RNA–Protein interactions for RNA: ENST00000395898.3

VPS13C-204, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13C, Length 11,012 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-204ENST00000395898 CENPJQ9HC77 1338 aaPredicted RBP6.8□□□□□ -1.32
VPS13C-204ENST00000395898 CADPSQ9ULU8 1353 aa6.79□□□□□ -1.32
VPS13C-204ENST00000395898 LRRFIP1Q32MZ4 808 aaKnown RBP6.79□□□□□ -1.32
VPS13C-204ENST00000395898 ZNF330Q9Y3S2 320 aaPredicted RBP6.79□□□□□ -1.32
VPS13C-204ENST00000395898 G3V3G9 751 aa6.78□□□□□ -1.32
VPS13C-204ENST00000395898 DCAF8Q5TAQ9 597 aa6.78□□□□□ -1.32
VPS13C-204ENST00000395898 NOC3LQ8WTT2 800 aaKnown RBP6.78□□□□□ -1.32
VPS13C-204ENST00000395898 MYBBP1AQ9BQG0 1328 aaKnown RBP6.78□□□□□ -1.32
VPS13C-204ENST00000395898 RTN4Q9NQC3 1192 aaKnown RBP6.78□□□□□ -1.32
VPS13C-204ENST00000395898 CUX1P39880 1505 aa6.78□□□□□ -1.32
VPS13C-204ENST00000395898 HSP90B1P14625 803 aaKnown RBP6.78□□□□□ -1.32
VPS13C-204ENST00000395898 L3MBTL2Q969R5 705 aa6.78□□□□□ -1.32
VPS13C-204ENST00000395898 CGNL1Q0VF96 1302 aa6.78□□□□□ -1.32
VPS13C-204ENST00000395898 KIF16BQ96L93 1317 aa6.78□□□□□ -1.32
VPS13C-204ENST00000395898 VGFO15240 615 aaPredicted RBP6.77□□□□□ -1.33
VPS13C-204ENST00000395898 SLC4A10Q6U841 1118 aa6.77□□□□□ -1.33
VPS13C-204ENST00000395898 JPH4Q96JJ6 628 aa6.77□□□□□ -1.33
VPS13C-204ENST00000395898 EVC2Q86UK5 1308 aa6.77□□□□□ -1.33
VPS13C-204ENST00000395898 DEKP35659 375 aaKnown RBP6.77□□□□□ -1.33
VPS13C-204ENST00000395898 NGEFQ8N5V2 710 aa6.77□□□□□ -1.33
VPS13C-204ENST00000395898 ATP6V1DQ9Y5K8 247 aa6.77□□□□□ -1.33
VPS13C-204ENST00000395898 IPO9Q96P70 1041 aaKnown RBP6.77□□□□□ -1.33
VPS13C-204ENST00000395898 FHOD3Q2V2M9 1422 aa6.76□□□□□ -1.33
VPS13C-204ENST00000395898 CENPQQ7L2Z9 268 aaPredicted RBP6.76□□□□□ -1.33
VPS13C-204ENST00000395898 MFAP1P55081 439 aaKnown RBP6.76□□□□□ -1.33
VPS13C-204ENST00000395898 GOLGA6L3A6NEY3 463 aa6.76□□□□□ -1.33
VPS13C-204ENST00000395898 GOLGA6L1Q8N7Z2 621 aa6.76□□□□□ -1.33
VPS13C-204ENST00000395898 GZF1Q9H116 711 aaPredicted RBP6.75□□□□□ -1.33
VPS13C-204ENST00000395898 SLKQ9H2G2 1235 aaPredicted RBP6.75□□□□□ -1.33
VPS13C-204ENST00000395898 CCDC9Q9Y3X0 531 aaKnown RBP6.75□□□□□ -1.33
VPS13C-204ENST00000395898 E9PSI1 815 aa6.75□□□□□ -1.33
VPS13C-204ENST00000395898 FRAT2O75474 233 aaPredicted RBP6.75□□□□□ -1.33
VPS13C-204ENST00000395898 DDX11L8A8MPP1 907 aa6.75□□□□□ -1.33
VPS13C-204ENST00000395898 C1orf141Q5JVX7 400 aa6.75□□□□□ -1.33
VPS13C-204ENST00000395898 RASSF8Q8NHQ8 419 aa6.75□□□□□ -1.33
VPS13C-204ENST00000395898 ROCK1Q13464 1354 aa6.75□□□□□ -1.33
VPS13C-204ENST00000395898 FANCD2Q9BXW9 1451 aa6.74□□□□□ -1.33
VPS13C-204ENST00000395898 GTF2E1P29083 439 aaPredicted RBP6.74□□□□□ -1.33
VPS13C-204ENST00000395898 STAC3Q96MF2 364 aa6.74□□□□□ -1.33
VPS13C-204ENST00000395898 SUGP2Q8IX01 1082 aaKnown RBP eCLIP6.74□□□□□ -1.334e-6■■■□□ 17.3
VPS13C-204ENST00000395898 COG3Q96JB2 828 aa6.74□□□□□ -1.33
VPS13C-204ENST00000395898 SF3A1Q15459 793 aaKnown RBP6.74□□□□□ -1.33
VPS13C-204ENST00000395898 CEP89Q96ST8 783 aa6.74□□□□□ -1.33
VPS13C-204ENST00000395898 NEXNQ0ZGT2 675 aa6.74□□□□□ -1.33
VPS13C-204ENST00000395898 TRAK1Q9UPV9 953 aa6.74□□□□□ -1.33
VPS13C-204ENST00000395898 TSR1Q2NL82 804 aaKnown RBP6.73□□□□□ -1.33
VPS13C-204ENST00000395898 ATAD2BQ9ULI0 1458 aa6.73□□□□□ -1.33
VPS13C-204ENST00000395898 CCDC146Q8IYE0 955 aa6.73□□□□□ -1.33
VPS13C-204ENST00000395898 H3BQV1 296 aa6.73□□□□□ -1.33
VPS13C-204ENST00000395898 SKOR2Q2VWA4 1001 aaPredicted RBP6.73□□□□□ -1.33
VPS13C-204ENST00000395898 IFFO2Q5TF58 517 aa6.73□□□□□ -1.33
VPS13C-204ENST00000395898 ST20-MTHFSA0A0A6YYL1 179 aa6.73□□□□□ -1.33
VPS13C-204ENST00000395898 CLUAP1Q96AJ1 413 aa6.73□□□□□ -1.33
VPS13C-204ENST00000395898 NCBP3Q53F19 620 aaKnown RBP6.73□□□□□ -1.33
VPS13C-204ENST00000395898 AMOTL1Q8IY63 956 aa6.72□□□□□ -1.33
VPS13C-204ENST00000395898 FAM184AQ8NB25 1140 aa6.72□□□□□ -1.33
VPS13C-204ENST00000395898 EVA1CP58658 441 aa6.72□□□□□ -1.33
VPS13C-204ENST00000395898 ZBED9Q6R2W3 1325 aa6.72□□□□□ -1.33
VPS13C-204ENST00000395898 GOLGA6L19H0YKK7 550 aa6.72□□□□□ -1.33
VPS13C-204ENST00000395898 PANK3Q9H999 370 aa6.72□□□□□ -1.33
VPS13C-204ENST00000395898 A0A0U1RQG5 324 aaPredicted RBP6.72□□□□□ -1.33
VPS13C-204ENST00000395898 TEFQ10587 303 aa6.72□□□□□ -1.33
VPS13C-204ENST00000395898 CPLX2Q6PUV4 134 aaKnown RBP6.72□□□□□ -1.33
VPS13C-204ENST00000395898 RUFY2Q8WXA3 655 aa6.72□□□□□ -1.33
VPS13C-204ENST00000395898 USP47Q96K76 1375 aa6.72□□□□□ -1.33
VPS13C-204ENST00000395898 TPM3P06753 285 aa6.72□□□□□ -1.33
VPS13C-204ENST00000395898 FAM161AQ3B820 660 aa6.72□□□□□ -1.33
VPS13C-204ENST00000395898 AKAP17AQ02040 695 aaKnown RBP6.72□□□□□ -1.33
VPS13C-204ENST00000395898 TPM2P07951 284 aa6.71□□□□□ -1.33
VPS13C-204ENST00000395898 ZKSCAN2Q63HK3 967 aa6.71□□□□□ -1.33
VPS13C-204ENST00000395898 REC8O95072 547 aa6.71□□□□□ -1.33
VPS13C-204ENST00000395898 ANKRD45Q5TZF3 282 aa6.71□□□□□ -1.33
VPS13C-204ENST00000395898 MYOM3Q5VTT5 1437 aa6.71□□□□□ -1.33
VPS13C-204ENST00000395898 DDX19BQ9UMR2 479 aa6.71□□□□□ -1.34
VPS13C-204ENST00000395898 GAPVD1Q14C86 1478 aa6.71□□□□□ -1.34
VPS13C-204ENST00000395898 SYNE3Q6ZMZ3 975 aa6.71□□□□□ -1.34
VPS13C-204ENST00000395898 MARCH6O60337 910 aa6.71□□□□□ -1.34
VPS13C-204ENST00000395898 TPD52L1Q16890 204 aaPredicted RBP6.71□□□□□ -1.34
VPS13C-204ENST00000395898 RILPL2Q969X0 211 aa6.71□□□□□ -1.34
VPS13C-204ENST00000395898 TPM1P09493 284 aa6.7□□□□□ -1.34
VPS13C-204ENST00000395898 PTPRGP23470 1445 aa6.7□□□□□ -1.34
VPS13C-204ENST00000395898 DDX58O95786 925 aaKnown RBP6.7□□□□□ -1.34
VPS13C-204ENST00000395898 C9orf78Q9NZ63 289 aaPredicted RBP6.7□□□□□ -1.34
VPS13C-204ENST00000395898 MIA2Q96PC5 1412 aa6.7□□□□□ -1.34
VPS13C-204ENST00000395898 TTC5Q8N0Z6 440 aa6.7□□□□□ -1.34
VPS13C-204ENST00000395898 LTV1Q96GA3 475 aaPredicted RBP6.7□□□□□ -1.34
VPS13C-204ENST00000395898 KIF21BO75037 1637 aa6.7□□□□□ -1.34
VPS13C-204ENST00000395898 HOOK1Q9UJC3 728 aaKnown RBP6.7□□□□□ -1.34
VPS13C-204ENST00000395898 ZKSCAN1P17029 563 aaPredicted RBP6.7□□□□□ -1.34
VPS13C-204ENST00000395898 AAMPQ13685 434 aa6.7□□□□□ -1.34
VPS13C-204ENST00000395898 ABCF1Q8NE71 845 aaKnown RBP eCLIP6.7□□□□□ -1.34
VPS13C-204ENST00000395898 NOL10Q9BSC4 688 aaKnown RBP6.69□□□□□ -1.34
VPS13C-204ENST00000395898 TOMM22Q9NS69 142 aa6.69□□□□□ -1.34
VPS13C-204ENST00000395898 CREBRFQ8IUR6 639 aa6.69□□□□□ -1.34
VPS13C-204ENST00000395898 NUTM2DQ5VT03 806 aaPredicted RBP6.69□□□□□ -1.34
VPS13C-204ENST00000395898 RNF20Q5VTR2 975 aa6.69□□□□□ -1.34
VPS13C-204ENST00000395898 CCDC70Q6NSX1 233 aa6.69□□□□□ -1.34
VPS13C-204ENST00000395898 PRKRIP1Q9H875 184 aaPredicted RBP6.69□□□□□ -1.34
VPS13C-204ENST00000395898 TRIM29Q14134 588 aa6.69□□□□□ -1.34
VPS13C-204ENST00000395898 DIAPH3Q9NSV4 1193 aa6.69□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms