RNA–Protein interactions for RNA: ENST00000400301.5

USP48-204, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 4,309 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-204ENST00000400301 FTSJ3Q8IY81 847 aaKnown RBP24.03■■□□□ 1.44
USP48-204ENST00000400301 MAPK8IP3Q9UPT6 1336 aa24.03■■□□□ 1.44
USP48-204ENST00000400301 UGGT2Q9NYU1 1516 aa24.03■■□□□ 1.44
USP48-204ENST00000400301 GRIN2AQ12879 1464 aa24.02■■□□□ 1.44
USP48-204ENST00000400301 PLIN1O60240 522 aa24.02■■□□□ 1.44
USP48-204ENST00000400301 THOC2Q8NI27 1593 aaKnown RBP24.01■■□□□ 1.43
USP48-204ENST00000400301 HSP90AA1P07900 732 aaKnown RBP24.01■■□□□ 1.43
USP48-204ENST00000400301 SRPK2P78362 688 aaKnown RBP24.01■■□□□ 1.43
USP48-204ENST00000400301 AKNAQ7Z591 1439 aa24.01■■□□□ 1.43
USP48-204ENST00000400301 STK26Q9P289 416 aa24■■□□□ 1.43
USP48-204ENST00000400301 CAMSAP2Q08AD1 1489 aa24■■□□□ 1.43
USP48-204ENST00000400301 CTTNBP2Q8WZ74 1663 aa24■■□□□ 1.43
USP48-204ENST00000400301 FANCIQ9NVI1 1328 aa23.99■■□□□ 1.43
USP48-204ENST00000400301 NCOA1Q15788 1441 aa23.99■■□□□ 1.43
USP48-204ENST00000400301 RPRD2Q5VT52 1461 aaKnown RBP23.98■■□□□ 1.43
USP48-204ENST00000400301 BRD4O60885 1362 aaPredicted RBP23.98■■□□□ 1.43
USP48-204ENST00000400301 PNISRQ8TF01 805 aaKnown RBP23.98■■□□□ 1.43
USP48-204ENST00000400301 ARHGAP5Q13017 1502 aa23.97■■□□□ 1.43
USP48-204ENST00000400301 BECN1Q14457 450 aa23.97■■□□□ 1.43
USP48-204ENST00000400301 TRAK1Q9UPV9 953 aa23.97■■□□□ 1.43
USP48-204ENST00000400301 AFAP1Q8N556 730 aa23.96■■□□□ 1.43
USP48-204ENST00000400301 IPO9Q96P70 1041 aaKnown RBP23.96■■□□□ 1.43
USP48-204ENST00000400301 NUTM2DQ5VT03 806 aaPredicted RBP23.94■■□□□ 1.42
USP48-204ENST00000400301 ARHGEF11O15085 1522 aa23.93■■□□□ 1.42
USP48-204ENST00000400301 WASHC2CQ9Y4E1 1318 aa23.93■■□□□ 1.42
USP48-204ENST00000400301 U2AF1L5P0DN76 240 aaPredicted RBP23.92■■□□□ 1.42
USP48-204ENST00000400301 U2AF1Q01081 240 aaKnown RBP eCLIP23.92■■□□□ 1.421e-6■■■□□ 16.8
USP48-204ENST00000400301 DEKP35659 375 aaKnown RBP23.91■■□□□ 1.42
USP48-204ENST00000400301 MAGI1Q96QZ7 1491 aaPredicted RBP23.91■■□□□ 1.42
USP48-204ENST00000400301 CRBNQ96SW2 442 aa23.9■■□□□ 1.42
USP48-204ENST00000400301 MYH16Q9H6N6 1097 aa23.88■■□□□ 1.41
USP48-204ENST00000400301 ARXQ96QS3 562 aa23.87■■□□□ 1.41
USP48-204ENST00000400301 CDCA7LQ96GN5 454 aa23.87■■□□□ 1.41
USP48-204ENST00000400301 APAF1O14727 1248 aa23.86■■□□□ 1.41
USP48-204ENST00000400301 PDE4AP27815 886 aa23.85■■□□□ 1.41
USP48-204ENST00000400301 MLECQ14165 292 aa23.85■■□□□ 1.41
USP48-204ENST00000400301 NUP153P49790 1475 aaKnown RBP23.85■■□□□ 1.41
USP48-204ENST00000400301 TCOF1Q13428 1488 aaKnown RBP23.85■■□□□ 1.41
USP48-204ENST00000400301 GPATCH8Q9UKJ3 1502 aaKnown RBP23.84■■□□□ 1.41
USP48-204ENST00000400301 MS4A1P11836 297 aa23.83■■□□□ 1.41
USP48-204ENST00000400301 ADAMTS8Q9UP79 889 aa23.83■■□□□ 1.41
USP48-204ENST00000400301 STAC3Q96MF2 364 aa23.82■■□□□ 1.4
USP48-204ENST00000400301 RRP7AQ9Y3A4 280 aaKnown RBP23.82■■□□□ 1.4
USP48-204ENST00000400301 CENPJQ9HC77 1338 aaPredicted RBP23.81■■□□□ 1.4
USP48-204ENST00000400301 SMG6Q86US8 1419 aaKnown RBP23.8■■□□□ 1.4
USP48-204ENST00000400301 CCDC141Q6ZP82 1450 aa23.79■■□□□ 1.4
USP48-204ENST00000400301 PNNQ9H307 717 aaKnown RBP23.79■■□□□ 1.4
USP48-204ENST00000400301 CFAP70Q5T0N1 1121 aa23.78■■□□□ 1.4
USP48-204ENST00000400301 HDGFL2Q7Z4V5 671 aaPredicted RBP23.77■■□□□ 1.4
USP48-204ENST00000400301 CLUAP1Q96AJ1 413 aa23.77■■□□□ 1.4
USP48-204ENST00000400301 PLEKHH2Q8IVE3 1493 aa23.76■■□□□ 1.39
USP48-204ENST00000400301 WDR62O43379 1518 aa23.76■■□□□ 1.39
USP48-204ENST00000400301 E9PSI1 815 aa23.75■■□□□ 1.39
USP48-204ENST00000400301 RAPGEF6Q8TEU7 1601 aa23.75■■□□□ 1.39
USP48-204ENST00000400301 ADAMTS12P58397 1594 aa23.75■■□□□ 1.39
USP48-204ENST00000400301 CENPQQ7L2Z9 268 aaPredicted RBP23.75■■□□□ 1.39
USP48-204ENST00000400301 PPP2R1AP30153 589 aa23.74■■□□□ 1.39
USP48-204ENST00000400301 KIF14Q15058 1648 aa23.73■■□□□ 1.39
USP48-204ENST00000400301 ABCA5Q8WWZ7 1642 aa23.72■■□□□ 1.39
USP48-204ENST00000400301 SAMD9Q5K651 1589 aa23.71■■□□□ 1.39
USP48-204ENST00000400301 VGFO15240 615 aaPredicted RBP23.71■■□□□ 1.39
USP48-204ENST00000400301 TERF2IPQ9NYB0 399 aa23.71■■□□□ 1.39
USP48-204ENST00000400301 ERBINQ96RT1 1412 aa23.7■■□□□ 1.39
USP48-204ENST00000400301 BCL2L13Q9BXK5 485 aa23.7■■□□□ 1.38
USP48-204ENST00000400301 RWDD1Q9H446 243 aaPredicted RBP23.69■■□□□ 1.38
USP48-204ENST00000400301 CGNL1Q0VF96 1302 aa23.69■■□□□ 1.38
USP48-204ENST00000400301 KIF21AQ7Z4S6 1674 aa23.68■■□□□ 1.38
USP48-204ENST00000400301 SMC4Q9NTJ3 1288 aa23.67■■□□□ 1.38
USP48-204ENST00000400301 KIAA0556O60303 1618 aa23.67■■□□□ 1.38
USP48-204ENST00000400301 C14orf37Q86TY3 774 aa23.67■■□□□ 1.38
USP48-204ENST00000400301 EVC2Q86UK5 1308 aa23.66■■□□□ 1.38
USP48-204ENST00000400301 ATP10BO94823 1461 aa23.66■■□□□ 1.38
USP48-204ENST00000400301 TMEM132EQ6IEE7 984 aa23.66■■□□□ 1.38
USP48-204ENST00000400301 PMFBP1Q8TBY8 1022 aa23.66■■□□□ 1.38
USP48-204ENST00000400301 COG6Q9Y2V7 657 aa23.66■■□□□ 1.38
USP48-204ENST00000400301 MAGI3Q5TCQ9 1506 aa23.66■■□□□ 1.38
USP48-204ENST00000400301 ITPRIPQ8IWB1 547 aa23.65■■□□□ 1.38
USP48-204ENST00000400301 EIF5BO60841 1220 aaKnown RBP23.65■■□□□ 1.38
USP48-204ENST00000400301 SCAPERQ9BY12 1400 aa23.64■■□□□ 1.38
USP48-204ENST00000400301 IPO8O15397 1037 aaKnown RBP23.63■■□□□ 1.37
USP48-204ENST00000400301 CHMP4BQ9H444 224 aaKnown RBP23.63■■□□□ 1.37
USP48-204ENST00000400301 SOX12O15370 315 aa23.63■■□□□ 1.37
USP48-204ENST00000400301 FAM161AQ3B820 660 aa23.63■■□□□ 1.37
USP48-204ENST00000400301 PLEKHG5O94827 1062 aa23.62■■□□□ 1.37
USP48-204ENST00000400301 ANP32BQ92688 251 aaKnown RBP23.62■■□□□ 1.37
USP48-204ENST00000400301 NGEFQ8N5V2 710 aa23.62■■□□□ 1.37
USP48-204ENST00000400301 OSCARQ8IYS5 282 aa23.61■■□□□ 1.37
USP48-204ENST00000400301 DISP1Q96F81 1524 aa23.61■■□□□ 1.37
USP48-204ENST00000400301 SLC4A3P48751 1232 aa23.6■■□□□ 1.37
USP48-204ENST00000400301 RTN4Q9NQC3 1192 aaKnown RBP23.6■■□□□ 1.37
USP48-204ENST00000400301 MINK1Q8N4C8 1332 aaPredicted RBP23.6■■□□□ 1.37
USP48-204ENST00000400301 ZBTB7CA1YPR0 619 aa23.6■■□□□ 1.37
USP48-204ENST00000400301 HDGFP51858 240 aaKnown RBP23.59■■□□□ 1.37
USP48-204ENST00000400301 SUGP2Q8IX01 1082 aaKnown RBP eCLIP23.59■■□□□ 1.37
USP48-204ENST00000400301 SPRYD3Q8NCJ5 442 aa23.58■■□□□ 1.37
USP48-204ENST00000400301 SLKQ9H2G2 1235 aaPredicted RBP23.58■■□□□ 1.36
USP48-204ENST00000400301 RUNDC1Q96C34 613 aa23.56■■□□□ 1.36
USP48-204ENST00000400301 PZPP20742 1482 aa23.56■■□□□ 1.36
USP48-204ENST00000400301 MSH5O43196 834 aa23.54■■□□□ 1.36
USP48-204ENST00000400301 SLC12A5Q9H2X9 1139 aa23.54■■□□□ 1.36
Retrieved 100 of 20,778 RNA–protein pairs in 97.6 ms