RNA–Protein interactions for RNA: ENST00000413141.5

VPS41-204, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 575 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-204ENST00000413141 PZPP20742 1482 aa9.82□□□□□ -0.84
VPS41-204ENST00000413141 DIP2CQ9Y2E4 1556 aa9.81□□□□□ -0.84
VPS41-204ENST00000413141 DEPDC5O75140 1603 aa9.81□□□□□ -0.84
VPS41-204ENST00000413141 IQGAP3Q86VI3 1631 aa9.8□□□□□ -0.84
VPS41-204ENST00000413141 BCORL1Q5H9F3 1711 aa9.79□□□□□ -0.84
VPS41-204ENST00000413141 A2MP01023 1474 aa9.79□□□□□ -0.84
VPS41-204ENST00000413141 PRDM15P57071 1507 aaPredicted RBP9.78□□□□□ -0.84
VPS41-204ENST00000413141 FAM135AQ9P2D6 1515 aa9.78□□□□□ -0.84
VPS41-204ENST00000413141 TRIM52Q96A61 297 aa9.78□□□□□ -0.84
VPS41-204ENST00000413141 MROH1Q8NDA8 1641 aa9.78□□□□□ -0.84
VPS41-204ENST00000413141 RNF17Q9BXT8 1623 aaKnown RBP9.78□□□□□ -0.84
VPS41-204ENST00000413141 RAPGEF3O95398 923 aa9.77□□□□□ -0.85
VPS41-204ENST00000413141 ARHGEF40Q8TER5 1519 aa9.77□□□□□ -0.85
VPS41-204ENST00000413141 DHX29Q7Z478 1369 aaKnown RBP9.76□□□□□ -0.85
VPS41-204ENST00000413141 YEATS2Q9ULM3 1422 aa9.76□□□□□ -0.85
VPS41-204ENST00000413141 MPHOSPH9Q99550 1183 aa9.76□□□□□ -0.85
VPS41-204ENST00000413141 COL17A1Q9UMD9 1497 aaPredicted RBP9.76□□□□□ -0.85
VPS41-204ENST00000413141 NUP155O75694 1391 aa9.75□□□□□ -0.85
VPS41-204ENST00000413141 VWDEQ8N2E2 1590 aa9.75□□□□□ -0.85
VPS41-204ENST00000413141 REREQ9P2R6 1566 aa9.75□□□□□ -0.85
VPS41-204ENST00000413141 MYT1LQ9UL68 1186 aa9.75□□□□□ -0.85
VPS41-204ENST00000413141 SLC4A1APQ9BWU0 796 aaKnown RBP9.73□□□□□ -0.85
VPS41-204ENST00000413141 TET3O43151 1660 aa9.73□□□□□ -0.85
VPS41-204ENST00000413141 ANKRD30BQ9BXX2 1392 aa9.72□□□□□ -0.85
VPS41-204ENST00000413141 LMTK2Q8IWU2 1503 aa9.72□□□□□ -0.85
VPS41-204ENST00000413141 ATP10AO60312 1499 aa9.71□□□□□ -0.86
VPS41-204ENST00000413141 EFCAB6Q5THR3 1501 aa9.71□□□□□ -0.86
VPS41-204ENST00000413141 E9PCH4 1651 aa9.71□□□□□ -0.86
VPS41-204ENST00000413141 ZC3H13Q5T200 1668 aaKnown RBP9.71□□□□□ -0.86
VPS41-204ENST00000413141 CEP152O94986 1710 aa9.7□□□□□ -0.86
VPS41-204ENST00000413141 SIGLEC1Q9BZZ2 1709 aa9.7□□□□□ -0.86
VPS41-204ENST00000413141 TRHP20396 242 aaPredicted RBP9.7□□□□□ -0.86
VPS41-204ENST00000413141 RPRD2Q5VT52 1461 aaKnown RBP9.7□□□□□ -0.86
VPS41-204ENST00000413141 AGLP35573 1532 aa9.7□□□□□ -0.86
VPS41-204ENST00000413141 KIF3BO15066 747 aa9.69□□□□□ -0.86
VPS41-204ENST00000413141 PKD2Q13563 968 aa9.69□□□□□ -0.86
VPS41-204ENST00000413141 KANK1Q14678 1352 aa9.69□□□□□ -0.86
VPS41-204ENST00000413141 SIN3AQ96ST3 1273 aa9.69□□□□□ -0.86
VPS41-204ENST00000413141 GRWD1Q9BQ67 446 aaKnown RBP eCLIP9.69□□□□□ -0.862e-6■□□□□ 8.7
VPS41-204ENST00000413141 ABCC3O15438 1527 aa9.68□□□□□ -0.86
VPS41-204ENST00000413141 SPHKAPQ2M3C7 1700 aa9.68□□□□□ -0.86
VPS41-204ENST00000413141 CAMSAP1Q5T5Y3 1602 aa9.67□□□□□ -0.86
VPS41-204ENST00000413141 TRPM2O94759 1503 aa9.66□□□□□ -0.86
VPS41-204ENST00000413141 TONSLQ96HA7 1378 aa9.66□□□□□ -0.86
VPS41-204ENST00000413141 NEUROD1Q13562 356 aa9.66□□□□□ -0.86
VPS41-204ENST00000413141 PLA2R1Q13018 1463 aa9.66□□□□□ -0.86
VPS41-204ENST00000413141 TIMELESSQ9UNS1 1208 aa9.65□□□□□ -0.86
VPS41-204ENST00000413141 CCDC144AA2RUR9 1427 aa9.64□□□□□ -0.87
VPS41-204ENST00000413141 PTPRTO14522 1441 aa9.64□□□□□ -0.87
VPS41-204ENST00000413141 CLTCL1P53675 1640 aa9.63□□□□□ -0.87
VPS41-204ENST00000413141 GGT6Q6P531 493 aa9.62□□□□□ -0.87
VPS41-204ENST00000413141 NPATQ14207 1427 aa9.62□□□□□ -0.87
VPS41-204ENST00000413141 ARHGAP31Q2M1Z3 1444 aa9.61□□□□□ -0.87
VPS41-204ENST00000413141 CLTCQ00610 1675 aaKnown RBP9.61□□□□□ -0.87
VPS41-204ENST00000413141 WASHC2CQ9Y4E1 1318 aa9.59□□□□□ -0.87
VPS41-204ENST00000413141 NEURL4Q96JN8 1562 aa9.59□□□□□ -0.87
VPS41-204ENST00000413141 UGGT1Q9NYU2 1555 aa9.59□□□□□ -0.87
VPS41-204ENST00000413141 CNTLNQ9NXG0 1405 aa9.59□□□□□ -0.87
VPS41-204ENST00000413141 PREX1Q8TCU6 1659 aa9.59□□□□□ -0.87
VPS41-204ENST00000413141 PIK3C2BO00750 1634 aa9.59□□□□□ -0.87
VPS41-204ENST00000413141 SYNMO15061 1565 aa9.58□□□□□ -0.88
VPS41-204ENST00000413141 MROH2AA6NES4 1674 aa9.58□□□□□ -0.88
VPS41-204ENST00000413141 NOS1P29475 1434 aa9.57□□□□□ -0.88
VPS41-204ENST00000413141 SPATA31E1Q6ZUB1 1445 aa9.57□□□□□ -0.88
VPS41-204ENST00000413141 ADGRB3O60242 1522 aa9.57□□□□□ -0.88
VPS41-204ENST00000413141 PPP1R15AO75807 674 aaPredicted RBP9.57□□□□□ -0.88
VPS41-204ENST00000413141 L3MBTL2Q969R5 705 aa9.57□□□□□ -0.88
VPS41-204ENST00000413141 SPATA31D1Q6ZQQ2 1576 aa9.55□□□□□ -0.88
VPS41-204ENST00000413141 ERVK-7P63135 1459 aa9.55□□□□□ -0.88
VPS41-204ENST00000413141 KIF1BO60333 1816 aa9.55□□□□□ -0.88
VPS41-204ENST00000413141 UHRF1BP1Q6BDS2 1440 aa9.55□□□□□ -0.88
VPS41-204ENST00000413141 FER1L4A9Z1Z3 1794 aa9.55□□□□□ -0.88
VPS41-204ENST00000413141 IFT172Q9UG01 1749 aa9.54□□□□□ -0.88
VPS41-204ENST00000413141 MLECQ14165 292 aa9.53□□□□□ -0.88
VPS41-204ENST00000413141 ARID4BQ4LE39 1312 aaPredicted RBP9.53□□□□□ -0.88
VPS41-204ENST00000413141 RALGAPBQ86X10 1494 aa9.53□□□□□ -0.88
VPS41-204ENST00000413141 MADDQ8WXG6 1647 aa9.53□□□□□ -0.88
VPS41-204ENST00000413141 PRAG1Q86YV5 1406 aa9.52□□□□□ -0.89
VPS41-204ENST00000413141 TRPM1Q7Z4N2 1603 aa9.52□□□□□ -0.89
VPS41-204ENST00000413141 MYOM2P54296 1465 aa9.51□□□□□ -0.89
VPS41-204ENST00000413141 CFAP65Q6ZU64 1925 aaKnown RBP9.5□□□□□ -0.89
VPS41-204ENST00000413141 PPLO60437 1756 aa9.5□□□□□ -0.89
VPS41-204ENST00000413141 TMEM131LA2VDJ0 1609 aa9.5□□□□□ -0.89
VPS41-204ENST00000413141 NBPF8Q3BBV2 869 aa9.5□□□□□ -0.89
VPS41-204ENST00000413141 C3P01024 1663 aa9.5□□□□□ -0.89
VPS41-204ENST00000413141 ZMYM3Q14202 1370 aa9.5□□□□□ -0.89
VPS41-204ENST00000413141 ZNF316A6NFI3 1004 aaPredicted RBP9.49□□□□□ -0.89
VPS41-204ENST00000413141 DCAF11Q8TEB1 546 aa9.49□□□□□ -0.89
VPS41-204ENST00000413141 ESF1Q9H501 851 aaKnown RBP9.49□□□□□ -0.89
VPS41-204ENST00000413141 LAMC1P11047 1609 aa9.49□□□□□ -0.89
VPS41-204ENST00000413141 ADAMTSL3P82987 1691 aa9.48□□□□□ -0.89
VPS41-204ENST00000413141 NEXMIFQ5QGS0 1516 aa9.48□□□□□ -0.89
VPS41-204ENST00000413141 RGL3Q3MIN7 710 aa9.48□□□□□ -0.89
VPS41-204ENST00000413141 RIMS1Q86UR5 1692 aaKnown RBP9.48□□□□□ -0.89
VPS41-204ENST00000413141 NRXN1Q9ULB1 1477 aa9.47□□□□□ -0.89
VPS41-204ENST00000413141 MYO5BQ9ULV0 1848 aa9.47□□□□□ -0.89
VPS41-204ENST00000413141 ZNF326Q5BKZ1 582 aaKnown RBP9.47□□□□□ -0.89
VPS41-204ENST00000413141 FBXO31Q5XUX0 539 aaPredicted RBP9.47□□□□□ -0.89
VPS41-204ENST00000413141 SLC52A1Q9NWF4 448 aa9.47□□□□□ -0.89
VPS41-204ENST00000413141 KDM5AP29375 1690 aaKnown RBP9.47□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms