RNA–Protein interactions for RNA: ENST00000418882.2

HMGB1P49-201, Transcript of high mobility group box 1 pseudogene 49, humanhuman

BASIC

Gene HMGB1P49, Length 569 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P49-201ENST00000418882 COL9A1P20849 921 aa11.06□□□□□ -0.64
HMGB1P49-201ENST00000418882 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11.06□□□□□ -0.64
HMGB1P49-201ENST00000418882 KRTAP3-3Q9BYR6 98 aa11.06□□□□□ -0.64
HMGB1P49-201ENST00000418882 KRTAP3-2Q9BYR7 98 aa11.06□□□□□ -0.64
HMGB1P49-201ENST00000418882 C6orf132Q5T0Z8 1188 aa11.05□□□□□ -0.64
HMGB1P49-201ENST00000418882 DMRTA1Q5VZB9 504 aa11.05□□□□□ -0.64
HMGB1P49-201ENST00000418882 KCNK17Q96T54 332 aa11.05□□□□□ -0.64
HMGB1P49-201ENST00000418882 CDAN1Q8IWY9 1227 aa11.04□□□□□ -0.64
HMGB1P49-201ENST00000418882 GPR37O15354 613 aa11.02□□□□□ -0.65
HMGB1P49-201ENST00000418882 LMOD2Q6P5Q4 547 aa11.02□□□□□ -0.65
HMGB1P49-201ENST00000418882 NPDC1Q9NQX5 325 aaPredicted RBP11.02□□□□□ -0.65
HMGB1P49-201ENST00000418882 ARHGAP33O14559 1287 aa11.01□□□□□ -0.65
HMGB1P49-201ENST00000418882 PTPREP23469 700 aa11.01□□□□□ -0.65
HMGB1P49-201ENST00000418882 SMYD5Q6GMV2 418 aa11.01□□□□□ -0.65
HMGB1P49-201ENST00000418882 NUTM2FA1L443 756 aa10.99□□□□□ -0.65
HMGB1P49-201ENST00000418882 PBX2P40425 430 aa10.98□□□□□ -0.65
HMGB1P49-201ENST00000418882 PPP1R3GB7ZBB8 358 aa10.97□□□□□ -0.65
HMGB1P49-201ENST00000418882 PTGDRQ13258 359 aa10.97□□□□□ -0.65
HMGB1P49-201ENST00000418882 LSM11P83369 360 aaKnown RBP eCLIP10.96□□□□□ -0.65
HMGB1P49-201ENST00000418882 PROX2Q3B8N5 592 aa10.96□□□□□ -0.65
HMGB1P49-201ENST00000418882 ZBED2Q9BTP6 218 aa10.96□□□□□ -0.65
HMGB1P49-201ENST00000418882 GPIHBP1Q8IV16 184 aa10.95□□□□□ -0.66
HMGB1P49-201ENST00000418882 FAM198AQ9UFP1 575 aa10.95□□□□□ -0.66
HMGB1P49-201ENST00000418882 FECHP22830 423 aa10.93□□□□□ -0.66
HMGB1P49-201ENST00000418882 TULP1O00294 542 aaPredicted RBP10.92□□□□□ -0.66
HMGB1P49-201ENST00000418882 C3orf80F5H4A9 247 aa10.91□□□□□ -0.66
HMGB1P49-201ENST00000418882 TSKSQ9UJT2 592 aa10.91□□□□□ -0.66
HMGB1P49-201ENST00000418882 ANKRD13DQ6ZTN6 518 aa10.9□□□□□ -0.66
HMGB1P49-201ENST00000418882 ZC3H15Q8WU90 426 aaKnown RBP10.9□□□□□ -0.66
HMGB1P49-201ENST00000418882 VPS9D1Q9Y2B5 631 aa10.9□□□□□ -0.66
HMGB1P49-201ENST00000418882 FCHSD2O94868 740 aa10.89□□□□□ -0.67
HMGB1P49-201ENST00000418882 PRSS12P56730 875 aa10.89□□□□□ -0.67
HMGB1P49-201ENST00000418882 PADI6Q6TGC4 694 aa10.89□□□□□ -0.67
HMGB1P49-201ENST00000418882 CDCA7LQ96GN5 454 aa10.89□□□□□ -0.67
HMGB1P49-201ENST00000418882 ADGRD1Q6QNK2 874 aa10.88□□□□□ -0.67
HMGB1P49-201ENST00000418882 TTC13Q8NBP0 860 aa10.88□□□□□ -0.67
HMGB1P49-201ENST00000418882 KCNH8Q96L42 1107 aa10.88□□□□□ -0.67
HMGB1P49-201ENST00000418882 SLC4A5Q9BY07 1137 aa10.88□□□□□ -0.67
HMGB1P49-201ENST00000418882 TRIM6-TRIM34B2RNG4 842 aa10.87□□□□□ -0.67
HMGB1P49-201ENST00000418882 CERKQ8TCT0 537 aa10.87□□□□□ -0.67
HMGB1P49-201ENST00000418882 HRO43593 1189 aa10.86□□□□□ -0.67
HMGB1P49-201ENST00000418882 TK2O00142 265 aa10.85□□□□□ -0.67
HMGB1P49-201ENST00000418882 GNPATO15228 680 aa10.85□□□□□ -0.67
HMGB1P49-201ENST00000418882 HIC1Q14526 733 aa10.85□□□□□ -0.67
HMGB1P49-201ENST00000418882 FAM161AQ3B820 660 aa10.85□□□□□ -0.67
HMGB1P49-201ENST00000418882 KIAA1468Q9P260 1216 aa10.84□□□□□ -0.67
HMGB1P49-201ENST00000418882 RBM27Q9P2N5 1060 aaKnown RBP10.84□□□□□ -0.67
HMGB1P49-201ENST00000418882 BHMG1C9JSJ3 638 aaPredicted RBP10.83□□□□□ -0.68
HMGB1P49-201ENST00000418882 PCDH10Q9P2E7 1040 aa10.83□□□□□ -0.68
HMGB1P49-201ENST00000418882 ZMYND10O75800 440 aa10.82□□□□□ -0.68
HMGB1P49-201ENST00000418882 SMAPO00193 183 aa10.81□□□□□ -0.68
HMGB1P49-201ENST00000418882 RABGEF1Q9UJ41 708 aa10.81□□□□□ -0.68
HMGB1P49-201ENST00000418882 SEPT9Q9UHD8 586 aaPredicted RBP10.8□□□□□ -0.68
HMGB1P49-201ENST00000418882 ONECUT3O60422 494 aaPredicted RBP10.79□□□□□ -0.68
HMGB1P49-201ENST00000418882 BARGINQ6ZT62 677 aa10.79□□□□□ -0.68
HMGB1P49-201ENST00000418882 ADGRG1Q9Y653 693 aa10.79□□□□□ -0.68
HMGB1P49-201ENST00000418882 NUDT18Q6ZVK8 323 aa10.78□□□□□ -0.68
HMGB1P49-201ENST00000418882 SPNS2Q8IVW8 549 aa10.78□□□□□ -0.68
HMGB1P49-201ENST00000418882 TATDN2Q93075 761 aa10.77□□□□□ -0.69
HMGB1P49-201ENST00000418882 MAP2K5Q13163 448 aa10.76□□□□□ -0.69
HMGB1P49-201ENST00000418882 TPRNQ4KMQ1 711 aa10.76□□□□□ -0.69
HMGB1P49-201ENST00000418882 PNMA3Q9UL41 463 aa10.76□□□□□ -0.69
HMGB1P49-201ENST00000418882 PRKCSHP14314 528 aaPredicted RBP10.75□□□□□ -0.69
HMGB1P49-201ENST00000418882 PACS2Q86VP3 889 aa10.75□□□□□ -0.69
HMGB1P49-201ENST00000418882 PHOX2BQ99453 314 aa10.75□□□□□ -0.69
HMGB1P49-201ENST00000418882 EYA1Q99502 592 aa10.75□□□□□ -0.69
HMGB1P49-201ENST00000418882 NBPF26B4DH59 902 aa10.73□□□□□ -0.69
HMGB1P49-201ENST00000418882 IRF6O14896 467 aa10.73□□□□□ -0.69
HMGB1P49-201ENST00000418882 NLRP7Q8WX94 980 aa10.73□□□□□ -0.69
HMGB1P49-201ENST00000418882 CCDC102AQ96A19 550 aa10.73□□□□□ -0.69
HMGB1P49-201ENST00000418882 METTL3Q86U44 580 aaKnown RBP10.72□□□□□ -0.69
HMGB1P49-201ENST00000418882 PXYLP1Q8TE99 480 aa10.72□□□□□ -0.69
HMGB1P49-201ENST00000418882 MINK1Q8N4C8 1332 aaPredicted RBP10.71□□□□□ -0.69
HMGB1P49-201ENST00000418882 MRPL50Q8N5N7 158 aaKnown RBP10.71□□□□□ -0.69
HMGB1P49-201ENST00000418882 NBPF3Q9H094 633 aa10.71□□□□□ -0.69
HMGB1P49-201ENST00000418882 SLC24A3Q9HC58 644 aa10.71□□□□□ -0.69
HMGB1P49-201ENST00000418882 FAM98CQ17RN3 349 aaKnown RBP10.69□□□□□ -0.7
HMGB1P49-201ENST00000418882 LAPTM4BQ86VI4 370 aa10.68□□□□□ -0.7
HMGB1P49-201ENST00000418882 ZFRQ96KR1 1074 aaKnown RBP10.68□□□□□ -0.7
HMGB1P49-201ENST00000418882 RCCD1A6NED2 376 aa10.67□□□□□ -0.7
HMGB1P49-201ENST00000418882 KRI1Q8N9T8 703 aaKnown RBP10.67□□□□□ -0.7
HMGB1P49-201ENST00000418882 RBM46Q8TBY0 533 aaKnown RBP10.67□□□□□ -0.7
HMGB1P49-201ENST00000418882 MYT1LQ9UL68 1186 aa10.67□□□□□ -0.7
HMGB1P49-201ENST00000418882 OATP04181 439 aa10.65□□□□□ -0.7
HMGB1P49-201ENST00000418882 MMRN1Q13201 1228 aa10.65□□□□□ -0.7
HMGB1P49-201ENST00000418882 SAMD7Q7Z3H4 446 aa10.64□□□□□ -0.71
HMGB1P49-201ENST00000418882 SWT1Q5T5J6 900 aaKnown RBP10.63□□□□□ -0.71
HMGB1P49-201ENST00000418882 KCTD12Q96CX2 325 aaKnown RBP10.63□□□□□ -0.71
HMGB1P49-201ENST00000418882 STAC3Q96MF2 364 aa10.63□□□□□ -0.71
HMGB1P49-201ENST00000418882 TMEM134Q9H6X4 195 aa10.63□□□□□ -0.71
HMGB1P49-201ENST00000418882 TRIM66O15016 1216 aa10.62□□□□□ -0.71
HMGB1P49-201ENST00000418882 DNAJB2P25686 324 aa10.62□□□□□ -0.71
HMGB1P49-201ENST00000418882 BCAMP50895 628 aa10.62□□□□□ -0.71
HMGB1P49-201ENST00000418882 WNT2BQ93097 391 aa10.62□□□□□ -0.71
HMGB1P49-201ENST00000418882 REPIN1Q9BWE0 567 aaKnown RBP10.62□□□□□ -0.71
HMGB1P49-201ENST00000418882 AK7Q96M32 723 aa10.61□□□□□ -0.71
HMGB1P49-201ENST00000418882 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP10.6□□□□□ -0.71
HMGB1P49-201ENST00000418882 GOLGA8CPA6NN73 597 aa10.6□□□□□ -0.71
HMGB1P49-201ENST00000418882 RNF166Q96A37 237 aaPredicted RBP10.6□□□□□ -0.71
HMGB1P49-201ENST00000418882 THSD4Q6ZMP0 1018 aa10.59□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms