RNA–Protein interactions for RNA: ENST00000397906.6

TTC28-201, Transcript of tetratricopeptide repeat domain 28, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene TTC28, Length 11,795 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28-201ENST00000397906 MINK1Q8N4C8 1332 aaPredicted RBP14.28□□□□□ -0.12
TTC28-201ENST00000397906 TOP2AP11388 1531 aaKnown RBP14.28□□□□□ -0.12
TTC28-201ENST00000397906 NAP1L5Q96NT1 182 aaPredicted RBP14.27□□□□□ -0.12
TTC28-201ENST00000397906 NOP58Q9Y2X3 529 aaKnown RBP14.27□□□□□ -0.12
TTC28-201ENST00000397906 RAD21O60216 631 aa14.27□□□□□ -0.13
TTC28-201ENST00000397906 ELL2O00472 640 aaPredicted RBP14.27□□□□□ -0.13
TTC28-201ENST00000397906 RCAN3Q9UKA8 241 aa14.26□□□□□ -0.13
TTC28-201ENST00000397906 L3MBTL2Q969R5 705 aa14.26□□□□□ -0.13
TTC28-201ENST00000397906 RASSF8Q8NHQ8 419 aa14.26□□□□□ -0.13
TTC28-201ENST00000397906 FANCD2Q9BXW9 1451 aa14.25□□□□□ -0.13
TTC28-201ENST00000397906 RALBP1Q15311 655 aa14.25□□□□□ -0.13
TTC28-201ENST00000397906 COG3Q96JB2 828 aa14.25□□□□□ -0.13
TTC28-201ENST00000397906 CCDC144AA2RUR9 1427 aa14.25□□□□□ -0.13
TTC28-201ENST00000397906 MFAP1P55081 439 aaKnown RBP14.25□□□□□ -0.13
TTC28-201ENST00000397906 NECTIN2Q92692 538 aa14.25□□□□□ -0.13
TTC28-201ENST00000397906 RWDD1Q9H446 243 aaPredicted RBP14.25□□□□□ -0.13
TTC28-201ENST00000397906 FBXW7Q969H0 707 aa14.25□□□□□ -0.13
TTC28-201ENST00000397906 PRM3Q9NNZ6 103 aa14.25□□□□□ -0.13
TTC28-201ENST00000397906 CREBRFQ8IUR6 639 aa14.24□□□□□ -0.13
TTC28-201ENST00000397906 PTPRGP23470 1445 aa14.24□□□□□ -0.13
TTC28-201ENST00000397906 PSME1Q06323 249 aa14.24□□□□□ -0.13
TTC28-201ENST00000397906 TTC5Q8N0Z6 440 aa14.23□□□□□ -0.13
TTC28-201ENST00000397906 EIF2S2P20042 333 aaKnown RBP14.22□□□□□ -0.13
TTC28-201ENST00000397906 FOXD4L1Q9NU39 408 aa14.22□□□□□ -0.13
TTC28-201ENST00000397906 KIAA2012Q0VF49 1180 aa14.22□□□□□ -0.13
TTC28-201ENST00000397906 HMMRO75330 724 aa14.22□□□□□ -0.13
TTC28-201ENST00000397906 GZF1Q9H116 711 aaPredicted RBP14.21□□□□□ -0.13
TTC28-201ENST00000397906 CFAP44Q96MT7 982 aa14.21□□□□□ -0.13
TTC28-201ENST00000397906 CHMP4AQ9BY43 222 aa14.21□□□□□ -0.14
TTC28-201ENST00000397906 LMOD3Q0VAK6 560 aa14.2□□□□□ -0.14
TTC28-201ENST00000397906 NUTM2GQ5VZR2 741 aa14.2□□□□□ -0.14
TTC28-201ENST00000397906 SLKQ9H2G2 1235 aaPredicted RBP14.2□□□□□ -0.14
TTC28-201ENST00000397906 RSPH4AQ5TD94 716 aa14.2□□□□□ -0.14
TTC28-201ENST00000397906 BCL2L13Q9BXK5 485 aa14.19□□□□□ -0.14
TTC28-201ENST00000397906 MARCH6O60337 910 aa14.19□□□□□ -0.14
TTC28-201ENST00000397906 TEFQ10587 303 aa14.19□□□□□ -0.14
TTC28-201ENST00000397906 TIMELESSQ9UNS1 1208 aa14.19□□□□□ -0.14
TTC28-201ENST00000397906 VGFO15240 615 aaPredicted RBP14.19□□□□□ -0.14
TTC28-201ENST00000397906 CENPJQ9HC77 1338 aaPredicted RBP14.18□□□□□ -0.14
TTC28-201ENST00000397906 PANK3Q9H999 370 aa14.18□□□□□ -0.14
TTC28-201ENST00000397906 CHAF1AQ13111 956 aaPredicted RBP14.18□□□□□ -0.14
TTC28-201ENST00000397906 ATF3P18847 181 aa14.18□□□□□ -0.14
TTC28-201ENST00000397906 EVC2Q86UK5 1308 aa14.17□□□□□ -0.14
TTC28-201ENST00000397906 UACAQ9BZF9 1416 aa14.17□□□□□ -0.14
TTC28-201ENST00000397906 FOXD4L5Q5VV16 416 aaPredicted RBP14.17□□□□□ -0.14
TTC28-201ENST00000397906 PMFBP1Q8TBY8 1022 aa14.17□□□□□ -0.14
TTC28-201ENST00000397906 FOXD4L4Q8WXT5 416 aaPredicted RBP14.17□□□□□ -0.14
TTC28-201ENST00000397906 CGNL1Q0VF96 1302 aa14.16□□□□□ -0.14
TTC28-201ENST00000397906 ST20-MTHFSA0A0A6YYL1 179 aa14.16□□□□□ -0.14
TTC28-201ENST00000397906 MSNP26038 577 aaKnown RBP14.16□□□□□ -0.14
TTC28-201ENST00000397906 HDAC5Q9UQL6 1122 aa14.16□□□□□ -0.14
TTC28-201ENST00000397906 TRIM34Q9BYJ4 488 aa14.16□□□□□ -0.14
TTC28-201ENST00000397906 NOC3LQ8WTT2 800 aaKnown RBP14.16□□□□□ -0.14
TTC28-201ENST00000397906 CCER2I3L3R5 266 aa14.16□□□□□ -0.14
TTC28-201ENST00000397906 RILPL2Q969X0 211 aa14.16□□□□□ -0.14
TTC28-201ENST00000397906 SMARCA4P51532 1647 aa14.16□□□□□ -0.14
TTC28-201ENST00000397906 USP35Q9P2H5 1018 aa14.15□□□□□ -0.14
TTC28-201ENST00000397906 SAMD1Q6SPF0 538 aaPredicted RBP14.14□□□□□ -0.15
TTC28-201ENST00000397906 ATAD2BQ9ULI0 1458 aa14.14□□□□□ -0.15
TTC28-201ENST00000397906 VPS37DQ86XT2 251 aa14.14□□□□□ -0.15
TTC28-201ENST00000397906 HTATSF1O43719 755 aaKnown RBP14.13□□□□□ -0.15
TTC28-201ENST00000397906 CTDP1Q9Y5B0 961 aaPredicted RBP14.12□□□□□ -0.15
TTC28-201ENST00000397906 WWC1Q8IX03 1113 aa14.12□□□□□ -0.15
TTC28-201ENST00000397906 C9orf78Q9NZ63 289 aaPredicted RBP14.12□□□□□ -0.15
TTC28-201ENST00000397906 TCERG1O14776 1098 aaKnown RBP14.11□□□□□ -0.15
TTC28-201ENST00000397906 NEXNQ0ZGT2 675 aa14.11□□□□□ -0.15
TTC28-201ENST00000397906 PPP1R1BQ9UD71 204 aaPredicted RBP14.11□□□□□ -0.15
TTC28-201ENST00000397906 TCEAL9Q9UHQ7 104 aa14.11□□□□□ -0.15
TTC28-201ENST00000397906 NOL10Q9BSC4 688 aaKnown RBP14.11□□□□□ -0.15
TTC28-201ENST00000397906 RAD54L2Q9Y4B4 1467 aa14.1□□□□□ -0.15
TTC28-201ENST00000397906 PES1O00541 588 aaKnown RBP14.1□□□□□ -0.15
TTC28-201ENST00000397906 NLRP13Q86W25 1043 aa14.1□□□□□ -0.15
TTC28-201ENST00000397906 KIF15Q9NS87 1388 aa14.09□□□□□ -0.15
TTC28-201ENST00000397906 GBP4Q96PP9 640 aa14.09□□□□□ -0.15
TTC28-201ENST00000397906 GAPVD1Q14C86 1478 aa14.09□□□□□ -0.15
TTC28-201ENST00000397906 L1TD1Q5T7N2 865 aaKnown RBP14.09□□□□□ -0.15
TTC28-201ENST00000397906 KIF16BQ96L93 1317 aa14.08□□□□□ -0.16
TTC28-201ENST00000397906 ARID3AQ99856 593 aa14.08□□□□□ -0.16
TTC28-201ENST00000397906 AMOTL1Q8IY63 956 aa14.08□□□□□ -0.16
TTC28-201ENST00000397906 CWC22Q9HCG8 908 aaKnown RBP14.08□□□□□ -0.16
TTC28-201ENST00000397906 ANKRD45Q5TZF3 282 aa14.08□□□□□ -0.16
TTC28-201ENST00000397906 FOXD4L6Q3SYB3 417 aaPredicted RBP14.08□□□□□ -0.16
TTC28-201ENST00000397906 FOXD4L3Q6VB84 417 aaPredicted RBP14.08□□□□□ -0.16
TTC28-201ENST00000397906 APPP05067 770 aa14.07□□□□□ -0.16
TTC28-201ENST00000397906 PLIN1O60240 522 aa14.07□□□□□ -0.16
TTC28-201ENST00000397906 NLRP2Q9NX02 1062 aa14.07□□□□□ -0.16
TTC28-201ENST00000397906 TPM4P67936 248 aa14.07□□□□□ -0.16
TTC28-201ENST00000397906 RUSC2Q8N2Y8 1516 aa14.07□□□□□ -0.16
TTC28-201ENST00000397906 DHX16O60231 1041 aaKnown RBP14.07□□□□□ -0.16
TTC28-201ENST00000397906 AQRO60306 1485 aaKnown RBP eCLIP14.07□□□□□ -0.16
TTC28-201ENST00000397906 HMOX1P09601 288 aa14.06□□□□□ -0.16
TTC28-201ENST00000397906 FGD5Q6ZNL6 1462 aa14.06□□□□□ -0.16
TTC28-201ENST00000397906 NUTM2BA6NNL0 878 aaPredicted RBP14.06□□□□□ -0.16
TTC28-201ENST00000397906 NUTM2EB1AL46 878 aaPredicted RBP14.06□□□□□ -0.16
TTC28-201ENST00000397906 NUTM2AQ8IVF1 878 aaPredicted RBP14.06□□□□□ -0.16
TTC28-201ENST00000397906 H3BQV1 296 aa14.05□□□□□ -0.16
TTC28-201ENST00000397906 IFFO2Q5TF58 517 aa14.05□□□□□ -0.16
TTC28-201ENST00000397906 MYBBP1AQ9BQG0 1328 aaKnown RBP14.05□□□□□ -0.16
TTC28-201ENST00000397906 AIMP1Q12904 312 aaKnown RBP14.05□□□□□ -0.16
TTC28-201ENST00000397906 DIAPH1O60610 1272 aaKnown RBP14.05□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms