RNA–Protein interactions for RNA: ENST00000416769.2

LINC00339-202, long intergenic non-protein coding RNA 339, humanhuman

TSL 1 (best) BASIC

Gene LINC00339, Length 1,077 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-202ENST00000416769 CCDC141Q6ZP82 1450 aa20.75■□□□□ 0.91
LINC00339-202ENST00000416769 UBAP1LF5GYI3 381 aa20.75■□□□□ 0.91
LINC00339-202ENST00000416769 PKD2Q13563 968 aa20.75■□□□□ 0.91
LINC00339-202ENST00000416769 PPP6R1Q9UPN7 881 aa20.74■□□□□ 0.91
LINC00339-202ENST00000416769 TNRQ92752 1358 aa20.72■□□□□ 0.91
LINC00339-202ENST00000416769 SOCS7O14512 581 aa20.72■□□□□ 0.91
LINC00339-202ENST00000416769 KDM5DQ9BY66 1539 aa20.72■□□□□ 0.91
LINC00339-202ENST00000416769 POLR1AO95602 1720 aaPredicted RBP20.7■□□□□ 0.9
LINC00339-202ENST00000416769 PZPP20742 1482 aa20.7■□□□□ 0.9
LINC00339-202ENST00000416769 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP20.67■□□□□ 0.9
LINC00339-202ENST00000416769 ARHGEF5Q12774 1597 aa20.65■□□□□ 0.9
LINC00339-202ENST00000416769 WASHC2CQ9Y4E1 1318 aa20.65■□□□□ 0.9
LINC00339-202ENST00000416769 LOC105371045A0A1W2PR82 267 aa20.63■□□□□ 0.89
LINC00339-202ENST00000416769 VWDEQ8N2E2 1590 aa20.63■□□□□ 0.89
LINC00339-202ENST00000416769 KANK4Q5T7N3 995 aaPredicted RBP20.62■□□□□ 0.89
LINC00339-202ENST00000416769 LRRC9Q6ZRR7 1453 aa20.62■□□□□ 0.89
LINC00339-202ENST00000416769 SHANK2Q9UPX8 1470 aa20.62■□□□□ 0.89
LINC00339-202ENST00000416769 MIA2Q96PC5 1412 aa20.61■□□□□ 0.89
LINC00339-202ENST00000416769 SCAF1Q9H7N4 1312 aaKnown RBP20.61■□□□□ 0.89
LINC00339-202ENST00000416769 PIP4K2BP78356 416 aa20.61■□□□□ 0.89
LINC00339-202ENST00000416769 ALKQ9UM73 1620 aa20.6■□□□□ 0.89
LINC00339-202ENST00000416769 ABCC3O15438 1527 aa20.6■□□□□ 0.89
LINC00339-202ENST00000416769 HSPA1LP34931 641 aa20.6■□□□□ 0.89
LINC00339-202ENST00000416769 MROH1Q8NDA8 1641 aa20.6■□□□□ 0.89
LINC00339-202ENST00000416769 RNF17Q9BXT8 1623 aaKnown RBP20.6■□□□□ 0.89
LINC00339-202ENST00000416769 UGGT1Q9NYU2 1555 aa20.59■□□□□ 0.89
LINC00339-202ENST00000416769 FAM135AQ9P2D6 1515 aa20.59■□□□□ 0.89
LINC00339-202ENST00000416769 STRCP1A6NGW2 1772 aa20.58■□□□□ 0.89
LINC00339-202ENST00000416769 VPS8Q8N3P4 1428 aa20.58■□□□□ 0.88
LINC00339-202ENST00000416769 CFAP65Q6ZU64 1925 aaKnown RBP20.58■□□□□ 0.88
LINC00339-202ENST00000416769 NPHP4O75161 1426 aaPredicted RBP20.57■□□□□ 0.88
LINC00339-202ENST00000416769 CPS1P31327 1500 aa20.57■□□□□ 0.88
LINC00339-202ENST00000416769 NLRP1Q9C000 1473 aa20.56■□□□□ 0.88
LINC00339-202ENST00000416769 CEP152O94986 1710 aa20.56■□□□□ 0.88
LINC00339-202ENST00000416769 MAST1Q9Y2H9 1570 aa20.56■□□□□ 0.88
LINC00339-202ENST00000416769 RSPH4AQ5TD94 716 aa20.56■□□□□ 0.88
LINC00339-202ENST00000416769 TSPY4P0CV99 314 aa20.55■□□□□ 0.88
LINC00339-202ENST00000416769 TSPY10P0CW01 314 aa20.55■□□□□ 0.88
LINC00339-202ENST00000416769 ANKLE2Q86XL3 938 aa20.55■□□□□ 0.88
LINC00339-202ENST00000416769 ERVK-7P63135 1459 aa20.54■□□□□ 0.88
LINC00339-202ENST00000416769 MED1Q15648 1581 aaPredicted RBP20.54■□□□□ 0.88
LINC00339-202ENST00000416769 IQGAP1P46940 1657 aa20.54■□□□□ 0.88
LINC00339-202ENST00000416769 DEPDC5O75140 1603 aa20.53■□□□□ 0.88
LINC00339-202ENST00000416769 SENP3Q9H4L4 574 aaPredicted RBP20.53■□□□□ 0.88
LINC00339-202ENST00000416769 MED14O60244 1454 aa20.53■□□□□ 0.88
LINC00339-202ENST00000416769 THEMISQ8N1K5 641 aaPredicted RBP20.52■□□□□ 0.88
LINC00339-202ENST00000416769 ZC3H13Q5T200 1668 aaKnown RBP20.51■□□□□ 0.87
LINC00339-202ENST00000416769 MYOM3Q5VTT5 1437 aa20.5■□□□□ 0.87
LINC00339-202ENST00000416769 EIF2AK4Q9P2K8 1649 aaKnown RBP20.49■□□□□ 0.87
LINC00339-202ENST00000416769 UBR1Q8IWV7 1749 aa20.47■□□□□ 0.87
LINC00339-202ENST00000416769 TOM1O60784 492 aa20.47■□□□□ 0.87
LINC00339-202ENST00000416769 LRRC7Q96NW7 1537 aa20.47■□□□□ 0.87
LINC00339-202ENST00000416769 DUOX2Q9NRD8 1548 aa20.43■□□□□ 0.86
LINC00339-202ENST00000416769 CROCC2H7BZ55 1655 aa20.43■□□□□ 0.86
LINC00339-202ENST00000416769 LTKP29376 864 aa20.43■□□□□ 0.86
LINC00339-202ENST00000416769 ABCC5O15440 1437 aa20.43■□□□□ 0.86
LINC00339-202ENST00000416769 KIF15Q9NS87 1388 aa20.42■□□□□ 0.86
LINC00339-202ENST00000416769 MAP3K1Q13233 1512 aa20.42■□□□□ 0.86
LINC00339-202ENST00000416769 RRP7BPQ9NSQ0 103 aa20.41■□□□□ 0.86
LINC00339-202ENST00000416769 PRDM15P57071 1507 aaPredicted RBP20.41■□□□□ 0.86
LINC00339-202ENST00000416769 SCAF11Q99590 1463 aaKnown RBP20.4■□□□□ 0.86
LINC00339-202ENST00000416769 PTPN23Q9H3S7 1636 aa20.39■□□□□ 0.86
LINC00339-202ENST00000416769 GRWD1Q9BQ67 446 aaKnown RBP eCLIP20.39■□□□□ 0.852e-8■■■□□ 14.6
LINC00339-202ENST00000416769 XIRP1Q702N8 1843 aaKnown RBP20.39■□□□□ 0.85
LINC00339-202ENST00000416769 SYNMO15061 1565 aa20.38■□□□□ 0.85
LINC00339-202ENST00000416769 ARHGAP23Q9P227 1491 aa20.38■□□□□ 0.85
LINC00339-202ENST00000416769 PIK3C2BO00750 1634 aa20.38■□□□□ 0.85
LINC00339-202ENST00000416769 SLIT1O75093 1534 aa20.36■□□□□ 0.85
LINC00339-202ENST00000416769 DAPK1P53355 1430 aa20.36■□□□□ 0.85
LINC00339-202ENST00000416769 TXNDC2Q86VQ3 553 aa20.35■□□□□ 0.85
LINC00339-202ENST00000416769 ERBINQ96RT1 1412 aa20.35■□□□□ 0.85
LINC00339-202ENST00000416769 CHIC2Q9UKJ5 165 aa20.34■□□□□ 0.85
LINC00339-202ENST00000416769 ARHGAP31Q2M1Z3 1444 aa20.34■□□□□ 0.85
LINC00339-202ENST00000416769 FGD6Q6ZV73 1430 aa20.3■□□□□ 0.84
LINC00339-202ENST00000416769 RBM33Q96EV2 1170 aaKnown RBP20.3■□□□□ 0.84
LINC00339-202ENST00000416769 PHF23Q9BUL5 403 aaPredicted RBP20.29■□□□□ 0.84
LINC00339-202ENST00000416769 TMEM2Q9UHN6 1383 aa20.29■□□□□ 0.84
LINC00339-202ENST00000416769 IDI1Q13907 227 aa20.27■□□□□ 0.84
LINC00339-202ENST00000416769 EFCAB6Q5THR3 1501 aa20.26■□□□□ 0.83
LINC00339-202ENST00000416769 RGS17Q9UGC6 210 aaPredicted RBP20.25■□□□□ 0.83
LINC00339-202ENST00000416769 LMTK2Q8IWU2 1503 aa20.24■□□□□ 0.83
LINC00339-202ENST00000416769 SLC26A8Q96RN1 970 aa20.24■□□□□ 0.83
LINC00339-202ENST00000416769 EID1Q9Y6B2 187 aa20.23■□□□□ 0.83
LINC00339-202ENST00000416769 TMEM94Q12767 1356 aa20.22■□□□□ 0.83
LINC00339-202ENST00000416769 STAG3Q9UJ98 1225 aa20.22■□□□□ 0.83
LINC00339-202ENST00000416769 TET3O43151 1660 aa20.22■□□□□ 0.83
LINC00339-202ENST00000416769 KANK1Q14678 1352 aa20.21■□□□□ 0.83
LINC00339-202ENST00000416769 ANKRD30AQ9BXX3 1397 aa20.21■□□□□ 0.83
LINC00339-202ENST00000416769 NOS1P29475 1434 aa20.21■□□□□ 0.83
LINC00339-202ENST00000416769 ADGRB3O60242 1522 aa20.2■□□□□ 0.82
LINC00339-202ENST00000416769 MYO5BQ9ULV0 1848 aa20.2■□□□□ 0.82
LINC00339-202ENST00000416769 APLP2Q06481 763 aa20.18■□□□□ 0.82
LINC00339-202ENST00000416769 KDM5AP29375 1690 aaKnown RBP20.18■□□□□ 0.82
LINC00339-202ENST00000416769 ROBO1Q9Y6N7 1651 aa20.16■□□□□ 0.82
LINC00339-202ENST00000416769 KCNA6P17658 529 aa20.16■□□□□ 0.82
LINC00339-202ENST00000416769 ADGRL2O95490 1459 aa20.16■□□□□ 0.82
LINC00339-202ENST00000416769 NWD1Q149M9 1564 aa20.14■□□□□ 0.81
LINC00339-202ENST00000416769 FAM135BQ49AJ0 1406 aa20.14■□□□□ 0.81
LINC00339-202ENST00000416769 FAM50AQ14320 339 aaKnown RBP20.14■□□□□ 0.81
LINC00339-202ENST00000416769 PROSER2Q86WR7 435 aaPredicted RBP20.14■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 72.9 ms