RNA–Protein interactions for RNA: ENST00000392003.6

COL6A3-204, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2 BASIC

Gene COL6A3, Length 3,464 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-204ENST00000392003 PLEKHH2Q8IVE3 1493 aa13.16□□□□□ -0.3
COL6A3-204ENST00000392003 ARID4BQ4LE39 1312 aaPredicted RBP13.16□□□□□ -0.3
COL6A3-204ENST00000392003 DCAF11Q8TEB1 546 aa13.16□□□□□ -0.3
COL6A3-204ENST00000392003 SPAG9O60271 1321 aaKnown RBP13.14□□□□□ -0.31
COL6A3-204ENST00000392003 CDC42BPBQ9Y5S2 1711 aa13.14□□□□□ -0.31
COL6A3-204ENST00000392003 ARHGEF12Q9NZN5 1544 aa13.14□□□□□ -0.31
COL6A3-204ENST00000392003 SHROOM2Q13796 1616 aa13.14□□□□□ -0.31
COL6A3-204ENST00000392003 UHRF1BP1Q6BDS2 1440 aa13.14□□□□□ -0.31
COL6A3-204ENST00000392003 POLR1AO95602 1720 aaPredicted RBP13.13□□□□□ -0.31
COL6A3-204ENST00000392003 SYCP2Q9BX26 1530 aa13.13□□□□□ -0.31
COL6A3-204ENST00000392003 CNGB1Q14028 1251 aaPredicted RBP13.13□□□□□ -0.31
COL6A3-204ENST00000392003 RGL3Q3MIN7 710 aa13.13□□□□□ -0.31
COL6A3-204ENST00000392003 RALGAPBQ86X10 1494 aa13.13□□□□□ -0.31
COL6A3-204ENST00000392003 ROCK2O75116 1388 aaKnown RBP13.13□□□□□ -0.31
COL6A3-204ENST00000392003 AFAP1Q8N556 730 aa13.12□□□□□ -0.31
COL6A3-204ENST00000392003 CLASP1Q7Z460 1538 aa13.12□□□□□ -0.31
COL6A3-204ENST00000392003 CCDC144AA2RUR9 1427 aa13.12□□□□□ -0.31
COL6A3-204ENST00000392003 CCDC184Q52MB2 194 aa13.12□□□□□ -0.31
COL6A3-204ENST00000392003 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP13.11□□□□□ -0.31
COL6A3-204ENST00000392003 FAM135AQ9P2D6 1515 aa13.11□□□□□ -0.31
COL6A3-204ENST00000392003 TTC37Q6PGP7 1564 aa13.1□□□□□ -0.31
COL6A3-204ENST00000392003 PLCH2O75038 1416 aa13.1□□□□□ -0.31
COL6A3-204ENST00000392003 MYO5CQ9NQX4 1742 aa13.1□□□□□ -0.31
COL6A3-204ENST00000392003 RTN4Q9NQC3 1192 aaKnown RBP13.09□□□□□ -0.31
COL6A3-204ENST00000392003 MAST1Q9Y2H9 1570 aa13.09□□□□□ -0.31
COL6A3-204ENST00000392003 UHRF1BP1LA0JNW5 1464 aa13.09□□□□□ -0.31
COL6A3-204ENST00000392003 DEKP35659 375 aaKnown RBP13.08□□□□□ -0.31
COL6A3-204ENST00000392003 KDM5CP41229 1560 aa13.08□□□□□ -0.31
COL6A3-204ENST00000392003 ST20-MTHFSA0A0A6YYL1 179 aa13.08□□□□□ -0.32
COL6A3-204ENST00000392003 MSH5O43196 834 aa13.07□□□□□ -0.32
COL6A3-204ENST00000392003 ZBED9Q6R2W3 1325 aa13.07□□□□□ -0.32
COL6A3-204ENST00000392003 CYB5RLQ6IPT4 315 aa13.05□□□□□ -0.32
COL6A3-204ENST00000392003 DUOX2Q9NRD8 1548 aa13.05□□□□□ -0.32
COL6A3-204ENST00000392003 TMC1Q8TDI8 760 aa13.05□□□□□ -0.32
COL6A3-204ENST00000392003 BCORL1Q5H9F3 1711 aa13.05□□□□□ -0.32
COL6A3-204ENST00000392003 DHX29Q7Z478 1369 aaKnown RBP13.04□□□□□ -0.32
COL6A3-204ENST00000392003 KIF3BO15066 747 aa13.04□□□□□ -0.32
COL6A3-204ENST00000392003 ERICH6BQ5W0A0 696 aa13.04□□□□□ -0.32
COL6A3-204ENST00000392003 PLXNC1O60486 1568 aa13.04□□□□□ -0.32
COL6A3-204ENST00000392003 WDR7Q9Y4E6 1490 aa13.04□□□□□ -0.32
COL6A3-204ENST00000392003 UNC13BO14795 1591 aa13.04□□□□□ -0.32
COL6A3-204ENST00000392003 ZCCHC11Q5TAX3 1644 aaKnown RBP13.04□□□□□ -0.32
COL6A3-204ENST00000392003 IRX6P78412 446 aaPredicted RBP13.03□□□□□ -0.32
COL6A3-204ENST00000392003 ASXL2Q76L83 1435 aa13.03□□□□□ -0.32
COL6A3-204ENST00000392003 ERBINQ96RT1 1412 aa13.02□□□□□ -0.32
COL6A3-204ENST00000392003 TRAPPC8Q9Y2L5 1435 aa13.02□□□□□ -0.32
COL6A3-204ENST00000392003 SCAPERQ9BY12 1400 aa13.01□□□□□ -0.33
COL6A3-204ENST00000392003 PRAG1Q86YV5 1406 aa13.01□□□□□ -0.33
COL6A3-204ENST00000392003 KANK1Q14678 1352 aa13□□□□□ -0.33
COL6A3-204ENST00000392003 RALBP1Q15311 655 aa13□□□□□ -0.33
COL6A3-204ENST00000392003 FANCAO15360 1455 aa13□□□□□ -0.33
COL6A3-204ENST00000392003 IQGAP3Q86VI3 1631 aa13□□□□□ -0.33
COL6A3-204ENST00000392003 KTN1Q86UP2 1357 aaKnown RBP13□□□□□ -0.33
COL6A3-204ENST00000392003 IL27Q8NEV9 243 aa13□□□□□ -0.33
COL6A3-204ENST00000392003 PPP4R2Q9NY27 417 aa12.98□□□□□ -0.33
COL6A3-204ENST00000392003 ABCC1P33527 1531 aa12.98□□□□□ -0.33
COL6A3-204ENST00000392003 PLA2R1Q13018 1463 aa12.97□□□□□ -0.33
COL6A3-204ENST00000392003 NBPF1Q3BBV0 1214 aa12.97□□□□□ -0.33
COL6A3-204ENST00000392003 MYBBP1AQ9BQG0 1328 aaKnown RBP12.97□□□□□ -0.33
COL6A3-204ENST00000392003 ADGRL1O94910 1474 aa12.97□□□□□ -0.33
COL6A3-204ENST00000392003 A2MP01023 1474 aa12.97□□□□□ -0.33
COL6A3-204ENST00000392003 A0A0U1RQG5 324 aaPredicted RBP12.96□□□□□ -0.33
COL6A3-204ENST00000392003 CHGAP10645 457 aaKnown RBP12.96□□□□□ -0.33
COL6A3-204ENST00000392003 GGT6Q6P531 493 aa12.96□□□□□ -0.33
COL6A3-204ENST00000392003 TRPM1Q7Z4N2 1603 aa12.95□□□□□ -0.34
COL6A3-204ENST00000392003 RTEL1-TNFRSF6BF6WH68 1400 aa12.95□□□□□ -0.34
COL6A3-204ENST00000392003 CD109Q6YHK3 1445 aa12.95□□□□□ -0.34
COL6A3-204ENST00000392003 BRD4O60885 1362 aaPredicted RBP12.95□□□□□ -0.34
COL6A3-204ENST00000392003 EIF2AK4Q9P2K8 1649 aaKnown RBP12.95□□□□□ -0.34
COL6A3-204ENST00000392003 TMF1P82094 1093 aa12.95□□□□□ -0.34
COL6A3-204ENST00000392003 RBM19Q9Y4C8 960 aaKnown RBP12.95□□□□□ -0.34
COL6A3-204ENST00000392003 GPRASP1Q5JY77 1395 aa12.95□□□□□ -0.34
COL6A3-204ENST00000392003 PNISRQ8TF01 805 aaKnown RBP12.94□□□□□ -0.34
COL6A3-204ENST00000392003 ATP10AO60312 1499 aa12.94□□□□□ -0.34
COL6A3-204ENST00000392003 MAGI2Q86UL8 1455 aa12.94□□□□□ -0.34
COL6A3-204ENST00000392003 ARAP3Q8WWN8 1544 aa12.94□□□□□ -0.34
COL6A3-204ENST00000392003 NUDCQ9Y266 331 aa12.93□□□□□ -0.34
COL6A3-204ENST00000392003 STAC3Q96MF2 364 aa12.92□□□□□ -0.34
COL6A3-204ENST00000392003 SMG6Q86US8 1419 aaKnown RBP12.92□□□□□ -0.34
COL6A3-204ENST00000392003 NLRP13Q86W25 1043 aa12.92□□□□□ -0.34
COL6A3-204ENST00000392003 KLHL34Q8N239 644 aa12.92□□□□□ -0.34
COL6A3-204ENST00000392003 RAPGEF3O95398 923 aa12.9□□□□□ -0.34
COL6A3-204ENST00000392003 LAMC1P11047 1609 aa12.9□□□□□ -0.34
COL6A3-204ENST00000392003 WASHC2CQ9Y4E1 1318 aa12.89□□□□□ -0.35
COL6A3-204ENST00000392003 PRDM15P57071 1507 aaPredicted RBP12.89□□□□□ -0.35
COL6A3-204ENST00000392003 COL17A1Q9UMD9 1497 aaPredicted RBP12.89□□□□□ -0.35
COL6A3-204ENST00000392003 FAM69CQ0P6D2 419 aa12.89□□□□□ -0.35
COL6A3-204ENST00000392003 CDCA8Q53HL2 280 aa12.89□□□□□ -0.35
COL6A3-204ENST00000392003 ZFYVE16Q7Z3T8 1539 aa12.88□□□□□ -0.35
COL6A3-204ENST00000392003 TESK2Q96S53 571 aa12.88□□□□□ -0.35
COL6A3-204ENST00000392003 PANK3Q9H999 370 aa12.87□□□□□ -0.35
COL6A3-204ENST00000392003 CC2D1BQ5T0F9 858 aaKnown RBP12.87□□□□□ -0.35
COL6A3-204ENST00000392003 ATP7AQ04656 1500 aa12.87□□□□□ -0.35
COL6A3-204ENST00000392003 E9PCH4 1651 aa12.86□□□□□ -0.35
COL6A3-204ENST00000392003 DISP3Q9P2K9 1392 aa12.86□□□□□ -0.35
COL6A3-204ENST00000392003 SENP3-EIF4A1A0A087X0R7 540 aa12.86□□□□□ -0.35
COL6A3-204ENST00000392003 B4GALNT3Q6L9W6 998 aa12.86□□□□□ -0.35
COL6A3-204ENST00000392003 LRPPRCP42704 1394 aaKnown RBP12.86□□□□□ -0.35
COL6A3-204ENST00000392003 PARD3Q8TEW0 1356 aa12.86□□□□□ -0.35
COL6A3-204ENST00000392003 PDE4CQ08493 712 aa12.86□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms