RNA–Protein interactions for RNA: ENST00000394299.6

GPC3-202, Transcript of glypican 3, humanhuman

TSL 1 (best) BASIC

Gene GPC3, Length 2,379 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC3-202ENST00000394299 CCDC144AA2RUR9 1427 aa21.02■□□□□ 0.96
GPC3-202ENST00000394299 ERBINQ96RT1 1412 aa21.01■□□□□ 0.95
GPC3-202ENST00000394299 CARD11Q9BXL7 1154 aa21.01■□□□□ 0.95
GPC3-202ENST00000394299 ABCA9Q8IUA7 1624 aa21.01■□□□□ 0.95
GPC3-202ENST00000394299 ARAP3Q8WWN8 1544 aa21■□□□□ 0.95
GPC3-202ENST00000394299 UHRF1BP1Q6BDS2 1440 aa21■□□□□ 0.95
GPC3-202ENST00000394299 ADGRL1O94910 1474 aa20.99■□□□□ 0.95
GPC3-202ENST00000394299 CNTLNQ9NXG0 1405 aa20.98■□□□□ 0.95
GPC3-202ENST00000394299 ZFYVE16Q7Z3T8 1539 aa20.97■□□□□ 0.95
GPC3-202ENST00000394299 IQGAP3Q86VI3 1631 aa20.97■□□□□ 0.95
GPC3-202ENST00000394299 RTEL1-TNFRSF6BF6WH68 1400 aa20.97■□□□□ 0.95
GPC3-202ENST00000394299 KIF3BO15066 747 aa20.96■□□□□ 0.95
GPC3-202ENST00000394299 CNGB1Q14028 1251 aaPredicted RBP20.96■□□□□ 0.95
GPC3-202ENST00000394299 CCDC184Q52MB2 194 aa20.96■□□□□ 0.95
GPC3-202ENST00000394299 NBPF1Q3BBV0 1214 aa20.95■□□□□ 0.94
GPC3-202ENST00000394299 MAGI2Q86UL8 1455 aa20.94■□□□□ 0.94
GPC3-202ENST00000394299 ST20-MTHFSA0A0A6YYL1 179 aa20.94■□□□□ 0.94
GPC3-202ENST00000394299 RALGAPBQ86X10 1494 aa20.93■□□□□ 0.94
GPC3-202ENST00000394299 BCORL1Q5H9F3 1711 aa20.93■□□□□ 0.94
GPC3-202ENST00000394299 ATP7AQ04656 1500 aa20.91■□□□□ 0.94
GPC3-202ENST00000394299 CYB5RLQ6IPT4 315 aa20.91■□□□□ 0.94
GPC3-202ENST00000394299 CD109Q6YHK3 1445 aa20.91■□□□□ 0.94
GPC3-202ENST00000394299 KDM5CP41229 1560 aa20.91■□□□□ 0.94
GPC3-202ENST00000394299 ROCK2O75116 1388 aaKnown RBP20.9■□□□□ 0.94
GPC3-202ENST00000394299 PRKRIP1Q9H875 184 aaPredicted RBP20.9■□□□□ 0.94
GPC3-202ENST00000394299 A2MP01023 1474 aa20.9■□□□□ 0.94
GPC3-202ENST00000394299 PRAG1Q86YV5 1406 aa20.88■□□□□ 0.93
GPC3-202ENST00000394299 INO80Q9ULG1 1556 aaPredicted RBP20.86■□□□□ 0.93
GPC3-202ENST00000394299 DHX29Q7Z478 1369 aaKnown RBP20.86■□□□□ 0.93
GPC3-202ENST00000394299 ATP10AO60312 1499 aa20.84■□□□□ 0.93
GPC3-202ENST00000394299 E9PCH4 1651 aa20.83■□□□□ 0.93
GPC3-202ENST00000394299 RAPGEF3O95398 923 aa20.83■□□□□ 0.93
GPC3-202ENST00000394299 KIDINS220Q9ULH0 1771 aa20.8■□□□□ 0.92
GPC3-202ENST00000394299 KANK1Q14678 1352 aa20.79■□□□□ 0.92
GPC3-202ENST00000394299 POLR1AO95602 1720 aaPredicted RBP20.79■□□□□ 0.92
GPC3-202ENST00000394299 HNRNPUQ00839 825 aaKnown RBP eCLIP20.79■□□□□ 0.928e-7■■□□□ 12.1
GPC3-202ENST00000394299 ZNF518AQ6AHZ1 1483 aa20.78■□□□□ 0.92
GPC3-202ENST00000394299 FAM9BQ8IZU0 186 aa20.78■□□□□ 0.92
GPC3-202ENST00000394299 TRPM1Q7Z4N2 1603 aa20.78■□□□□ 0.92
GPC3-202ENST00000394299 MRS2Q9HD23 443 aa20.78■□□□□ 0.92
GPC3-202ENST00000394299 GGT6Q6P531 493 aa20.77■□□□□ 0.92
GPC3-202ENST00000394299 DEPDC5O75140 1603 aa20.77■□□□□ 0.92
GPC3-202ENST00000394299 SUPT16HQ9Y5B9 1047 aaKnown RBP20.77■□□□□ 0.91
GPC3-202ENST00000394299 PTPRTO14522 1441 aa20.76■□□□□ 0.91
GPC3-202ENST00000394299 POGZQ7Z3K3 1410 aa20.75■□□□□ 0.91
GPC3-202ENST00000394299 ARID4BQ4LE39 1312 aaPredicted RBP20.75■□□□□ 0.91
GPC3-202ENST00000394299 MROH1Q8NDA8 1641 aa20.74■□□□□ 0.91
GPC3-202ENST00000394299 VWDEQ8N2E2 1590 aa20.73■□□□□ 0.91
GPC3-202ENST00000394299 GPRASP1Q5JY77 1395 aa20.72■□□□□ 0.91
GPC3-202ENST00000394299 TRPM2O94759 1503 aa20.72■□□□□ 0.91
GPC3-202ENST00000394299 UGGT1Q9NYU2 1555 aa20.72■□□□□ 0.91
GPC3-202ENST00000394299 CLTCL1P53675 1640 aa20.72■□□□□ 0.91
GPC3-202ENST00000394299 TET3O43151 1660 aa20.71■□□□□ 0.91
GPC3-202ENST00000394299 TESK2Q96S53 571 aa20.71■□□□□ 0.91
GPC3-202ENST00000394299 SPHKAPQ2M3C7 1700 aa20.69■□□□□ 0.9
GPC3-202ENST00000394299 PRDM15P57071 1507 aaPredicted RBP20.69■□□□□ 0.9
GPC3-202ENST00000394299 MLH3Q9UHC1 1453 aa20.67■□□□□ 0.9
GPC3-202ENST00000394299 EIF2AK4Q9P2K8 1649 aaKnown RBP20.67■□□□□ 0.9
GPC3-202ENST00000394299 DISP3Q9P2K9 1392 aa20.67■□□□□ 0.9
GPC3-202ENST00000394299 FRMPD1Q5SYB0 1578 aa20.66■□□□□ 0.9
GPC3-202ENST00000394299 FAM69CQ0P6D2 419 aa20.65■□□□□ 0.9
GPC3-202ENST00000394299 CHGAP10645 457 aaKnown RBP20.65■□□□□ 0.9
GPC3-202ENST00000394299 SENP3-EIF4A1A0A087X0R7 540 aa20.64■□□□□ 0.89
GPC3-202ENST00000394299 FKBP8Q14318 412 aa20.64■□□□□ 0.89
GPC3-202ENST00000394299 RIMBP3CA6NJZ7 1639 aa20.64■□□□□ 0.89
GPC3-202ENST00000394299 RIMBP3BA6NNM3 1639 aa20.64■□□□□ 0.89
GPC3-202ENST00000394299 RIMBP3Q9UFD9 1639 aa20.64■□□□□ 0.89
GPC3-202ENST00000394299 CFAP74Q9C0B2 1584 aa20.63■□□□□ 0.89
GPC3-202ENST00000394299 WASHC2CQ9Y4E1 1318 aa20.63■□□□□ 0.89
GPC3-202ENST00000394299 NEO1Q92859 1461 aa20.63■□□□□ 0.89
GPC3-202ENST00000394299 BCANQ96GW7 911 aa20.63■□□□□ 0.89
GPC3-202ENST00000394299 PPRC1Q5VV67 1664 aaKnown RBP20.62■□□□□ 0.89
GPC3-202ENST00000394299 ADGRF5Q8IZF2 1346 aa20.62■□□□□ 0.89
GPC3-202ENST00000394299 HECW2Q9P2P5 1572 aa20.62■□□□□ 0.89
GPC3-202ENST00000394299 CFAP65Q6ZU64 1925 aaKnown RBP20.62■□□□□ 0.89
GPC3-202ENST00000394299 CEP152O94986 1710 aa20.62■□□□□ 0.89
GPC3-202ENST00000394299 CFAP70Q5T0N1 1121 aa20.61■□□□□ 0.89
GPC3-202ENST00000394299 ABCA6Q8N139 1617 aa20.61■□□□□ 0.89
GPC3-202ENST00000394299 EFCAB6Q5THR3 1501 aa20.61■□□□□ 0.89
GPC3-202ENST00000394299 MADDQ8WXG6 1647 aa20.61■□□□□ 0.89
GPC3-202ENST00000394299 NPATQ14207 1427 aa20.59■□□□□ 0.89
GPC3-202ENST00000394299 YEATS2Q9ULM3 1422 aa20.59■□□□□ 0.89
GPC3-202ENST00000394299 TMF1P82094 1093 aa20.58■□□□□ 0.89
GPC3-202ENST00000394299 PER1O15534 1290 aaPredicted RBP20.58■□□□□ 0.88
GPC3-202ENST00000394299 PANK3Q9H999 370 aa20.57■□□□□ 0.88
GPC3-202ENST00000394299 COL17A1Q9UMD9 1497 aaPredicted RBP20.57■□□□□ 0.88
GPC3-202ENST00000394299 LAMC1P11047 1609 aa20.56■□□□□ 0.88
GPC3-202ENST00000394299 RNF17Q9BXT8 1623 aaKnown RBP20.56■□□□□ 0.88
GPC3-202ENST00000394299 LMTK2Q8IWU2 1503 aa20.56■□□□□ 0.88
GPC3-202ENST00000394299 MAP3K4Q9Y6R4 1608 aa20.55■□□□□ 0.88
GPC3-202ENST00000394299 TMC1Q8TDI8 760 aa20.54■□□□□ 0.88
GPC3-202ENST00000394299 STAC3Q96MF2 364 aa20.54■□□□□ 0.88
GPC3-202ENST00000394299 CC2D1BQ5T0F9 858 aaKnown RBP20.53■□□□□ 0.88
GPC3-202ENST00000394299 NUTM2DQ5VT03 806 aaPredicted RBP20.53■□□□□ 0.88
GPC3-202ENST00000394299 PNISRQ8TF01 805 aaKnown RBP20.52■□□□□ 0.88
GPC3-202ENST00000394299 DIP2CQ9Y2E4 1556 aa20.52■□□□□ 0.88
GPC3-202ENST00000394299 SENP3Q9H4L4 574 aaPredicted RBP20.51■□□□□ 0.87
GPC3-202ENST00000394299 ABCC3O15438 1527 aa20.51■□□□□ 0.87
GPC3-202ENST00000394299 MROH2AA6NES4 1674 aa20.51■□□□□ 0.87
GPC3-202ENST00000394299 RICTORQ6R327 1708 aa20.5■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 8.1 ms