RNA–Protein interactions for RNA: ENST00000389805.8

SQSTM1-202, Transcript of sequestosome 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SQSTM1, Length 2,986 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-202ENST00000389805 SENP3-EIF4A1A0A087X0R7 540 aa23.94■■□□□ 1.42
SQSTM1-202ENST00000389805 RTN4Q9NQC3 1192 aaKnown RBP23.93■■□□□ 1.42
SQSTM1-202ENST00000389805 BCORL1Q5H9F3 1711 aa23.93■■□□□ 1.42
SQSTM1-202ENST00000389805 RGL3Q3MIN7 710 aa23.93■■□□□ 1.42
SQSTM1-202ENST00000389805 PREX2Q70Z35 1606 aa23.93■■□□□ 1.42
SQSTM1-202ENST00000389805 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP23.92■■□□□ 1.426e-7■■■■□ 21.5
SQSTM1-202ENST00000389805 RTL5Q5HYW3 569 aaPredicted RBP23.92■■□□□ 1.42
SQSTM1-202ENST00000389805 RSPH4AQ5TD94 716 aa23.91■■□□□ 1.42
SQSTM1-202ENST00000389805 SHROOM2Q13796 1616 aa23.9■■□□□ 1.42
SQSTM1-202ENST00000389805 ST20-MTHFSA0A0A6YYL1 179 aa23.9■■□□□ 1.42
SQSTM1-202ENST00000389805 IL27Q8NEV9 243 aa23.89■■□□□ 1.41
SQSTM1-202ENST00000389805 KDM5DQ9BY66 1539 aa23.88■■□□□ 1.41
SQSTM1-202ENST00000389805 ANP32AP39687 249 aaKnown RBP23.88■■□□□ 1.41
SQSTM1-202ENST00000389805 FAM135AQ9P2D6 1515 aa23.87■■□□□ 1.41
SQSTM1-202ENST00000389805 DHX29Q7Z478 1369 aaKnown RBP23.87■■□□□ 1.41
SQSTM1-202ENST00000389805 CCDC136Q96JN2 1154 aa23.87■■□□□ 1.41
SQSTM1-202ENST00000389805 UHRF1BP1Q6BDS2 1440 aa23.87■■□□□ 1.41
SQSTM1-202ENST00000389805 ABCC2Q92887 1545 aa23.86■■□□□ 1.41
SQSTM1-202ENST00000389805 KDM5CP41229 1560 aa23.86■■□□□ 1.41
SQSTM1-202ENST00000389805 ZBTB47Q9UFB7 747 aaPredicted RBP23.85■■□□□ 1.41
SQSTM1-202ENST00000389805 IPO9Q96P70 1041 aaKnown RBP23.85■■□□□ 1.41
SQSTM1-202ENST00000389805 PLEKHH2Q8IVE3 1493 aa23.84■■□□□ 1.41
SQSTM1-202ENST00000389805 ZBED9Q6R2W3 1325 aa23.83■■□□□ 1.41
SQSTM1-202ENST00000389805 RALGAPBQ86X10 1494 aa23.83■■□□□ 1.41
SQSTM1-202ENST00000389805 ARHGEF12Q9NZN5 1544 aa23.83■■□□□ 1.41
SQSTM1-202ENST00000389805 POLR1AO95602 1720 aaPredicted RBP23.82■■□□□ 1.4
SQSTM1-202ENST00000389805 NBPF1Q3BBV0 1214 aa23.81■■□□□ 1.4
SQSTM1-202ENST00000389805 CCDC144AA2RUR9 1427 aa23.8■■□□□ 1.4
SQSTM1-202ENST00000389805 ROCK2O75116 1388 aaKnown RBP23.79■■□□□ 1.4
SQSTM1-202ENST00000389805 PLA2R1Q13018 1463 aa23.79■■□□□ 1.4
SQSTM1-202ENST00000389805 NPM2Q86SE8 214 aaKnown RBP23.79■■□□□ 1.4
SQSTM1-202ENST00000389805 EFCAB2Q5VUJ9 269 aa23.76■■□□□ 1.39
SQSTM1-202ENST00000389805 AFAP1Q8N556 730 aa23.74■■□□□ 1.39
SQSTM1-202ENST00000389805 MYO5CQ9NQX4 1742 aa23.74■■□□□ 1.39
SQSTM1-202ENST00000389805 PLCH2O75038 1416 aa23.74■■□□□ 1.39
SQSTM1-202ENST00000389805 ZBTB4Q9P1Z0 1013 aaPredicted RBP23.74■■□□□ 1.39
SQSTM1-202ENST00000389805 ARID4BQ4LE39 1312 aaPredicted RBP23.73■■□□□ 1.39
SQSTM1-202ENST00000389805 TRAPPC8Q9Y2L5 1435 aa23.73■■□□□ 1.39
SQSTM1-202ENST00000389805 ZCCHC11Q5TAX3 1644 aaKnown RBP23.71■■□□□ 1.39
SQSTM1-202ENST00000389805 LAS1LQ9Y4W2 734 aaKnown RBP23.71■■□□□ 1.39
SQSTM1-202ENST00000389805 MAST1Q9Y2H9 1570 aa23.7■■□□□ 1.38
SQSTM1-202ENST00000389805 PRAG1Q86YV5 1406 aa23.7■■□□□ 1.38
SQSTM1-202ENST00000389805 CLASP1Q7Z460 1538 aa23.69■■□□□ 1.38
SQSTM1-202ENST00000389805 A2MP01023 1474 aa23.67■■□□□ 1.38
SQSTM1-202ENST00000389805 UNC13BO14795 1591 aa23.67■■□□□ 1.38
SQSTM1-202ENST00000389805 TMC1Q8TDI8 760 aa23.67■■□□□ 1.38
SQSTM1-202ENST00000389805 DUOX2Q9NRD8 1548 aa23.64■■□□□ 1.38
SQSTM1-202ENST00000389805 PNISRQ8TF01 805 aaKnown RBP23.64■■□□□ 1.37
SQSTM1-202ENST00000389805 SPAG9O60271 1321 aaKnown RBP23.64■■□□□ 1.37
SQSTM1-202ENST00000389805 PLXNC1O60486 1568 aa23.63■■□□□ 1.37
SQSTM1-202ENST00000389805 NEFMP07197 916 aa23.62■■□□□ 1.37
SQSTM1-202ENST00000389805 NUDCQ9Y266 331 aa23.62■■□□□ 1.37
SQSTM1-202ENST00000389805 UHRF1BP1LA0JNW5 1464 aa23.62■■□□□ 1.37
SQSTM1-202ENST00000389805 IQGAP3Q86VI3 1631 aa23.6■■□□□ 1.37
SQSTM1-202ENST00000389805 TRPM1Q7Z4N2 1603 aa23.59■■□□□ 1.37
SQSTM1-202ENST00000389805 ABCC1P33527 1531 aa23.59■■□□□ 1.37
SQSTM1-202ENST00000389805 ERBINQ96RT1 1412 aa23.59■■□□□ 1.37
SQSTM1-202ENST00000389805 SMG6Q86US8 1419 aaKnown RBP23.58■■□□□ 1.36
SQSTM1-202ENST00000389805 TESK2Q96S53 571 aa23.57■■□□□ 1.36
SQSTM1-202ENST00000389805 DISP3Q9P2K9 1392 aa23.55■■□□□ 1.36
SQSTM1-202ENST00000389805 MYBBP1AQ9BQG0 1328 aaKnown RBP23.54■■□□□ 1.36
SQSTM1-202ENST00000389805 MAGI2Q86UL8 1455 aa23.54■■□□□ 1.36
SQSTM1-202ENST00000389805 GPRASP1Q5JY77 1395 aa23.53■■□□□ 1.36
SQSTM1-202ENST00000389805 PER1O15534 1290 aaPredicted RBP23.52■■□□□ 1.36
SQSTM1-202ENST00000389805 RALBP1Q15311 655 aa23.52■■□□□ 1.36
SQSTM1-202ENST00000389805 CC2D1BQ5T0F9 858 aaKnown RBP23.52■■□□□ 1.36
SQSTM1-202ENST00000389805 KIF3BO15066 747 aa23.5■■□□□ 1.35
SQSTM1-202ENST00000389805 ATP10AO60312 1499 aa23.49■■□□□ 1.35
SQSTM1-202ENST00000389805 RNF123Q5XPI4 1314 aa23.49■■□□□ 1.35
SQSTM1-202ENST00000389805 PANK3Q9H999 370 aa23.49■■□□□ 1.35
SQSTM1-202ENST00000389805 WDR7Q9Y4E6 1490 aa23.48■■□□□ 1.35
SQSTM1-202ENST00000389805 SCAPERQ9BY12 1400 aa23.47■■□□□ 1.35
SQSTM1-202ENST00000389805 FANCAO15360 1455 aa23.47■■□□□ 1.35
SQSTM1-202ENST00000389805 BRD4O60885 1362 aaPredicted RBP23.46■■□□□ 1.35
SQSTM1-202ENST00000389805 EXOC6Q8TAG9 804 aa23.46■■□□□ 1.35
SQSTM1-202ENST00000389805 ZFYVE16Q7Z3T8 1539 aa23.45■■□□□ 1.34
SQSTM1-202ENST00000389805 PDE4AP27815 886 aa23.45■■□□□ 1.34
SQSTM1-202ENST00000389805 BRPF3Q9ULD4 1205 aa23.45■■□□□ 1.34
SQSTM1-202ENST00000389805 KTN1Q86UP2 1357 aaKnown RBP23.45■■□□□ 1.34
SQSTM1-202ENST00000389805 PRDM15P57071 1507 aaPredicted RBP23.44■■□□□ 1.34
SQSTM1-202ENST00000389805 E9PCH4 1651 aa23.44■■□□□ 1.34
SQSTM1-202ENST00000389805 TMF1P82094 1093 aa23.44■■□□□ 1.34
SQSTM1-202ENST00000389805 RTEL1-TNFRSF6BF6WH68 1400 aa23.44■■□□□ 1.34
SQSTM1-202ENST00000389805 COL17A1Q9UMD9 1497 aaPredicted RBP23.43■■□□□ 1.34
SQSTM1-202ENST00000389805 LRPPRCP42704 1394 aaKnown RBP23.43■■□□□ 1.34
SQSTM1-202ENST00000389805 NLRP13Q86W25 1043 aa23.43■■□□□ 1.34
SQSTM1-202ENST00000389805 PARD3Q8TEW0 1356 aa23.42■■□□□ 1.34
SQSTM1-202ENST00000389805 SKAP1Q86WV1 359 aa23.4■■□□□ 1.34
SQSTM1-202ENST00000389805 ASXL2Q76L83 1435 aa23.39■■□□□ 1.34
SQSTM1-202ENST00000389805 ADGRL1O94910 1474 aa23.39■■□□□ 1.33
SQSTM1-202ENST00000389805 EIF5BO60841 1220 aaKnown RBP23.37■■□□□ 1.33
SQSTM1-202ENST00000389805 ATP7AQ04656 1500 aa23.37■■□□□ 1.33
SQSTM1-202ENST00000389805 ARAP3Q8WWN8 1544 aa23.36■■□□□ 1.33
SQSTM1-202ENST00000389805 TCERG1O14776 1098 aaKnown RBP23.36■■□□□ 1.33
SQSTM1-202ENST00000389805 USP35Q9P2H5 1018 aa23.36■■□□□ 1.33
SQSTM1-202ENST00000389805 EIF2AK4Q9P2K8 1649 aaKnown RBP23.36■■□□□ 1.33
SQSTM1-202ENST00000389805 BACH2Q9BYV9 841 aa23.35■■□□□ 1.33
SQSTM1-202ENST00000389805 PTPRTO14522 1441 aa23.35■■□□□ 1.33
SQSTM1-202ENST00000389805 RRP1P56182 461 aaKnown RBP23.34■■□□□ 1.33
SQSTM1-202ENST00000389805 KANK1Q14678 1352 aa23.34■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms