RNA–Protein interactions for RNA: ENST00000409945.1

USP40-202, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-202ENST00000409945 FAM161AQ3B820 660 aa12.1□□□□□ -0.47
USP40-202ENST00000409945 GPR153Q6NV75 609 aa12.09□□□□□ -0.47
USP40-202ENST00000409945 IL27Q8NEV9 243 aa12.09□□□□□ -0.47
USP40-202ENST00000409945 MINK1Q8N4C8 1332 aaPredicted RBP12.09□□□□□ -0.47
USP40-202ENST00000409945 PHOX2BQ99453 314 aa12.08□□□□□ -0.48
USP40-202ENST00000409945 FOSBP53539 338 aa12.07□□□□□ -0.48
USP40-202ENST00000409945 PARP9Q8IXQ6 854 aa12.07□□□□□ -0.48
USP40-202ENST00000409945 REPIN1Q9BWE0 567 aaKnown RBP12.07□□□□□ -0.48
USP40-202ENST00000409945 FAM117AQ9C073 453 aa12.07□□□□□ -0.48
USP40-202ENST00000409945 UNC13AQ9UPW8 1703 aa12.06□□□□□ -0.48
USP40-202ENST00000409945 ZNF316A6NFI3 1004 aaPredicted RBP12.05□□□□□ -0.48
USP40-202ENST00000409945 JPH4Q96JJ6 628 aa12.05□□□□□ -0.48
USP40-202ENST00000409945 NLRP7Q8WX94 980 aa12.05□□□□□ -0.48
USP40-202ENST00000409945 ZNF454Q8N9F8 522 aa12.04□□□□□ -0.48
USP40-202ENST00000409945 ADAM33Q9BZ11 813 aa12.04□□□□□ -0.48
USP40-202ENST00000409945 EPAS1Q99814 870 aa12.03□□□□□ -0.48
USP40-202ENST00000409945 TYW1BQ6NUM6 668 aa12.03□□□□□ -0.48
USP40-202ENST00000409945 AMHR2Q16671 573 aa12.01□□□□□ -0.49
USP40-202ENST00000409945 PLEKHG3A1L390 1219 aa12.01□□□□□ -0.49
USP40-202ENST00000409945 LHX6Q9UPM6 363 aa12.01□□□□□ -0.49
USP40-202ENST00000409945 C6orf132Q5T0Z8 1188 aa11.99□□□□□ -0.49
USP40-202ENST00000409945 DOK7Q18PE1 504 aa11.99□□□□□ -0.49
USP40-202ENST00000409945 SCRIBQ14160 1630 aa11.98□□□□□ -0.49
USP40-202ENST00000409945 OTUD5Q96G74 571 aa11.98□□□□□ -0.49
USP40-202ENST00000409945 SCUBE2Q9NQ36 999 aa11.98□□□□□ -0.49
USP40-202ENST00000409945 PADI6Q6TGC4 694 aa11.97□□□□□ -0.49
USP40-202ENST00000409945 ZDHHC16Q969W1 377 aa11.97□□□□□ -0.49
USP40-202ENST00000409945 MS4A1P11836 297 aa11.96□□□□□ -0.49
USP40-202ENST00000409945 SHROOM4Q9ULL8 1493 aa11.96□□□□□ -0.49
USP40-202ENST00000409945 COL9A1P20849 921 aa11.96□□□□□ -0.5
USP40-202ENST00000409945 FBXW7Q969H0 707 aa11.96□□□□□ -0.5
USP40-202ENST00000409945 BICRAQ9NZM4 1560 aa11.95□□□□□ -0.5
USP40-202ENST00000409945 C3orf80F5H4A9 247 aa11.95□□□□□ -0.5
USP40-202ENST00000409945 TTLL12Q14166 644 aaPredicted RBP11.95□□□□□ -0.5
USP40-202ENST00000409945 FAM198AQ9UFP1 575 aa11.95□□□□□ -0.5
USP40-202ENST00000409945 GIGYF2Q6Y7W6 1299 aaKnown RBP11.94□□□□□ -0.5
USP40-202ENST00000409945 ZNF710Q8N1W2 664 aa11.93□□□□□ -0.5
USP40-202ENST00000409945 MDM2Q00987 491 aaPredicted RBP11.91□□□□□ -0.5
USP40-202ENST00000409945 ZSWIM6Q9HCJ5 1215 aa11.91□□□□□ -0.5
USP40-202ENST00000409945 METTL3Q86U44 580 aaKnown RBP11.9□□□□□ -0.5
USP40-202ENST00000409945 TMUB1Q9BVT8 246 aa11.9□□□□□ -0.5
USP40-202ENST00000409945 TTC13Q8NBP0 860 aa11.9□□□□□ -0.51
USP40-202ENST00000409945 ADGRG1Q9Y653 693 aa11.9□□□□□ -0.51
USP40-202ENST00000409945 RIMBP2O15034 1052 aa11.89□□□□□ -0.51
USP40-202ENST00000409945 MAMSTRQ6ZN01 415 aa11.88□□□□□ -0.51
USP40-202ENST00000409945 CDCA7LQ96GN5 454 aa11.87□□□□□ -0.51
USP40-202ENST00000409945 HOXB1P14653 301 aaPredicted RBP11.86□□□□□ -0.51
USP40-202ENST00000409945 PXYLP1Q8TE99 480 aa11.86□□□□□ -0.51
USP40-202ENST00000409945 TSKSQ9UJT2 592 aa11.85□□□□□ -0.51
USP40-202ENST00000409945 PRSS12P56730 875 aa11.84□□□□□ -0.51
USP40-202ENST00000409945 BCL2L12Q9HB09 334 aa11.84□□□□□ -0.51
USP40-202ENST00000409945 PROX2Q3B8N5 592 aa11.81□□□□□ -0.52
USP40-202ENST00000409945 PPP4R3BQ5MIZ7 849 aa11.81□□□□□ -0.52
USP40-202ENST00000409945 C14orf37Q86TY3 774 aa11.81□□□□□ -0.52
USP40-202ENST00000409945 GPCPD1Q9NPB8 672 aa11.81□□□□□ -0.52
USP40-202ENST00000409945 POTEEQ6S8J3 1075 aa11.8□□□□□ -0.52
USP40-202ENST00000409945 DDRGK1Q96HY6 314 aa11.8□□□□□ -0.52
USP40-202ENST00000409945 CERKQ8TCT0 537 aa11.79□□□□□ -0.52
USP40-202ENST00000409945 SSTR3P32745 418 aaPredicted RBP11.78□□□□□ -0.52
USP40-202ENST00000409945 FAM217BQ9NTX9 383 aaPredicted RBP11.78□□□□□ -0.52
USP40-202ENST00000409945 SMAPO00193 183 aa11.78□□□□□ -0.52
USP40-202ENST00000409945 CLCN1P35523 988 aa11.78□□□□□ -0.52
USP40-202ENST00000409945 RBM27Q9P2N5 1060 aaKnown RBP11.78□□□□□ -0.52
USP40-202ENST00000409945 KCNK17Q96T54 332 aa11.77□□□□□ -0.53
USP40-202ENST00000409945 PSEN2P49810 448 aa11.76□□□□□ -0.53
USP40-202ENST00000409945 EYA1Q99502 592 aa11.76□□□□□ -0.53
USP40-202ENST00000409945 LHX8Q68G74 356 aa11.76□□□□□ -0.53
USP40-202ENST00000409945 PPP1R3GB7ZBB8 358 aa11.75□□□□□ -0.53
USP40-202ENST00000409945 OATP04181 439 aa11.75□□□□□ -0.53
USP40-202ENST00000409945 BEGAINQ9BUH8 593 aa11.75□□□□□ -0.53
USP40-202ENST00000409945 PTPREP23469 700 aa11.74□□□□□ -0.53
USP40-202ENST00000409945 NUDT18Q6ZVK8 323 aa11.74□□□□□ -0.53
USP40-202ENST00000409945 MARVELD3Q96A59 401 aa11.74□□□□□ -0.53
USP40-202ENST00000409945 AXIN2Q9Y2T1 843 aa11.74□□□□□ -0.53
USP40-202ENST00000409945 RCCD1A6NED2 376 aa11.73□□□□□ -0.53
USP40-202ENST00000409945 SNPHO15079 494 aa11.72□□□□□ -0.53
USP40-202ENST00000409945 ST18O60284 1047 aa11.72□□□□□ -0.53
USP40-202ENST00000409945 FBXO31Q5XUX0 539 aaPredicted RBP11.72□□□□□ -0.53
USP40-202ENST00000409945 VARS2Q5ST30 1063 aaKnown RBP11.71□□□□□ -0.53
USP40-202ENST00000409945 EIF4G1Q04637 1599 aaKnown RBP11.7□□□□□ -0.54
USP40-202ENST00000409945 TRIM6-TRIM34B2RNG4 842 aa11.7□□□□□ -0.54
USP40-202ENST00000409945 PROCA1Q8NCQ7 364 aaPredicted RBP11.7□□□□□ -0.54
USP40-202ENST00000409945 PSDA5PKW4 1024 aaPredicted RBP11.69□□□□□ -0.54
USP40-202ENST00000409945 POTEB3A0JP26 581 aa11.68□□□□□ -0.54
USP40-202ENST00000409945 DMRTA1Q5VZB9 504 aa11.68□□□□□ -0.54
USP40-202ENST00000409945 POTEBQ6S5H4 581 aa11.68□□□□□ -0.54
USP40-202ENST00000409945 RBM46Q8TBY0 533 aaKnown RBP11.68□□□□□ -0.54
USP40-202ENST00000409945 TATDN2Q93075 761 aa11.68□□□□□ -0.54
USP40-202ENST00000409945 ZBED2Q9BTP6 218 aa11.68□□□□□ -0.54
USP40-202ENST00000409945 POLR3EQ9NVU0 708 aa11.68□□□□□ -0.54
USP40-202ENST00000409945 PNMA3Q9UL41 463 aa11.68□□□□□ -0.54
USP40-202ENST00000409945 CC2D2AQ9P2K1 1620 aa11.67□□□□□ -0.54
USP40-202ENST00000409945 SUPT5HO00267 1087 aaKnown RBP11.65□□□□□ -0.54
USP40-202ENST00000409945 MYSM1Q5VVJ2 828 aa11.65□□□□□ -0.54
USP40-202ENST00000409945 KIAA1468Q9P260 1216 aa11.65□□□□□ -0.54
USP40-202ENST00000409945 SH3D19Q5HYK7 790 aa11.64□□□□□ -0.55
USP40-202ENST00000409945 LCE2DQ5TA82 110 aaPredicted RBP11.64□□□□□ -0.55
USP40-202ENST00000409945 GOPCQ9HD26 462 aa11.64□□□□□ -0.55
USP40-202ENST00000409945 ERBB3P21860 1342 aa11.64□□□□□ -0.55
USP40-202ENST00000409945 ONECUT3O60422 494 aaPredicted RBP11.64□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms