIF3BO15066 747 aa14.54□□□□□ -0.08
HDAC9-210ENST00000428307 SPATA31E1Q6ZUB1 1445 aa14.53□□□□□ -0.08
HDAC9-210ENST00000428307 UNC13BO14795 1591 aa14.53□□□□□ -0.08
HDAC9-210ENST00000428307 CARD11Q9BXL7 1154 aa14.53□□□□□ -0.08
HDAC9-210ENST00000428307 ZFYVE16Q7Z3T8 1539 aa14.52□□□□□ -0.08
HDAC9-210ENST00000428307 USP47Q96K76 1375 aa14.51□□□□□ -0.09
HDAC9-210ENST00000428307 CCDC7Q96M83 1385 aa14.51□□□□□ -0.09
HDAC9-210ENST00000428307 POLR3GLQ9BT43 218 aa14.51□□□□□ -0.09
HDAC9-210ENST00000428307 KIF7Q2M1P5 1343 aa14.5□□□□□ -0.09
HDAC9-210ENST00000428307 UHRF1BP1Q6BDS2 1440 aa14.5□□□□□ -0.09
HDAC9-210ENST00000428307 ATP7AQ04656 1500 aa14.49□□□□□ -0.09
HDAC9-210ENST00000428307 MAGI2Q86UL8 1455 aa14.49□□□□□ -0.09
HDAC9-210ENST00000428307 IQGAP3Q86VI3 1631 aa14.49□□□□□ -0.09
HDAC9-210ENST00000428307 CCER2I3L3R5 266 aa14.48□□□□□ -0.09
HDAC9-210ENST00000428307 DHX29Q7Z478 1369 aaKnown RBP14.48□□□□□ -0.09
HDAC9-210ENST00000428307 RAPGEF3O95398 923 aa14.47□□□□□ -0.09
HDAC9-210ENST00000428307 ST20-MTHFSA0A0A6YYL1 179 aa14.46□□□□□ -0.1
HDAC9-210ENST00000428307 NBPF1Q3BBV0 1214 aa14.45□□□□□ -0.1
HDAC9-210ENST00000428307 ROCK2O75116 1388 aaKnown RBP14.45□□□□□ -0.1
HDAC9-210ENST00000428307 KANK1Q14678 1352 aa14.45□□□□□ -0.1
HDAC9-210ENST00000428307 ZNF518AQ6AHZ1 1483 aa14.45□□□□□ -0.1
HDAC9-210ENST00000428307 RALGAPBQ86X10 1494 aa14.45□□□□□ -0.1
HDAC9-210ENST00000428307 INO80Q9ULG1 1556 aaPredicted RBP14.44□□□□□ -0.1
HDAC9-210ENST00000428307 CNTLNQ9NXG0 1405 aa14.44□□□□□ -0.1
HDAC9-210ENST00000428307 ATP10AO60312 1499 aa14.43□□□□□ -0.1
HDAC9-210ENST00000428307 A2MP01023 1474 aa14.43□□□□□ -0.1
HDAC9-210ENST00000428307 CNGB1Q14028 1251 aaPredicted RBP14.42□□□□□ -0.1
HDAC9-210ENST00000428307 GGT6Q6P531 493 aa14.42□□□□□ -0.1
HDAC9-210ENST00000428307 PRAG1Q86YV5 1406 aa14.42□□□□□ -0.1
HDAC9-210ENST00000428307 POGZQ7Z3K3 1410 aa14.41□□□□□ -0.1
HDAC9-210ENST00000428307 FAM69CQ0P6D2 419 aa14.39□□□□□ -0.11
HDAC9-210ENST00000428307 PRKRIP1Q9H875 184 aaPredicted RBP14.39□□□□□ -0.11
HDAC9-210ENST00000428307 KDM5CP41229 1560 aa14.39□□□□□ -0.11
HDAC9-210ENST00000428307 KIDINS220Q9ULH0 1771 aa14.39□□□□□ -0.11
HDAC9-210ENST00000428307 E9PCH4 1651 aa14.38□□□□□ -0.11
HDAC9-210ENST00000428307 CCDC184Q52MB2 194 aa14.37□□□□□ -0.11
HDAC9-210ENST00000428307 PTPRTO14522 1441 aa14.37□□□□□ -0.11
HDAC9-210ENST00000428307 BCORL1Q5H9F3 1711 aa14.36□□□□□ -0.11
HDAC9-210ENST00000428307 MLH3Q9UHC1 1453 aa14.36□□□□□ -0.11
HDAC9-210ENST00000428307 DEPDC5O75140 1603 aa14.36□□□□□ -0.11
HDAC9-210ENST00000428307 RIMBP3CA6NJZ7 1639 aa14.36□□□□□ -0.11
HDAC9-210ENST00000428307 RIMBP3BA6NNM3 1639 aa14.36□□□□□ -0.11
HDAC9-210ENST00000428307 RIMBP3Q9UFD9 1639 aa14.36□□□□□ -0.11
HDAC9-210ENST00000428307 NEO1Q92859 1461 aa14.35□□□□□ -0.11
HDAC9-210ENST00000428307 ARID4BQ4LE39 1312 aaPredicted RBP14.35□□□□□ -0.11
HDAC9-210ENST00000428307 VWDEQ8N2E2 1590 aa14.34□□□□□ -0.11
HDAC9-210ENST00000428307 WASHC2CQ9Y4E1 1318 aa14.34□□□□□ -0.11
HDAC9-210ENST00000428307 CFAP74Q9C0B2 1584 aa14.34□□□□□ -0.11
HDAC9-210ENST00000428307 TRPM2O94759 1503 aa14.33□□□□□ -0.12
HDAC9-210ENST00000428307 PRDM15P57071 1507 aaPredicted RBP14.33□□□□□ -0.12
HDAC9-210ENST00000428307 MROH1Q8NDA8 1641 aa14.33□□□□□ -0.12
HDAC9-210ENST00000428307 TET3O43151 1660 aa14.32□□□□□ -0.12
HDAC9-210ENST00000428307 GPRASP1Q5JY77 1395 aa14.32□□□□□ -0.12
HDAC9-210ENST00000428307 CHGAP10645 457 aaKnown RBP14.32□□□□□ -0.12
HDAC9-210ENST00000428307 EIF2AK4Q9P2K8 1649 aaKnown RBP14.31□□□□□ -0.12
HDAC9-210ENST00000428307 MRS2Q9HD23 443 aa14.31□□□□□ -0.12
HDAC9-210ENST00000428307 TRPM1Q7Z4N2 1603 aa14.31□□□□□ -0.12
HDAC9-210ENST00000428307 FRMPD1Q5SYB0 1578 aa14.3□□□□□ -0.12
HDAC9-210ENST00000428307 UGGT1Q9NYU2 1555 aa14.3□□□□□ -0.12
HDAC9-210ENST00000428307 HECW2Q9P2P5 1572 aa14.3□□□□□ -0.12
HDAC9-210ENST00000428307 HNRNPUQ00839 825 aaKnown RBP eCLIP14.3□□□□□ -0.12
HDAC9-210ENST00000428307 FAM9BQ8IZU0 186 aa14.3□□□□□ -0.12
HDAC9-210ENST00000428307 CLTCL1P53675 1640 aa14.29□□□□□ -0.12
HDAC9-210ENST00000428307 TESK2Q96S53 571 aa14.29□□□□□ -0.12
HDAC9-210ENST00000428307 SPHKAPQ2M3C7 1700 aa14.28□□□□□ -0.12
HDAC9-210ENST00000428307 YEATS2Q9ULM3 1422 aa14.28□□□□□ -0.12
HDAC9-210ENST00000428307 STAC3Q96MF2 364 aa14.27□□□□□ -0.12
HDAC9-210ENST00000428307 EFCAB6Q5THR3 1501 aa14.27□□□□□ -0.12
HDAC9-210ENST00000428307 NPATQ14207 1427 aa14.27□□□□□ -0.12
HDAC9-210ENST00000428307 ABCA6Q8N139 1617 aa14.27□□□□□ -0.13
HDAC9-210ENST00000428307 MAP3K4Q9Y6R4 1608 aa14.26□□□□□ -0.13
HDAC9-210ENST00000428307 POLR1AO95602 1720 aaPredicted RBP14.26□□□□□ -0.13
HDAC9-210ENST00000428307 ADGRF5Q8IZF2 1346 aa14.26□□□□□ -0.13
HDAC9-210ENST00000428307 PPRC1Q5VV67 1664 aaKnown RBP14.25□□□□□ -0.13
HDAC9-210ENST00000428307 CFAP70Q5T0N1 1121 aa14.25□□□□□ -0.13
HDAC9-210ENST00000428307 DISP3Q9P2K9 1392 aa14.25□□□□□ -0.13
HDAC9-210ENST00000428307 LMTK2Q8IWU2 1503 aa14.25□□□□□ -0.13
HDAC9-210ENST00000428307 TMF1P82094 1093 aa14.24□□□□□ -0.13
HDAC9-210ENST00000428307 GLI2P10070 1586 aa14.24□□□□□ -0.13
HDAC9-210ENST00000428307 RNF17Q9BXT8 1623 aaKnown RBP14.23□□□□□ -0.13
HDAC9-210ENST00000428307 CEP152O94986 1710 aa14.22□□□□□ -0.13
HDAC9-210ENST00000428307 DIP2CQ9Y2E4 1556 aa14.22□□□□□ -0.13
HDAC9-210ENST00000428307 DIP2BQ9P265 1576 aa14.22□□□□□ -0.13
HDAC9-210ENST00000428307 MADDQ8WXG6 1647 aa14.21□□□□□ -0.13
HDAC9-210ENST00000428307 ABCC3O15438 1527 aa14.21□□□□□ -0.13
HDAC9-210ENST00000428307 CFAP65Q6ZU64 1925 aaKnown RBP14.2□□□□□ -0.14
HDAC9-210ENST00000428307 RICTORQ6R327 1708 aa14.2□□□□□ -0.14
HDAC9-210ENST00000428307 NUTM2DQ5VT03 806 aaPredicted RBP14.2□□□□□ -0.14
HDAC9-210ENST00000428307 PANK3Q9H999 370 aa14.19□□□□□ -0.14
HDAC9-210ENST00000428307 SUPT16HQ9Y5B9 1047 aaKnown RBP14.19□□□□□ -0.14
HDAC9-210ENST00000428307 PER1O15534 1290 aaPredicted RBP14.19□□□□□ -0.14
HDAC9-210ENST00000428307 COL17A1Q9UMD9 1497 aaPredicted RBP14.19□□□□□ -0.14
HDAC9-210ENST00000428307 NOS1P29475 1434 aa14.18□□□□□ -0.14
HDAC9-210ENST00000428307 TMC1Q8TDI8 760 aa14.18□□□□□ -0.14
HDAC9-210ENST00000428307 TSPOAP1O95153 1857 aa14.18□□□□□ -0.14
HDAC9-210ENST00000428307 LAMC1P11047 1609 aa14.18□□□□□ -0.14
HDAC9-210ENST00000428307 SCAF11Q99590 1463 aaKnown RBP14.18□□□□□ -0.14
HDAC9-210ENST00000428307 IDI1Q13907 227 aa14.17□□□□□ -0.14
HDAC9-210ENST00000428307 SENP3Q9H4L4 574 aaPredicted RBP14.17□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms