RNA–Protein interactions for RNA: ENST00000403971.2

HMGB3P19-201, Transcript of high mobility group box 3 pseudogene 19, humanhuman

BASIC

Gene HMGB3P19, Length 560 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P19-201ENST00000403971 AK7Q96M32 723 aa10.83□□□□□ -0.68
HMGB3P19-201ENST00000403971 ADAM33Q9BZ11 813 aa10.82□□□□□ -0.68
HMGB3P19-201ENST00000403971 C6orf132Q5T0Z8 1188 aa10.8□□□□□ -0.68
HMGB3P19-201ENST00000403971 MAP2K5Q13163 448 aa10.79□□□□□ -0.68
HMGB3P19-201ENST00000403971 NEUROD2Q15784 382 aa10.79□□□□□ -0.68
HMGB3P19-201ENST00000403971 TRIM66O15016 1216 aa10.78□□□□□ -0.68
HMGB3P19-201ENST00000403971 CCDC102AQ96A19 550 aa10.78□□□□□ -0.68
HMGB3P19-201ENST00000403971 MINK1Q8N4C8 1332 aaPredicted RBP10.78□□□□□ -0.68
HMGB3P19-201ENST00000403971 IRF6O14896 467 aa10.77□□□□□ -0.69
HMGB3P19-201ENST00000403971 PPP4R3BQ5MIZ7 849 aa10.76□□□□□ -0.69
HMGB3P19-201ENST00000403971 GPBP1L1Q9HC44 474 aaPredicted RBP10.74□□□□□ -0.69
HMGB3P19-201ENST00000403971 PDE4DQ08499 809 aa10.73□□□□□ -0.69
HMGB3P19-201ENST00000403971 ST18O60284 1047 aa10.72□□□□□ -0.69
HMGB3P19-201ENST00000403971 COL9A1P20849 921 aa10.72□□□□□ -0.69
HMGB3P19-201ENST00000403971 PADI6Q6TGC4 694 aa10.72□□□□□ -0.69
HMGB3P19-201ENST00000403971 PSDA5PKW4 1024 aaPredicted RBP10.71□□□□□ -0.69
HMGB3P19-201ENST00000403971 FAM161AQ3B820 660 aa10.71□□□□□ -0.69
HMGB3P19-201ENST00000403971 BCL2L12Q9HB09 334 aa10.71□□□□□ -0.69
HMGB3P19-201ENST00000403971 MARVELD3Q96A59 401 aa10.69□□□□□ -0.7
HMGB3P19-201ENST00000403971 CERKQ8TCT0 537 aa10.68□□□□□ -0.7
HMGB3P19-201ENST00000403971 ERBB3P21860 1342 aa10.67□□□□□ -0.7
HMGB3P19-201ENST00000403971 PTPREP23469 700 aa10.67□□□□□ -0.7
HMGB3P19-201ENST00000403971 PRSS12P56730 875 aa10.67□□□□□ -0.7
HMGB3P19-201ENST00000403971 VARS2Q5ST30 1063 aaKnown RBP10.67□□□□□ -0.7
HMGB3P19-201ENST00000403971 FAM163AQ96GL9 167 aaPredicted RBP10.66□□□□□ -0.7
HMGB3P19-201ENST00000403971 CDCA7LQ96GN5 454 aa10.66□□□□□ -0.7
HMGB3P19-201ENST00000403971 KCNK17Q96T54 332 aa10.66□□□□□ -0.7
HMGB3P19-201ENST00000403971 PHOX2BQ99453 314 aa10.66□□□□□ -0.7
HMGB3P19-201ENST00000403971 KDM4CQ9H3R0 1056 aa10.66□□□□□ -0.7
HMGB3P19-201ENST00000403971 FAM198AQ9UFP1 575 aa10.66□□□□□ -0.7
HMGB3P19-201ENST00000403971 EMP3P54852 163 aa10.65□□□□□ -0.7
HMGB3P19-201ENST00000403971 AMHR2Q16671 573 aa10.65□□□□□ -0.7
HMGB3P19-201ENST00000403971 TTC13Q8NBP0 860 aa10.65□□□□□ -0.7
HMGB3P19-201ENST00000403971 PPP1R3GB7ZBB8 358 aa10.64□□□□□ -0.71
HMGB3P19-201ENST00000403971 PARP9Q8IXQ6 854 aa10.64□□□□□ -0.71
HMGB3P19-201ENST00000403971 TMEM132AQ24JP5 1023 aa10.63□□□□□ -0.71
HMGB3P19-201ENST00000403971 NLRP7Q8WX94 980 aa10.63□□□□□ -0.71
HMGB3P19-201ENST00000403971 RBM27Q9P2N5 1060 aaKnown RBP10.63□□□□□ -0.71
HMGB3P19-201ENST00000403971 ADGRG1Q9Y653 693 aa10.63□□□□□ -0.71
HMGB3P19-201ENST00000403971 PSEN2P49810 448 aa10.62□□□□□ -0.71
HMGB3P19-201ENST00000403971 TTLL12Q14166 644 aaPredicted RBP10.62□□□□□ -0.71
HMGB3P19-201ENST00000403971 POTEEQ6S8J3 1075 aa10.62□□□□□ -0.71
HMGB3P19-201ENST00000403971 REPIN1Q9BWE0 567 aaKnown RBP10.62□□□□□ -0.71
HMGB3P19-201ENST00000403971 TSKSQ9UJT2 592 aa10.62□□□□□ -0.71
HMGB3P19-201ENST00000403971 FAM205CA6NFA0 338 aa10.61□□□□□ -0.71
HMGB3P19-201ENST00000403971 C3orf80F5H4A9 247 aa10.61□□□□□ -0.71
HMGB3P19-201ENST00000403971 PROX2Q3B8N5 592 aa10.61□□□□□ -0.71
HMGB3P19-201ENST00000403971 METTL3Q86U44 580 aaKnown RBP10.61□□□□□ -0.71
HMGB3P19-201ENST00000403971 AXIN2Q9Y2T1 843 aa10.61□□□□□ -0.71
HMGB3P19-201ENST00000403971 LCE2DQ5TA82 110 aaPredicted RBP10.6□□□□□ -0.71
HMGB3P19-201ENST00000403971 MDM2Q00987 491 aaPredicted RBP10.59□□□□□ -0.71
HMGB3P19-201ENST00000403971 IL27Q8NEV9 243 aa10.59□□□□□ -0.71
HMGB3P19-201ENST00000403971 PXYLP1Q8TE99 480 aa10.59□□□□□ -0.71
HMGB3P19-201ENST00000403971 POTEB3A0JP26 581 aa10.58□□□□□ -0.72
HMGB3P19-201ENST00000403971 OATP04181 439 aa10.58□□□□□ -0.72
HMGB3P19-201ENST00000403971 POTEBQ6S5H4 581 aa10.58□□□□□ -0.72
HMGB3P19-201ENST00000403971 TRIM6-TRIM34B2RNG4 842 aa10.57□□□□□ -0.72
HMGB3P19-201ENST00000403971 GIGYF2Q6Y7W6 1299 aaKnown RBP10.57□□□□□ -0.72
HMGB3P19-201ENST00000403971 FAM117AQ9C073 453 aa10.57□□□□□ -0.72
HMGB3P19-201ENST00000403971 DMRTA1Q5VZB9 504 aa10.56□□□□□ -0.72
HMGB3P19-201ENST00000403971 ARHGAP33O14559 1287 aa10.55□□□□□ -0.72
HMGB3P19-201ENST00000403971 NUDT18Q6ZVK8 323 aa10.55□□□□□ -0.72
HMGB3P19-201ENST00000403971 RBM46Q8TBY0 533 aaKnown RBP10.55□□□□□ -0.72
HMGB3P19-201ENST00000403971 KCNH8Q96L42 1107 aa10.55□□□□□ -0.72
HMGB3P19-201ENST00000403971 HS3ST6Q96QI5 342 aa10.55□□□□□ -0.72
HMGB3P19-201ENST00000403971 ZBED2Q9BTP6 218 aa10.55□□□□□ -0.72
HMGB3P19-201ENST00000403971 TMUB1Q9BVT8 246 aa10.55□□□□□ -0.72
HMGB3P19-201ENST00000403971 SMAPO00193 183 aa10.54□□□□□ -0.72
HMGB3P19-201ENST00000403971 MS4A1P11836 297 aa10.54□□□□□ -0.72
HMGB3P19-201ENST00000403971 EYA1Q99502 592 aa10.54□□□□□ -0.72
HMGB3P19-201ENST00000403971 PNMA3Q9UL41 463 aa10.54□□□□□ -0.72
HMGB3P19-201ENST00000403971 CLCN1P35523 988 aa10.53□□□□□ -0.72
HMGB3P19-201ENST00000403971 ZNF687Q8N1G0 1237 aa10.53□□□□□ -0.72
HMGB3P19-201ENST00000403971 TATDN2Q93075 761 aa10.53□□□□□ -0.72
HMGB3P19-201ENST00000403971 GPCPD1Q9NPB8 672 aa10.53□□□□□ -0.72
HMGB3P19-201ENST00000403971 PACS2Q86VP3 889 aa10.52□□□□□ -0.73
HMGB3P19-201ENST00000403971 KIAA1468Q9P260 1216 aa10.52□□□□□ -0.73
HMGB3P19-201ENST00000403971 PLEKHG3A1L390 1219 aa10.51□□□□□ -0.73
HMGB3P19-201ENST00000403971 RCCD1A6NED2 376 aa10.51□□□□□ -0.73
HMGB3P19-201ENST00000403971 NBPF26B4DH59 902 aa10.51□□□□□ -0.73
HMGB3P19-201ENST00000403971 PBX2P40425 430 aa10.49□□□□□ -0.73
HMGB3P19-201ENST00000403971 ONECUT3O60422 494 aaPredicted RBP10.48□□□□□ -0.73
HMGB3P19-201ENST00000403971 SSTR3P32745 418 aaPredicted RBP10.48□□□□□ -0.73
HMGB3P19-201ENST00000403971 FAM217BQ9NTX9 383 aaPredicted RBP10.48□□□□□ -0.73
HMGB3P19-201ENST00000403971 GTF3C3Q9Y5Q9 886 aa10.48□□□□□ -0.73
HMGB3P19-201ENST00000403971 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP10.47□□□□□ -0.73
HMGB3P19-201ENST00000403971 DDRGK1Q96HY6 314 aa10.47□□□□□ -0.73
HMGB3P19-201ENST00000403971 SEPT9Q9UHD8 586 aaPredicted RBP10.47□□□□□ -0.73
HMGB3P19-201ENST00000403971 SLC4A5Q9BY07 1137 aa10.46□□□□□ -0.73
HMGB3P19-201ENST00000403971 VPS9D1Q9Y2B5 631 aa10.46□□□□□ -0.73
HMGB3P19-201ENST00000403971 DNAJB2P25686 324 aa10.45□□□□□ -0.74
HMGB3P19-201ENST00000403971 RABGEF1Q9UJ41 708 aa10.45□□□□□ -0.74
HMGB3P19-201ENST00000403971 BEGAINQ9BUH8 593 aa10.43□□□□□ -0.74
HMGB3P19-201ENST00000403971 TMEM134Q9H6X4 195 aa10.43□□□□□ -0.74
HMGB3P19-201ENST00000403971 DAXXQ9UER7 740 aaPredicted RBP10.43□□□□□ -0.74
HMGB3P19-201ENST00000403971 DDX11L8A8MPP1 907 aa10.4□□□□□ -0.74
HMGB3P19-201ENST00000403971 LSM11P83369 360 aaKnown RBP eCLIP10.4□□□□□ -0.74
HMGB3P19-201ENST00000403971 BHMG1C9JSJ3 638 aaPredicted RBP10.38□□□□□ -0.75
HMGB3P19-201ENST00000403971 SWT1Q5T5J6 900 aaKnown RBP10.38□□□□□ -0.75
HMGB3P19-201ENST00000403971 TK2O00142 265 aa10.37□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms