RNA–Protein interactions for RNA: ENST00000397606.7

PTPRD-204, Transcript of protein tyrosine phosphatase, receptor type D, humanhuman

TSL 1 (best) BASIC

Gene PTPRD, Length 5,038 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRD-204ENST00000397606 ZBTB7CA1YPR0 619 aa11.06□□□□□ -0.64
PTPRD-204ENST00000397606 PLEKHG5O94827 1062 aa11.06□□□□□ -0.64
PTPRD-204ENST00000397606 DHX29Q7Z478 1369 aaKnown RBP11.04□□□□□ -0.64
PTPRD-204ENST00000397606 UHRF1BP1LA0JNW5 1464 aa11.04□□□□□ -0.64
PTPRD-204ENST00000397606 PPM1GO15355 546 aaPredicted RBP11.04□□□□□ -0.64
PTPRD-204ENST00000397606 PPP6R1Q9UPN7 881 aa11.04□□□□□ -0.64
PTPRD-204ENST00000397606 NUDCQ9Y266 331 aa11.04□□□□□ -0.64
PTPRD-204ENST00000397606 ZNF518AQ6AHZ1 1483 aa11.04□□□□□ -0.64
PTPRD-204ENST00000397606 ST20-MTHFSA0A0A6YYL1 179 aa11.04□□□□□ -0.64
PTPRD-204ENST00000397606 CC2D1BQ5T0F9 858 aaKnown RBP11.04□□□□□ -0.64
PTPRD-204ENST00000397606 SALL2Q9Y467 1007 aaPredicted RBP11.04□□□□□ -0.64
PTPRD-204ENST00000397606 TERF2IPQ9NYB0 399 aa11.02□□□□□ -0.64
PTPRD-204ENST00000397606 USP47Q96K76 1375 aa11.02□□□□□ -0.65
PTPRD-204ENST00000397606 THEMISQ8N1K5 641 aaPredicted RBP11.02□□□□□ -0.65
PTPRD-204ENST00000397606 TCOF1Q13428 1488 aaKnown RBP11.01□□□□□ -0.65
PTPRD-204ENST00000397606 MORC1Q86VD1 984 aa11.01□□□□□ -0.65
PTPRD-204ENST00000397606 SYCP2Q9BX26 1530 aa11.01□□□□□ -0.65
PTPRD-204ENST00000397606 ABCA8O94911 1581 aa11.01□□□□□ -0.65
PTPRD-204ENST00000397606 TNNT2P45379 298 aaPredicted RBP11□□□□□ -0.65
PTPRD-204ENST00000397606 ABCC10Q5T3U5 1492 aa11□□□□□ -0.65
PTPRD-204ENST00000397606 KTN1Q86UP2 1357 aaKnown RBP11□□□□□ -0.65
PTPRD-204ENST00000397606 EVC2Q86UK5 1308 aa11□□□□□ -0.65
PTPRD-204ENST00000397606 RPGRIP1LQ68CZ1 1315 aa10.99□□□□□ -0.65
PTPRD-204ENST00000397606 KDM5BQ9UGL1 1544 aa10.99□□□□□ -0.65
PTPRD-204ENST00000397606 TRAPPC8Q9Y2L5 1435 aa10.99□□□□□ -0.65
PTPRD-204ENST00000397606 TXNDC2Q86VQ3 553 aa10.99□□□□□ -0.65
PTPRD-204ENST00000397606 ZBTB47Q9UFB7 747 aaPredicted RBP10.98□□□□□ -0.65
PTPRD-204ENST00000397606 DUOX2Q9NRD8 1548 aa10.98□□□□□ -0.65
PTPRD-204ENST00000397606 ANKRD30BQ9BXX2 1392 aa10.97□□□□□ -0.65
PTPRD-204ENST00000397606 A2MP01023 1474 aa10.97□□□□□ -0.65
PTPRD-204ENST00000397606 ERBINQ96RT1 1412 aa10.97□□□□□ -0.65
PTPRD-204ENST00000397606 RALBP1Q15311 655 aa10.97□□□□□ -0.65
PTPRD-204ENST00000397606 CENPJQ9HC77 1338 aaPredicted RBP10.97□□□□□ -0.65
PTPRD-204ENST00000397606 NGDNQ8NEJ9 315 aaKnown RBP10.97□□□□□ -0.65
PTPRD-204ENST00000397606 PNNQ9H307 717 aaKnown RBP10.97□□□□□ -0.65
PTPRD-204ENST00000397606 RTEL1-TNFRSF6BF6WH68 1400 aa10.97□□□□□ -0.65
PTPRD-204ENST00000397606 MAPK8IP3Q9UPT6 1336 aa10.97□□□□□ -0.65
PTPRD-204ENST00000397606 SHANK2Q9UPX8 1470 aa10.96□□□□□ -0.65
PTPRD-204ENST00000397606 PTPRKQ15262 1439 aa10.96□□□□□ -0.65
PTPRD-204ENST00000397606 PAK3O75914 559 aaPredicted RBP10.96□□□□□ -0.66
PTPRD-204ENST00000397606 CCER2I3L3R5 266 aa10.96□□□□□ -0.66
PTPRD-204ENST00000397606 ERICH6Q7L0X2 663 aa10.95□□□□□ -0.66
PTPRD-204ENST00000397606 CFAP70Q5T0N1 1121 aa10.95□□□□□ -0.66
PTPRD-204ENST00000397606 MINK1Q8N4C8 1332 aaPredicted RBP10.95□□□□□ -0.66
PTPRD-204ENST00000397606 GOLGA6L2Q8N9W4 650 aaPredicted RBP10.94□□□□□ -0.66
PTPRD-204ENST00000397606 U2SURPO15042 1029 aaKnown RBP10.94□□□□□ -0.66
PTPRD-204ENST00000397606 AEBP2Q6ZN18 517 aaPredicted RBP10.94□□□□□ -0.66
PTPRD-204ENST00000397606 SOX12O15370 315 aa10.94□□□□□ -0.66
PTPRD-204ENST00000397606 NEO1Q92859 1461 aa10.93□□□□□ -0.66
PTPRD-204ENST00000397606 ANKLE2Q86XL3 938 aa10.93□□□□□ -0.66
PTPRD-204ENST00000397606 TMEM132EQ6IEE7 984 aa10.93□□□□□ -0.66
PTPRD-204ENST00000397606 NUTM2FA1L443 756 aa10.93□□□□□ -0.66
PTPRD-204ENST00000397606 GTF3C3Q9Y5Q9 886 aa10.92□□□□□ -0.66
PTPRD-204ENST00000397606 ERCC6L2Q5T890 1561 aa10.91□□□□□ -0.66
PTPRD-204ENST00000397606 MAGI3Q5TCQ9 1506 aa10.91□□□□□ -0.66
PTPRD-204ENST00000397606 PANK3Q9H999 370 aa10.91□□□□□ -0.66
PTPRD-204ENST00000397606 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP10.9□□□□□ -0.66
PTPRD-204ENST00000397606 CLASP1Q7Z460 1538 aa10.9□□□□□ -0.66
PTPRD-204ENST00000397606 FBXO31Q5XUX0 539 aaPredicted RBP10.9□□□□□ -0.66
PTPRD-204ENST00000397606 DNMT1P26358 1616 aaKnown RBP10.89□□□□□ -0.67
PTPRD-204ENST00000397606 IDI1Q13907 227 aa10.89□□□□□ -0.67
PTPRD-204ENST00000397606 A0A0G2JS52 829 aa10.89□□□□□ -0.67
PTPRD-204ENST00000397606 NBPF8Q3BBV2 869 aa10.89□□□□□ -0.67
PTPRD-204ENST00000397606 NEUROD2Q15784 382 aa10.89□□□□□ -0.67
PTPRD-204ENST00000397606 NBPF1Q3BBV0 1214 aa10.89□□□□□ -0.67
PTPRD-204ENST00000397606 DAXXQ9UER7 740 aaPredicted RBP10.89□□□□□ -0.67
PTPRD-204ENST00000397606 CGNL1Q0VF96 1302 aa10.88□□□□□ -0.67
PTPRD-204ENST00000397606 NLRP13Q86W25 1043 aa10.88□□□□□ -0.67
PTPRD-204ENST00000397606 NPM2Q86SE8 214 aaKnown RBP10.88□□□□□ -0.67
PTPRD-204ENST00000397606 SUGP2Q8IX01 1082 aaKnown RBP eCLIP10.87□□□□□ -0.67
PTPRD-204ENST00000397606 ZCCHC11Q5TAX3 1644 aaKnown RBP10.87□□□□□ -0.67
PTPRD-204ENST00000397606 ADGRL2O95490 1459 aa10.87□□□□□ -0.67
PTPRD-204ENST00000397606 CEBPAP49715 358 aaPredicted RBP10.87□□□□□ -0.67
PTPRD-204ENST00000397606 MAPKBP1O60336 1514 aa10.87□□□□□ -0.67
PTPRD-204ENST00000397606 ATF3P18847 181 aa10.86□□□□□ -0.67
PTPRD-204ENST00000397606 CFAP74Q9C0B2 1584 aa10.86□□□□□ -0.67
PTPRD-204ENST00000397606 ATP7AQ04656 1500 aa10.86□□□□□ -0.67
PTPRD-204ENST00000397606 ATP10AO60312 1499 aa10.86□□□□□ -0.67
PTPRD-204ENST00000397606 CCDC7Q96M83 1385 aa10.86□□□□□ -0.67
PTPRD-204ENST00000397606 PRAM1Q96QH2 718 aa10.85□□□□□ -0.67
PTPRD-204ENST00000397606 RPRD2Q5VT52 1461 aaKnown RBP10.85□□□□□ -0.67
PTPRD-204ENST00000397606 KIF7Q2M1P5 1343 aa10.85□□□□□ -0.67
PTPRD-204ENST00000397606 SLC26A8Q96RN1 970 aa10.85□□□□□ -0.67
PTPRD-204ENST00000397606 MYO5CQ9NQX4 1742 aa10.85□□□□□ -0.67
PTPRD-204ENST00000397606 TNRQ92752 1358 aa10.85□□□□□ -0.67
PTPRD-204ENST00000397606 COG3Q96JB2 828 aa10.85□□□□□ -0.67
PTPRD-204ENST00000397606 U2AF1L5P0DN76 240 aaPredicted RBP10.85□□□□□ -0.67
PTPRD-204ENST00000397606 U2AF1Q01081 240 aaKnown RBP eCLIP10.85□□□□□ -0.67
PTPRD-204ENST00000397606 FAM135AQ9P2D6 1515 aa10.84□□□□□ -0.67
PTPRD-204ENST00000397606 PROSER2Q86WR7 435 aaPredicted RBP10.84□□□□□ -0.67
PTPRD-204ENST00000397606 FKBP8Q14318 412 aa10.84□□□□□ -0.67
PTPRD-204ENST00000397606 DNAJC5Q9H3Z4 198 aa10.84□□□□□ -0.67
PTPRD-204ENST00000397606 CSB-PGBD3P0DP91 1061 aa10.83□□□□□ -0.68
PTPRD-204ENST00000397606 ARHGEF5Q12774 1597 aa10.83□□□□□ -0.68
PTPRD-204ENST00000397606 AMPHP49418 695 aa10.83□□□□□ -0.68
PTPRD-204ENST00000397606 MYBBP1AQ9BQG0 1328 aaKnown RBP10.83□□□□□ -0.68
PTPRD-204ENST00000397606 PSME1Q06323 249 aa10.83□□□□□ -0.68
PTPRD-204ENST00000397606 CABP2Q9NPB3 220 aa10.82□□□□□ -0.68
PTPRD-204ENST00000397606 SENP3-EIF4A1A0A087X0R7 540 aa10.82□□□□□ -0.68
PTPRD-204ENST00000397606 MBD5Q9P267 1494 aa10.82□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms