RNA–Protein interactions for RNA: ENST00000422491.6

USP54-204, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best) BASIC

Gene USP54, Length 2,777 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-204ENST00000422491 PKD2Q13563 968 aa14.07□□□□□ -0.16
USP54-204ENST00000422491 BLMP54132 1417 aaPredicted RBP14.07□□□□□ -0.16
USP54-204ENST00000422491 ADGRL2O95490 1459 aa14.06□□□□□ -0.16
USP54-204ENST00000422491 C8orf34Q49A92 452 aa14.05□□□□□ -0.16
USP54-204ENST00000422491 KIAA0586Q9BVV6 1533 aa14.04□□□□□ -0.16
USP54-204ENST00000422491 EIF5BO60841 1220 aaKnown RBP14.04□□□□□ -0.16
USP54-204ENST00000422491 FAM43AQ8N2R8 423 aa14.04□□□□□ -0.16
USP54-204ENST00000422491 CAMSAP2Q08AD1 1489 aa14.04□□□□□ -0.16
USP54-204ENST00000422491 FAM161AQ3B820 660 aa14.03□□□□□ -0.16
USP54-204ENST00000422491 DAXXQ9UER7 740 aaPredicted RBP14.03□□□□□ -0.16
USP54-204ENST00000422491 FRAT2O75474 233 aaPredicted RBP14.03□□□□□ -0.16
USP54-204ENST00000422491 C20orf194Q5TEA3 1177 aa14.03□□□□□ -0.16
USP54-204ENST00000422491 PLEKHH2Q8IVE3 1493 aa14.02□□□□□ -0.16
USP54-204ENST00000422491 CENPQQ7L2Z9 268 aaPredicted RBP14.02□□□□□ -0.16
USP54-204ENST00000422491 CROCC2H7BZ55 1655 aa14.02□□□□□ -0.16
USP54-204ENST00000422491 PER1O15534 1290 aaPredicted RBP14.02□□□□□ -0.17
USP54-204ENST00000422491 RSPH6AQ9H0K4 717 aa14.02□□□□□ -0.17
USP54-204ENST00000422491 DCAF11Q8TEB1 546 aa14.01□□□□□ -0.17
USP54-204ENST00000422491 ZNF608Q9ULD9 1512 aaPredicted RBP14.01□□□□□ -0.17
USP54-204ENST00000422491 NUP153P49790 1475 aaKnown RBP14□□□□□ -0.17
USP54-204ENST00000422491 CEP170Q5SW79 1584 aa13.99□□□□□ -0.17
USP54-204ENST00000422491 TARBP1Q13395 1621 aaKnown RBP13.98□□□□□ -0.17
USP54-204ENST00000422491 ANKRD50Q9ULJ7 1429 aa13.98□□□□□ -0.17
USP54-204ENST00000422491 ITSN2Q9NZM3 1697 aa13.98□□□□□ -0.17
USP54-204ENST00000422491 PBRM1Q86U86 1689 aa13.97□□□□□ -0.17
USP54-204ENST00000422491 ANKRD30AQ9BXX3 1397 aa13.97□□□□□ -0.17
USP54-204ENST00000422491 KDM5DQ9BY66 1539 aa13.96□□□□□ -0.17
USP54-204ENST00000422491 ADAMTS12P58397 1594 aa13.96□□□□□ -0.17
USP54-204ENST00000422491 KDM2AQ9Y2K7 1162 aa13.96□□□□□ -0.17
USP54-204ENST00000422491 GPATCH8Q9UKJ3 1502 aaKnown RBP13.96□□□□□ -0.18
USP54-204ENST00000422491 CFDP1Q9UEE9 299 aaPredicted RBP13.95□□□□□ -0.18
USP54-204ENST00000422491 TRPM1Q7Z4N2 1603 aa13.95□□□□□ -0.18
USP54-204ENST00000422491 RAPGEF6Q8TEU7 1601 aa13.95□□□□□ -0.18
USP54-204ENST00000422491 KIAA0556O60303 1618 aa13.94□□□□□ -0.18
USP54-204ENST00000422491 TROQ12816 1431 aaPredicted RBP13.94□□□□□ -0.18
USP54-204ENST00000422491 NUP155O75694 1391 aa13.94□□□□□ -0.18
USP54-204ENST00000422491 COL17A1Q9UMD9 1497 aaPredicted RBP13.94□□□□□ -0.18
USP54-204ENST00000422491 PRG4Q92954 1404 aaPredicted RBP13.93□□□□□ -0.18
USP54-204ENST00000422491 DISP1Q96F81 1524 aa13.93□□□□□ -0.18
USP54-204ENST00000422491 DUSP27Q5VZP5 1158 aa13.93□□□□□ -0.18
USP54-204ENST00000422491 CC2D1BQ5T0F9 858 aaKnown RBP13.92□□□□□ -0.18
USP54-204ENST00000422491 VIRMAQ69YN4 1812 aaKnown RBP13.92□□□□□ -0.18
USP54-204ENST00000422491 PRAG1Q86YV5 1406 aa13.92□□□□□ -0.18
USP54-204ENST00000422491 PTPRGP23470 1445 aa13.91□□□□□ -0.18
USP54-204ENST00000422491 PLEKHH1Q9ULM0 1364 aa13.91□□□□□ -0.18
USP54-204ENST00000422491 ADCY10Q96PN6 1610 aa13.91□□□□□ -0.18
USP54-204ENST00000422491 USP19O94966 1318 aa13.9□□□□□ -0.18
USP54-204ENST00000422491 ZNF521Q96K83 1311 aa13.9□□□□□ -0.18
USP54-204ENST00000422491 RGS3P49796 1198 aa13.9□□□□□ -0.18
USP54-204ENST00000422491 POGKQ9P215 609 aa13.9□□□□□ -0.18
USP54-204ENST00000422491 GPRASP1Q5JY77 1395 aa13.9□□□□□ -0.18
USP54-204ENST00000422491 DISP3Q9P2K9 1392 aa13.89□□□□□ -0.19
USP54-204ENST00000422491 ADAMTS8Q9UP79 889 aa13.89□□□□□ -0.19
USP54-204ENST00000422491 SHANK2Q9UPX8 1470 aa13.89□□□□□ -0.19
USP54-204ENST00000422491 RRAGDQ9NQL2 400 aaPredicted RBP13.88□□□□□ -0.19
USP54-204ENST00000422491 EIF4G3O43432 1585 aaKnown RBP13.88□□□□□ -0.19
USP54-204ENST00000422491 TESK2Q96S53 571 aa13.88□□□□□ -0.19
USP54-204ENST00000422491 ZNF777Q9ULD5 760 aaPredicted RBP13.88□□□□□ -0.19
USP54-204ENST00000422491 LAMC1P11047 1609 aa13.88□□□□□ -0.19
USP54-204ENST00000422491 PANK3Q9H999 370 aa13.88□□□□□ -0.19
USP54-204ENST00000422491 CDC42BPAQ5VT25 1732 aa13.87□□□□□ -0.19
USP54-204ENST00000422491 PRDM15P57071 1507 aaPredicted RBP13.87□□□□□ -0.19
USP54-204ENST00000422491 GOLGA6L2Q8N9W4 650 aaPredicted RBP13.87□□□□□ -0.19
USP54-204ENST00000422491 EIF3AQ14152 1382 aaKnown RBP13.86□□□□□ -0.19
USP54-204ENST00000422491 C9orf84Q5VXU9 1444 aa13.86□□□□□ -0.19
USP54-204ENST00000422491 NBPF1Q3BBV0 1214 aa13.86□□□□□ -0.19
USP54-204ENST00000422491 CLASP1Q7Z460 1538 aa13.86□□□□□ -0.19
USP54-204ENST00000422491 PDS5BQ9NTI5 1447 aa13.85□□□□□ -0.19
USP54-204ENST00000422491 GOLGA2Q08379 1002 aa13.84□□□□□ -0.19
USP54-204ENST00000422491 ERBINQ96RT1 1412 aa13.84□□□□□ -0.19
USP54-204ENST00000422491 NLRP1Q9C000 1473 aa13.84□□□□□ -0.19
USP54-204ENST00000422491 L1TD1Q5T7N2 865 aaKnown RBP13.83□□□□□ -0.19
USP54-204ENST00000422491 SLFN5Q08AF3 891 aa13.83□□□□□ -0.2
USP54-204ENST00000422491 TRMT2AQ8IZ69 625 aaKnown RBP13.83□□□□□ -0.2
USP54-204ENST00000422491 ABCC10Q5T3U5 1492 aa13.82□□□□□ -0.2
USP54-204ENST00000422491 ANTXR1Q9H6X2 564 aa13.82□□□□□ -0.2
USP54-204ENST00000422491 A2MP01023 1474 aa13.81□□□□□ -0.2
USP54-204ENST00000422491 SEC24BO95487 1268 aa13.81□□□□□ -0.2
USP54-204ENST00000422491 FAM135AQ9P2D6 1515 aa13.81□□□□□ -0.2
USP54-204ENST00000422491 IGHDP01880 384 aa13.81□□□□□ -0.2
USP54-204ENST00000422491 BECN1Q14457 450 aa13.8□□□□□ -0.2
USP54-204ENST00000422491 CCDC144AA2RUR9 1427 aa13.8□□□□□ -0.2
USP54-204ENST00000422491 PPP2R1AP30153 589 aa13.8□□□□□ -0.2
USP54-204ENST00000422491 WDR43Q15061 677 aaKnown RBP eCLIP13.8□□□□□ -0.2
USP54-204ENST00000422491 MAGI2Q86UL8 1455 aa13.79□□□□□ -0.2
USP54-204ENST00000422491 NKTRP30414 1462 aaKnown RBP13.79□□□□□ -0.2
USP54-204ENST00000422491 PLB1Q6P1J6 1458 aa13.79□□□□□ -0.2
USP54-204ENST00000422491 TMF1P82094 1093 aa13.79□□□□□ -0.2
USP54-204ENST00000422491 SLKQ9H2G2 1235 aaPredicted RBP13.79□□□□□ -0.2
USP54-204ENST00000422491 WDR7Q9Y4E6 1490 aa13.79□□□□□ -0.2
USP54-204ENST00000422491 MAPK8IP3Q9UPT6 1336 aa13.78□□□□□ -0.2
USP54-204ENST00000422491 EIF2AK4Q9P2K8 1649 aaKnown RBP13.77□□□□□ -0.2
USP54-204ENST00000422491 PLA2R1Q13018 1463 aa13.77□□□□□ -0.2
USP54-204ENST00000422491 SPINK5Q9NQ38 1064 aaPredicted RBP13.77□□□□□ -0.21
USP54-204ENST00000422491 FSD2A1L4K1 749 aa13.77□□□□□ -0.21
USP54-204ENST00000422491 BCAR3O75815 825 aa13.77□□□□□ -0.21
USP54-204ENST00000422491 XRCC6P12956 609 aaKnown RBP eCLIP13.76□□□□□ -0.21
USP54-204ENST00000422491 MYO5CQ9NQX4 1742 aa13.76□□□□□ -0.21
USP54-204ENST00000422491 RGL3Q3MIN7 710 aa13.76□□□□□ -0.21
USP54-204ENST00000422491 PKNOX2Q96KN3 472 aa13.76□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 9.8 ms