RNA–Protein interactions for RNA: ENST00000389589.8

SHOX2-201, Transcript of short stature homeobox 2, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SHOX2, Length 2,072 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2-201ENST00000389589 CYB5RLQ6IPT4 315 aa35.55■■■■□ 3.28
SHOX2-201ENST00000389589 ATP10AO60312 1499 aa35.54■■■■□ 3.28
SHOX2-201ENST00000389589 NEO1Q92859 1461 aa35.54■■■■□ 3.28
SHOX2-201ENST00000389589 UHRF1BP1Q6BDS2 1440 aa35.54■■■■□ 3.28
SHOX2-201ENST00000389589 KDM5CP41229 1560 aa35.53■■■■□ 3.28
SHOX2-201ENST00000389589 CENPBP07199 599 aaPredicted RBP35.53■■■■□ 3.28
SHOX2-201ENST00000389589 DHX29Q7Z478 1369 aaKnown RBP35.52■■■■□ 3.28
SHOX2-201ENST00000389589 POGZQ7Z3K3 1410 aa35.52■■■■□ 3.28
SHOX2-201ENST00000389589 MYT1LQ9UL68 1186 aa35.51■■■■□ 3.28
SHOX2-201ENST00000389589 PLA2R1Q13018 1463 aa35.51■■■■□ 3.27
SHOX2-201ENST00000389589 MAP3K4Q9Y6R4 1608 aa35.5■■■■□ 3.27
SHOX2-201ENST00000389589 GLI2P10070 1586 aa35.49■■■■□ 3.27
SHOX2-201ENST00000389589 TET3O43151 1660 aa35.46■■■■□ 3.27
SHOX2-201ENST00000389589 VWDEQ8N2E2 1590 aa35.46■■■■□ 3.27
SHOX2-201ENST00000389589 E9PCH4 1651 aa35.45■■■■□ 3.27
SHOX2-201ENST00000389589 MLH3Q9UHC1 1453 aa35.45■■■■□ 3.27
SHOX2-201ENST00000389589 KANK1Q14678 1352 aa35.45■■■■□ 3.26
SHOX2-201ENST00000389589 HECW2Q9P2P5 1572 aa35.44■■■■□ 3.26
SHOX2-201ENST00000389589 PRDM15P57071 1507 aaPredicted RBP35.43■■■■□ 3.26
SHOX2-201ENST00000389589 SPATA31E1Q6ZUB1 1445 aa35.42■■■■□ 3.26
SHOX2-201ENST00000389589 RALGAPBQ86X10 1494 aa35.41■■■■□ 3.26
SHOX2-201ENST00000389589 POLR1AO95602 1720 aaPredicted RBP35.4■■■■□ 3.26
SHOX2-201ENST00000389589 A2MP01023 1474 aa35.37■■■■□ 3.25
SHOX2-201ENST00000389589 MROH1Q8NDA8 1641 aa35.37■■■■□ 3.25
SHOX2-201ENST00000389589 KIF3BO15066 747 aa35.37■■■■□ 3.25
SHOX2-201ENST00000389589 SPHKAPQ2M3C7 1700 aa35.37■■■■□ 3.25
SHOX2-201ENST00000389589 ZNF326Q5BKZ1 582 aaKnown RBP35.35■■■■□ 3.25
SHOX2-201ENST00000389589 DCAF11Q8TEB1 546 aa35.34■■■■□ 3.25
SHOX2-201ENST00000389589 RNF17Q9BXT8 1623 aaKnown RBP35.34■■■■□ 3.25
SHOX2-201ENST00000389589 TRPM2O94759 1503 aa35.33■■■■□ 3.25
SHOX2-201ENST00000389589 WASHC2AQ641Q2 1341 aa35.33■■■■□ 3.25
SHOX2-201ENST00000389589 YTHDC1Q96MU7 727 aaKnown RBP35.33■■■■□ 3.25
SHOX2-201ENST00000389589 BCORL1Q5H9F3 1711 aa35.31■■■■□ 3.24
SHOX2-201ENST00000389589 PTPRTO14522 1441 aa35.3■■■■□ 3.24
SHOX2-201ENST00000389589 RICTORQ6R327 1708 aa35.3■■■■□ 3.24
SHOX2-201ENST00000389589 DIP2BQ9P265 1576 aa35.29■■■■□ 3.24
SHOX2-201ENST00000389589 ABCA6Q8N139 1617 aa35.28■■■■□ 3.24
SHOX2-201ENST00000389589 KDM2AQ9Y2K7 1162 aa35.28■■■■□ 3.24
SHOX2-201ENST00000389589 CEP152O94986 1710 aa35.27■■■■□ 3.24
SHOX2-201ENST00000389589 USP47Q96K76 1375 aa35.27■■■■□ 3.24
SHOX2-201ENST00000389589 FRMPD1Q5SYB0 1578 aa35.25■■■■□ 3.23
SHOX2-201ENST00000389589 CCDC7Q96M83 1385 aa35.25■■■■□ 3.23
SHOX2-201ENST00000389589 ANP32CO43423 234 aa35.25■■■■□ 3.23
SHOX2-201ENST00000389589 PRAG1Q86YV5 1406 aa35.25■■■■□ 3.23
SHOX2-201ENST00000389589 TRPM1Q7Z4N2 1603 aa35.24■■■■□ 3.23
SHOX2-201ENST00000389589 LMTK2Q8IWU2 1503 aa35.24■■■■□ 3.23
SHOX2-201ENST00000389589 EFCAB6Q5THR3 1501 aa35.21■■■■□ 3.23
SHOX2-201ENST00000389589 RGL3Q3MIN7 710 aa35.2■■■■□ 3.23
SHOX2-201ENST00000389589 CLTCL1P53675 1640 aa35.18■■■■□ 3.22
SHOX2-201ENST00000389589 CARD11Q9BXL7 1154 aa35.18■■■■□ 3.22
SHOX2-201ENST00000389589 RAPGEF3O95398 923 aa35.17■■■■□ 3.22
SHOX2-201ENST00000389589 FAM69CQ0P6D2 419 aa35.17■■■■□ 3.22
SHOX2-201ENST00000389589 DIP2CQ9Y2E4 1556 aa35.17■■■■□ 3.22
SHOX2-201ENST00000389589 C11orf95C9JLR9 678 aaPredicted RBP35.16■■■■□ 3.22
SHOX2-201ENST00000389589 CNTLNQ9NXG0 1405 aa35.16■■■■□ 3.22
SHOX2-201ENST00000389589 PPRC1Q5VV67 1664 aaKnown RBP35.15■■■■□ 3.22
SHOX2-201ENST00000389589 CCER2I3L3R5 266 aa35.15■■■■□ 3.22
SHOX2-201ENST00000389589 LAMC1P11047 1609 aa35.15■■■■□ 3.22
SHOX2-201ENST00000389589 NEURL4Q96JN8 1562 aa35.14■■■■□ 3.22
SHOX2-201ENST00000389589 ROCK2O75116 1388 aaKnown RBP35.13■■■■□ 3.21
SHOX2-201ENST00000389589 KIF7Q2M1P5 1343 aa35.11■■■■□ 3.21
SHOX2-201ENST00000389589 ARID4BQ4LE39 1312 aaPredicted RBP35.11■■■■□ 3.21
SHOX2-201ENST00000389589 STAC3Q96MF2 364 aa35.09■■■■□ 3.21
SHOX2-201ENST00000389589 TSPOAP1O95153 1857 aa35.09■■■■□ 3.21
SHOX2-201ENST00000389589 GPRASP1Q5JY77 1395 aa35.08■■■■□ 3.21
SHOX2-201ENST00000389589 ZMYM4Q5VZL5 1548 aa35.07■■■■□ 3.21
SHOX2-201ENST00000389589 KIF1BO60333 1816 aa35.06■■■■□ 3.2
SHOX2-201ENST00000389589 MADDQ8WXG6 1647 aa35.01■■■■□ 3.19
SHOX2-201ENST00000389589 ABCC3O15438 1527 aa35.01■■■■□ 3.19
SHOX2-201ENST00000389589 GGT6Q6P531 493 aa34.99■■■■□ 3.19
SHOX2-201ENST00000389589 KIF13AQ9H1H9 1805 aa34.98■■■■□ 3.19
SHOX2-201ENST00000389589 ZC3H13Q5T200 1668 aaKnown RBP34.98■■■■□ 3.19
SHOX2-201ENST00000389589 CAMSAP1Q5T5Y3 1602 aa34.97■■■■□ 3.19
SHOX2-201ENST00000389589 YEATS2Q9ULM3 1422 aa34.96■■■■□ 3.19
SHOX2-201ENST00000389589 ST20-MTHFSA0A0A6YYL1 179 aa34.94■■■■□ 3.18
SHOX2-201ENST00000389589 NPATQ14207 1427 aa34.94■■■■□ 3.18
SHOX2-201ENST00000389589 SCAF1Q9H7N4 1312 aaKnown RBP34.94■■■■□ 3.18
SHOX2-201ENST00000389589 WASHC2CQ9Y4E1 1318 aa34.94■■■■□ 3.18
SHOX2-201ENST00000389589 NBPF1Q3BBV0 1214 aa34.93■■■■□ 3.18
SHOX2-201ENST00000389589 UGGT1Q9NYU2 1555 aa34.91■■■■□ 3.18
SHOX2-201ENST00000389589 CFAP65Q6ZU64 1925 aaKnown RBP34.9■■■■□ 3.18
SHOX2-201ENST00000389589 KIAA1210Q9ULL0 1709 aa34.9■■■■□ 3.18
SHOX2-201ENST00000389589 IFT172Q9UG01 1749 aa34.89■■■■□ 3.18
SHOX2-201ENST00000389589 MROH2AA6NES4 1674 aa34.86■■■■□ 3.17
SHOX2-201ENST00000389589 REREQ9P2R6 1566 aa34.86■■■■□ 3.17
SHOX2-201ENST00000389589 MYOM2P54296 1465 aa34.86■■■■□ 3.17
SHOX2-201ENST00000389589 ADGRB3O60242 1522 aa34.84■■■■□ 3.17
SHOX2-201ENST00000389589 ARHGAP31Q2M1Z3 1444 aa34.83■■■■□ 3.17
SHOX2-201ENST00000389589 IQGAP1P46940 1657 aa34.82■■■■□ 3.16
SHOX2-201ENST00000389589 SIGLEC1Q9BZZ2 1709 aa34.8■■■■□ 3.16
SHOX2-201ENST00000389589 NOS1P29475 1434 aa34.79■■■■□ 3.16
SHOX2-201ENST00000389589 PRKRIP1Q9H875 184 aaPredicted RBP34.78■■■■□ 3.16
SHOX2-201ENST00000389589 POLR3GLQ9BT43 218 aa34.78■■■■□ 3.16
SHOX2-201ENST00000389589 AGLP35573 1532 aa34.76■■■■□ 3.15
SHOX2-201ENST00000389589 PIK3C2BO00750 1634 aa34.76■■■■□ 3.15
SHOX2-201ENST00000389589 GTF3C3Q9Y5Q9 886 aa34.74■■■■□ 3.15
SHOX2-201ENST00000389589 PPLO60437 1756 aa34.73■■■■□ 3.15
SHOX2-201ENST00000389589 COL17A1Q9UMD9 1497 aaPredicted RBP34.73■■■■□ 3.15
SHOX2-201ENST00000389589 NRXN1Q9ULB1 1477 aa34.72■■■■□ 3.15
SHOX2-201ENST00000389589 SYNMO15061 1565 aa34.71■■■■□ 3.15
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms