RNA–Protein interactions for RNA: ENST00000420720.5

RFX3-205, Transcript of regulatory factor X3, humanhuman

TSL 3

Gene RFX3, Length 492 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3-205ENST00000420720 SPDYE1Q8NFV5 336 aaPredicted RBP11.69□□□□□ -0.54
RFX3-205ENST00000420720 PKD2Q13563 968 aa11.68□□□□□ -0.54
RFX3-205ENST00000420720 UPF1Q92900 1129 aaKnown RBP eCLIP11.68□□□□□ -0.54
RFX3-205ENST00000420720 CLEC11AQ9Y240 323 aa11.68□□□□□ -0.54
RFX3-205ENST00000420720 ZNF142P52746 1687 aaPredicted RBP11.68□□□□□ -0.54
RFX3-205ENST00000420720 PTPRKQ15262 1439 aa11.68□□□□□ -0.54
RFX3-205ENST00000420720 EVX2Q03828 476 aa11.67□□□□□ -0.54
RFX3-205ENST00000420720 DIP2CQ9Y2E4 1556 aa11.67□□□□□ -0.54
RFX3-205ENST00000420720 SHANK2Q9UPX8 1470 aa11.66□□□□□ -0.54
RFX3-205ENST00000420720 HAX1O00165 279 aa11.66□□□□□ -0.54
RFX3-205ENST00000420720 AFAP1Q8N556 730 aa11.66□□□□□ -0.54
RFX3-205ENST00000420720 MYT1LQ9UL68 1186 aa11.66□□□□□ -0.54
RFX3-205ENST00000420720 MYO3AQ8NEV4 1616 aa11.66□□□□□ -0.54
RFX3-205ENST00000420720 NPATQ14207 1427 aa11.66□□□□□ -0.54
RFX3-205ENST00000420720 REREQ9P2R6 1566 aa11.66□□□□□ -0.54
RFX3-205ENST00000420720 TROQ12816 1431 aaPredicted RBP11.65□□□□□ -0.54
RFX3-205ENST00000420720 AGLP35573 1532 aa11.65□□□□□ -0.55
RFX3-205ENST00000420720 PRKAR2AP13861 404 aaKnown RBP11.64□□□□□ -0.55
RFX3-205ENST00000420720 CEP170BQ9Y4F5 1589 aaPredicted RBP11.63□□□□□ -0.55
RFX3-205ENST00000420720 CLIP1P30622 1438 aa11.63□□□□□ -0.55
RFX3-205ENST00000420720 SUPT6HQ7KZ85 1726 aaKnown RBP11.63□□□□□ -0.55
RFX3-205ENST00000420720 VWDEQ8N2E2 1590 aa11.62□□□□□ -0.55
RFX3-205ENST00000420720 NEURL4Q96JN8 1562 aa11.62□□□□□ -0.55
RFX3-205ENST00000420720 ABCA6Q8N139 1617 aa11.62□□□□□ -0.55
RFX3-205ENST00000420720 KDM5CP41229 1560 aa11.62□□□□□ -0.55
RFX3-205ENST00000420720 ARHGAP5Q13017 1502 aa11.61□□□□□ -0.55
RFX3-205ENST00000420720 KIF14Q15058 1648 aa11.61□□□□□ -0.55
RFX3-205ENST00000420720 CNTLNQ9NXG0 1405 aa11.6□□□□□ -0.55
RFX3-205ENST00000420720 MROH2AA6NES4 1674 aa11.6□□□□□ -0.55
RFX3-205ENST00000420720 ZNF518AQ6AHZ1 1483 aa11.59□□□□□ -0.55
RFX3-205ENST00000420720 ESF1Q9H501 851 aaKnown RBP11.58□□□□□ -0.56
RFX3-205ENST00000420720 CASKIN1Q8WXD9 1431 aa11.58□□□□□ -0.56
RFX3-205ENST00000420720 MYO5CQ9NQX4 1742 aa11.57□□□□□ -0.56
RFX3-205ENST00000420720 POLR1AO95602 1720 aaPredicted RBP11.57□□□□□ -0.56
RFX3-205ENST00000420720 RNF17Q9BXT8 1623 aaKnown RBP11.57□□□□□ -0.56
RFX3-205ENST00000420720 ZMYM3Q14202 1370 aa11.56□□□□□ -0.56
RFX3-205ENST00000420720 CHADLQ6NUI6 762 aa11.56□□□□□ -0.56
RFX3-205ENST00000420720 ZNF777Q9ULD5 760 aaPredicted RBP11.56□□□□□ -0.56
RFX3-205ENST00000420720 STRCP1A6NGW2 1772 aa11.56□□□□□ -0.56
RFX3-205ENST00000420720 CCDC18Q5T9S5 1454 aa11.55□□□□□ -0.56
RFX3-205ENST00000420720 LRRC7Q96NW7 1537 aa11.55□□□□□ -0.56
RFX3-205ENST00000420720 DNMT1P26358 1616 aaKnown RBP11.54□□□□□ -0.56
RFX3-205ENST00000420720 MLH3Q9UHC1 1453 aa11.54□□□□□ -0.56
RFX3-205ENST00000420720 LRRIQ1Q96JM4 1722 aa11.52□□□□□ -0.56
RFX3-205ENST00000420720 HNRNPMP52272 730 aaKnown RBP eCLIP11.52□□□□□ -0.57
RFX3-205ENST00000420720 ABCC1P33527 1531 aa11.51□□□□□ -0.57
RFX3-205ENST00000420720 C19orf67A6NJJ6 358 aa11.51□□□□□ -0.57
RFX3-205ENST00000420720 CLTCQ00610 1675 aaKnown RBP11.5□□□□□ -0.57
RFX3-205ENST00000420720 CDC42BPBQ9Y5S2 1711 aa11.5□□□□□ -0.57
RFX3-205ENST00000420720 A2ML1A8K2U0 1454 aa11.5□□□□□ -0.57
RFX3-205ENST00000420720 FYCO1Q9BQS8 1478 aa11.5□□□□□ -0.57
RFX3-205ENST00000420720 PREX2Q70Z35 1606 aa11.49□□□□□ -0.57
RFX3-205ENST00000420720 CFDP1Q9UEE9 299 aaPredicted RBP11.49□□□□□ -0.57
RFX3-205ENST00000420720 SPAG9O60271 1321 aaKnown RBP11.49□□□□□ -0.57
RFX3-205ENST00000420720 GPATCH8Q9UKJ3 1502 aaKnown RBP11.49□□□□□ -0.57
RFX3-205ENST00000420720 TRIM52Q96A61 297 aa11.48□□□□□ -0.57
RFX3-205ENST00000420720 SYNMO15061 1565 aa11.48□□□□□ -0.57
RFX3-205ENST00000420720 CCNB3Q8WWL7 1395 aa11.47□□□□□ -0.57
RFX3-205ENST00000420720 KIDINS220Q9ULH0 1771 aa11.46□□□□□ -0.57
RFX3-205ENST00000420720 SETBP1Q9Y6X0 1596 aa11.46□□□□□ -0.57
RFX3-205ENST00000420720 PRR29P0C7W0 189 aa11.46□□□□□ -0.57
RFX3-205ENST00000420720 ITSN2Q9NZM3 1697 aa11.46□□□□□ -0.58
RFX3-205ENST00000420720 SYCP2Q9BX26 1530 aa11.45□□□□□ -0.58
RFX3-205ENST00000420720 MTUS2Q5JR59 1369 aa11.45□□□□□ -0.58
RFX3-205ENST00000420720 SAMD9LQ8IVG5 1584 aa11.45□□□□□ -0.58
RFX3-205ENST00000420720 MED14O60244 1454 aa11.44□□□□□ -0.58
RFX3-205ENST00000420720 GGT6Q6P531 493 aa11.44□□□□□ -0.58
RFX3-205ENST00000420720 XIRP1Q702N8 1843 aaKnown RBP11.44□□□□□ -0.58
RFX3-205ENST00000420720 NPHP4O75161 1426 aaPredicted RBP11.43□□□□□ -0.58
RFX3-205ENST00000420720 FAM135BQ49AJ0 1406 aa11.43□□□□□ -0.58
RFX3-205ENST00000420720 ZNF644Q9H582 1327 aaPredicted RBP11.43□□□□□ -0.58
RFX3-205ENST00000420720 CDC42BPAQ5VT25 1732 aa11.43□□□□□ -0.58
RFX3-205ENST00000420720 KIAA1107Q9UPP5 1409 aa11.43□□□□□ -0.58
RFX3-205ENST00000420720 DEPDC5O75140 1603 aa11.42□□□□□ -0.58
RFX3-205ENST00000420720 IQGAP1P46940 1657 aa11.41□□□□□ -0.58
RFX3-205ENST00000420720 A2MP01023 1474 aa11.41□□□□□ -0.58
RFX3-205ENST00000420720 PLEKHH2Q8IVE3 1493 aa11.41□□□□□ -0.58
RFX3-205ENST00000420720 LRP6O75581 1613 aa11.41□□□□□ -0.58
RFX3-205ENST00000420720 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP11.41□□□□□ -0.58
RFX3-205ENST00000420720 ATP7AQ04656 1500 aa11.4□□□□□ -0.59
RFX3-205ENST00000420720 ROBO1Q9Y6N7 1651 aa11.4□□□□□ -0.59
RFX3-205ENST00000420720 ANKLE2Q86XL3 938 aa11.38□□□□□ -0.59
RFX3-205ENST00000420720 CDK12Q9NYV4 1490 aaPredicted RBP11.38□□□□□ -0.59
RFX3-205ENST00000420720 CEP162Q5TB80 1403 aa11.37□□□□□ -0.59
RFX3-205ENST00000420720 MBD5Q9P267 1494 aa11.37□□□□□ -0.59
RFX3-205ENST00000420720 PLXNC1O60486 1568 aa11.37□□□□□ -0.59
RFX3-205ENST00000420720 INO80Q9ULG1 1556 aaPredicted RBP11.36□□□□□ -0.59
RFX3-205ENST00000420720 ZC3H13Q5T200 1668 aaKnown RBP11.36□□□□□ -0.59
RFX3-205ENST00000420720 EHBP1L1Q8N3D4 1523 aa11.35□□□□□ -0.59
RFX3-205ENST00000420720 SPDYE4A6NLX3 237 aa11.35□□□□□ -0.59
RFX3-205ENST00000420720 DHX29Q7Z478 1369 aaKnown RBP11.35□□□□□ -0.59
RFX3-205ENST00000420720 TIAM1Q13009 1591 aa11.35□□□□□ -0.59
RFX3-205ENST00000420720 JCADQ9P266 1359 aa11.34□□□□□ -0.59
RFX3-205ENST00000420720 KIF3BO15066 747 aa11.34□□□□□ -0.59
RFX3-205ENST00000420720 RXRBP28702 533 aa11.34□□□□□ -0.59
RFX3-205ENST00000420720 IFFO2Q5TF58 517 aa11.34□□□□□ -0.59
RFX3-205ENST00000420720 ZNF772Q68DY9 489 aaPredicted RBP11.34□□□□□ -0.59
RFX3-205ENST00000420720 RTEL1-TNFRSF6BF6WH68 1400 aa11.34□□□□□ -0.59
RFX3-205ENST00000420720 TNRQ92752 1358 aa11.33□□□□□ -0.6
RFX3-205ENST00000420720 FBXO31Q5XUX0 539 aaPredicted RBP11.33□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms