RNA–Protein interactions for RNA: ENST00000419533.1

UBR4-206, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 5

Gene UBR4, Length 5,583 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-206ENST00000419533 FGD6Q6ZV73 1430 aa10.93□□□□□ -0.66
UBR4-206ENST00000419533 SAFB2Q14151 953 aaKnown RBP eCLIP10.93□□□□□ -0.66
UBR4-206ENST00000419533 STK26Q9P289 416 aa10.93□□□□□ -0.66
UBR4-206ENST00000419533 THEMISQ8N1K5 641 aaPredicted RBP10.93□□□□□ -0.66
UBR4-206ENST00000419533 PPP6R1Q9UPN7 881 aa10.93□□□□□ -0.66
UBR4-206ENST00000419533 SUPT6HQ7KZ85 1726 aaKnown RBP10.92□□□□□ -0.66
UBR4-206ENST00000419533 DDRGK1Q96HY6 314 aa10.92□□□□□ -0.66
UBR4-206ENST00000419533 DMRT2Q9Y5R5 561 aa10.91□□□□□ -0.66
UBR4-206ENST00000419533 SOX12O15370 315 aa10.91□□□□□ -0.66
UBR4-206ENST00000419533 ATP10BO94823 1461 aa10.91□□□□□ -0.66
UBR4-206ENST00000419533 OS9Q13438 667 aaPredicted RBP10.91□□□□□ -0.66
UBR4-206ENST00000419533 ZNF644Q9H582 1327 aaPredicted RBP10.9□□□□□ -0.66
UBR4-206ENST00000419533 VGFO15240 615 aaPredicted RBP10.9□□□□□ -0.66
UBR4-206ENST00000419533 RTF1Q92541 710 aaKnown RBP10.9□□□□□ -0.66
UBR4-206ENST00000419533 EIF3AQ14152 1382 aaKnown RBP10.89□□□□□ -0.67
UBR4-206ENST00000419533 MPHOSPH9Q99550 1183 aa10.89□□□□□ -0.67
UBR4-206ENST00000419533 GOLGA2Q08379 1002 aa10.89□□□□□ -0.67
UBR4-206ENST00000419533 PAK3O75914 559 aaPredicted RBP10.88□□□□□ -0.67
UBR4-206ENST00000419533 FRAT1Q92837 279 aaPredicted RBP10.88□□□□□ -0.67
UBR4-206ENST00000419533 GOLGA6L22H0YM25 854 aa10.88□□□□□ -0.67
UBR4-206ENST00000419533 UHRF1BP1LA0JNW5 1464 aa10.88□□□□□ -0.67
UBR4-206ENST00000419533 C9orf84Q5VXU9 1444 aa10.88□□□□□ -0.67
UBR4-206ENST00000419533 GLIPR1L2Q4G1C9 344 aa10.88□□□□□ -0.67
UBR4-206ENST00000419533 PCF11O94913 1555 aaKnown RBP10.88□□□□□ -0.67
UBR4-206ENST00000419533 PLCH2O75038 1416 aa10.88□□□□□ -0.67
UBR4-206ENST00000419533 CCDC141Q6ZP82 1450 aa10.87□□□□□ -0.67
UBR4-206ENST00000419533 CSB-PGBD3P0DP91 1061 aa10.87□□□□□ -0.67
UBR4-206ENST00000419533 NBR1Q14596 966 aa10.87□□□□□ -0.67
UBR4-206ENST00000419533 ROCK2O75116 1388 aaKnown RBP10.86□□□□□ -0.67
UBR4-206ENST00000419533 TIAM1Q13009 1591 aa10.86□□□□□ -0.67
UBR4-206ENST00000419533 ANKLE2Q86XL3 938 aa10.86□□□□□ -0.67
UBR4-206ENST00000419533 DISP1Q96F81 1524 aa10.86□□□□□ -0.67
UBR4-206ENST00000419533 ANKRD50Q9ULJ7 1429 aa10.86□□□□□ -0.67
UBR4-206ENST00000419533 SENP3-EIF4A1A0A087X0R7 540 aa10.86□□□□□ -0.67
UBR4-206ENST00000419533 ZRSR1Q15695 479 aaKnown RBP10.85□□□□□ -0.67
UBR4-206ENST00000419533 CCDC144AA2RUR9 1427 aa10.85□□□□□ -0.67
UBR4-206ENST00000419533 KTN1Q86UP2 1357 aaKnown RBP10.85□□□□□ -0.67
UBR4-206ENST00000419533 NUP153P49790 1475 aaKnown RBP10.84□□□□□ -0.67
UBR4-206ENST00000419533 CALD1Q05682 793 aaKnown RBP10.84□□□□□ -0.67
UBR4-206ENST00000419533 ZNF518AQ6AHZ1 1483 aa10.84□□□□□ -0.67
UBR4-206ENST00000419533 HSPA5P11021 654 aaKnown RBP10.83□□□□□ -0.68
UBR4-206ENST00000419533 CHMP4AQ9BY43 222 aa10.83□□□□□ -0.68
UBR4-206ENST00000419533 SLC52A1Q9NWF4 448 aa10.83□□□□□ -0.68
UBR4-206ENST00000419533 FOXD1Q16676 465 aa10.82□□□□□ -0.68
UBR4-206ENST00000419533 TERF2IPQ9NYB0 399 aa10.82□□□□□ -0.68
UBR4-206ENST00000419533 TXNDC2Q86VQ3 553 aa10.82□□□□□ -0.68
UBR4-206ENST00000419533 SUPT16HQ9Y5B9 1047 aaKnown RBP10.82□□□□□ -0.68
UBR4-206ENST00000419533 MAP3K1Q13233 1512 aa10.81□□□□□ -0.68
UBR4-206ENST00000419533 STAC3Q96MF2 364 aa10.81□□□□□ -0.68
UBR4-206ENST00000419533 FGD1P98174 961 aa10.81□□□□□ -0.68
UBR4-206ENST00000419533 RIMBP3CA6NJZ7 1639 aa10.8□□□□□ -0.68
UBR4-206ENST00000419533 RIMBP3BA6NNM3 1639 aa10.8□□□□□ -0.68
UBR4-206ENST00000419533 RIMBP3Q9UFD9 1639 aa10.8□□□□□ -0.68
UBR4-206ENST00000419533 ATF3P18847 181 aa10.8□□□□□ -0.68
UBR4-206ENST00000419533 KCNJ4P48050 445 aa10.8□□□□□ -0.68
UBR4-206ENST00000419533 CCDC9Q9Y3X0 531 aaKnown RBP10.8□□□□□ -0.68
UBR4-206ENST00000419533 NEO1Q92859 1461 aa10.8□□□□□ -0.68
UBR4-206ENST00000419533 CFAP74Q9C0B2 1584 aa10.8□□□□□ -0.68
UBR4-206ENST00000419533 RAB3GAP2Q9H2M9 1393 aa10.8□□□□□ -0.68
UBR4-206ENST00000419533 CAMSAP2Q08AD1 1489 aa10.8□□□□□ -0.68
UBR4-206ENST00000419533 NUTM2DQ5VT03 806 aaPredicted RBP10.79□□□□□ -0.68
UBR4-206ENST00000419533 NGDNQ8NEJ9 315 aaKnown RBP10.79□□□□□ -0.68
UBR4-206ENST00000419533 ABCC10Q5T3U5 1492 aa10.79□□□□□ -0.68
UBR4-206ENST00000419533 CLASP1Q7Z460 1538 aa10.79□□□□□ -0.68
UBR4-206ENST00000419533 IPO8O15397 1037 aaKnown RBP10.79□□□□□ -0.68
UBR4-206ENST00000419533 RALBP1Q15311 655 aa10.78□□□□□ -0.68
UBR4-206ENST00000419533 U2AF1L5P0DN76 240 aaPredicted RBP10.78□□□□□ -0.68
UBR4-206ENST00000419533 U2AF1Q01081 240 aaKnown RBP eCLIP10.78□□□□□ -0.683e-8■■■■■ 28.3
UBR4-206ENST00000419533 PPP4R2Q9NY27 417 aa10.78□□□□□ -0.68
UBR4-206ENST00000419533 DAPK1P53355 1430 aa10.78□□□□□ -0.68
UBR4-206ENST00000419533 CFAP44Q96MT7 982 aa10.77□□□□□ -0.68
UBR4-206ENST00000419533 TMX4Q9H1E5 349 aaPredicted RBP10.77□□□□□ -0.68
UBR4-206ENST00000419533 ITSN2Q9NZM3 1697 aa10.77□□□□□ -0.68
UBR4-206ENST00000419533 CCER2I3L3R5 266 aa10.77□□□□□ -0.69
UBR4-206ENST00000419533 KIAA1107Q9UPP5 1409 aa10.77□□□□□ -0.69
UBR4-206ENST00000419533 KDM5BQ9UGL1 1544 aa10.77□□□□□ -0.69
UBR4-206ENST00000419533 RGS3P49796 1198 aa10.76□□□□□ -0.69
UBR4-206ENST00000419533 MEX3CQ5U5Q3 659 aaKnown RBP10.76□□□□□ -0.69
UBR4-206ENST00000419533 PROSER2Q86WR7 435 aaPredicted RBP10.76□□□□□ -0.69
UBR4-206ENST00000419533 CNTLNQ9NXG0 1405 aa10.76□□□□□ -0.69
UBR4-206ENST00000419533 DHX29Q7Z478 1369 aaKnown RBP10.76□□□□□ -0.69
UBR4-206ENST00000419533 MCCP23508 829 aa10.74□□□□□ -0.69
UBR4-206ENST00000419533 NAP1L2Q9ULW6 460 aaPredicted RBP10.74□□□□□ -0.69
UBR4-206ENST00000419533 GPATCH8Q9UKJ3 1502 aaKnown RBP10.74□□□□□ -0.69
UBR4-206ENST00000419533 ZNF330Q9Y3S2 320 aaPredicted RBP10.74□□□□□ -0.69
UBR4-206ENST00000419533 SAMD9Q5K651 1589 aa10.73□□□□□ -0.69
UBR4-206ENST00000419533 ATP10AO60312 1499 aa10.73□□□□□ -0.69
UBR4-206ENST00000419533 AMPHP49418 695 aa10.73□□□□□ -0.69
UBR4-206ENST00000419533 HDAC5Q9UQL6 1122 aa10.73□□□□□ -0.69
UBR4-206ENST00000419533 STK31Q9BXU1 1019 aa10.73□□□□□ -0.69
UBR4-206ENST00000419533 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP10.73□□□□□ -0.69
UBR4-206ENST00000419533 ABCA8O94911 1581 aa10.72□□□□□ -0.69
UBR4-206ENST00000419533 A2MP01023 1474 aa10.72□□□□□ -0.69
UBR4-206ENST00000419533 ROCK1Q13464 1354 aa10.72□□□□□ -0.69
UBR4-206ENST00000419533 TULP1O00294 542 aaPredicted RBP10.72□□□□□ -0.69
UBR4-206ENST00000419533 LMOD3Q0VAK6 560 aa10.72□□□□□ -0.69
UBR4-206ENST00000419533 TRIM44Q96DX7 344 aaPredicted RBP10.72□□□□□ -0.69
UBR4-206ENST00000419533 RRBP1Q9P2E9 1410 aaKnown RBP10.72□□□□□ -0.69
UBR4-206ENST00000419533 DHX57Q6P158 1386 aaKnown RBP10.72□□□□□ -0.69
UBR4-206ENST00000419533 HSP90AB1P08238 724 aaKnown RBP10.71□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 49.6 ms