RNA–Protein interactions for RNA: ENST00000381150.5

SDC1-202, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 5 BASIC

Gene SDC1, Length 3,291 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-202ENST00000381150 POLR1AO95602 1720 aaPredicted RBP18.71■□□□□ 0.59
SDC1-202ENST00000381150 ABCC2Q92887 1545 aa18.71■□□□□ 0.59
SDC1-202ENST00000381150 NUP155O75694 1391 aa18.7■□□□□ 0.58
SDC1-202ENST00000381150 IPO9Q96P70 1041 aaKnown RBP18.69■□□□□ 0.58
SDC1-202ENST00000381150 CCDC141Q6ZP82 1450 aa18.69■□□□□ 0.58
SDC1-202ENST00000381150 KIF15Q9NS87 1388 aa18.69■□□□□ 0.58
SDC1-202ENST00000381150 CNTLNQ9NXG0 1405 aa18.69■□□□□ 0.58
SDC1-202ENST00000381150 ZNF326Q5BKZ1 582 aaKnown RBP18.69■□□□□ 0.58
SDC1-202ENST00000381150 NEFMP07197 916 aa18.68■□□□□ 0.58
SDC1-202ENST00000381150 CLASP1Q7Z460 1538 aa18.68■□□□□ 0.58
SDC1-202ENST00000381150 RSPH4AQ5TD94 716 aa18.67■□□□□ 0.58
SDC1-202ENST00000381150 MAST1Q9Y2H9 1570 aa18.65■□□□□ 0.58
SDC1-202ENST00000381150 UHRF1BP1Q6BDS2 1440 aa18.64■□□□□ 0.57
SDC1-202ENST00000381150 SYCP2Q9BX26 1530 aa18.64■□□□□ 0.57
SDC1-202ENST00000381150 ERICH6BQ5W0A0 696 aa18.64■□□□□ 0.57
SDC1-202ENST00000381150 PRKRIP1Q9H875 184 aaPredicted RBP18.63■□□□□ 0.57
SDC1-202ENST00000381150 KIF7Q2M1P5 1343 aa18.63■□□□□ 0.57
SDC1-202ENST00000381150 MYO5CQ9NQX4 1742 aa18.62■□□□□ 0.57
SDC1-202ENST00000381150 ARHGAP5Q13017 1502 aa18.61■□□□□ 0.57
SDC1-202ENST00000381150 BCORL1Q5H9F3 1711 aa18.61■□□□□ 0.57
SDC1-202ENST00000381150 UHRF1BP1LA0JNW5 1464 aa18.6■□□□□ 0.57
SDC1-202ENST00000381150 ARHGEF12Q9NZN5 1544 aa18.6■□□□□ 0.57
SDC1-202ENST00000381150 KDM5CP41229 1560 aa18.6■□□□□ 0.57
SDC1-202ENST00000381150 FAM135AQ9P2D6 1515 aa18.6■□□□□ 0.57
SDC1-202ENST00000381150 ZCCHC11Q5TAX3 1644 aaKnown RBP18.59■□□□□ 0.57
SDC1-202ENST00000381150 UNC13BO14795 1591 aa18.58■□□□□ 0.56
SDC1-202ENST00000381150 PLXNC1O60486 1568 aa18.57■□□□□ 0.56
SDC1-202ENST00000381150 RALGAPBQ86X10 1494 aa18.56■□□□□ 0.56
SDC1-202ENST00000381150 USP47Q96K76 1375 aa18.56■□□□□ 0.56
SDC1-202ENST00000381150 ZBED9Q6R2W3 1325 aa18.56■□□□□ 0.56
SDC1-202ENST00000381150 PLCH2O75038 1416 aa18.55■□□□□ 0.56
SDC1-202ENST00000381150 PLEKHH2Q8IVE3 1493 aa18.55■□□□□ 0.56
SDC1-202ENST00000381150 PLA2R1Q13018 1463 aa18.53■□□□□ 0.56
SDC1-202ENST00000381150 DHX29Q7Z478 1369 aaKnown RBP18.51■□□□□ 0.55
SDC1-202ENST00000381150 IQGAP3Q86VI3 1631 aa18.5■□□□□ 0.55
SDC1-202ENST00000381150 DAXXQ9UER7 740 aaPredicted RBP18.5■□□□□ 0.55
SDC1-202ENST00000381150 TMC1Q8TDI8 760 aa18.49■□□□□ 0.55
SDC1-202ENST00000381150 BRPF3Q9ULD4 1205 aa18.49■□□□□ 0.55
SDC1-202ENST00000381150 MAGI2Q86UL8 1455 aa18.49■□□□□ 0.55
SDC1-202ENST00000381150 ARID4BQ4LE39 1312 aaPredicted RBP18.49■□□□□ 0.55
SDC1-202ENST00000381150 SLC4A3P48751 1232 aa18.49■□□□□ 0.55
SDC1-202ENST00000381150 DUOX2Q9NRD8 1548 aa18.48■□□□□ 0.55
SDC1-202ENST00000381150 SKAP1Q86WV1 359 aa18.48■□□□□ 0.55
SDC1-202ENST00000381150 ABCC1P33527 1531 aa18.48■□□□□ 0.55
SDC1-202ENST00000381150 NUDCQ9Y266 331 aa18.48■□□□□ 0.55
SDC1-202ENST00000381150 DCAF11Q8TEB1 546 aa18.47■□□□□ 0.55
SDC1-202ENST00000381150 TRAPPC8Q9Y2L5 1435 aa18.45■□□□□ 0.54
SDC1-202ENST00000381150 EFCAB2Q5VUJ9 269 aa18.45■□□□□ 0.54
SDC1-202ENST00000381150 KDM2AQ9Y2K7 1162 aa18.45■□□□□ 0.54
SDC1-202ENST00000381150 ERBINQ96RT1 1412 aa18.45■□□□□ 0.54
SDC1-202ENST00000381150 EXOC6Q8TAG9 804 aa18.45■□□□□ 0.54
SDC1-202ENST00000381150 CARD11Q9BXL7 1154 aa18.44■□□□□ 0.54
SDC1-202ENST00000381150 ATP10AO60312 1499 aa18.44■□□□□ 0.54
SDC1-202ENST00000381150 TRPM1Q7Z4N2 1603 aa18.44■□□□□ 0.54
SDC1-202ENST00000381150 ARAP3Q8WWN8 1544 aa18.44■□□□□ 0.54
SDC1-202ENST00000381150 CCDC144AA2RUR9 1427 aa18.43■□□□□ 0.54
SDC1-202ENST00000381150 PRAG1Q86YV5 1406 aa18.43■□□□□ 0.54
SDC1-202ENST00000381150 PDE4AP27815 886 aa18.41■□□□□ 0.54
SDC1-202ENST00000381150 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.41■□□□□ 0.54
SDC1-202ENST00000381150 ST20-MTHFSA0A0A6YYL1 179 aa18.4■□□□□ 0.54
SDC1-202ENST00000381150 A2MP01023 1474 aa18.4■□□□□ 0.54
SDC1-202ENST00000381150 ARXQ96QS3 562 aa18.38■□□□□ 0.53
SDC1-202ENST00000381150 ROCK2O75116 1388 aaKnown RBP18.37■□□□□ 0.53
SDC1-202ENST00000381150 RTEL1-TNFRSF6BF6WH68 1400 aa18.37■□□□□ 0.53
SDC1-202ENST00000381150 GPRASP1Q5JY77 1395 aa18.37■□□□□ 0.53
SDC1-202ENST00000381150 PLIN1O60240 522 aa18.36■□□□□ 0.53
SDC1-202ENST00000381150 E9PCH4 1651 aa18.36■□□□□ 0.53
SDC1-202ENST00000381150 WDR7Q9Y4E6 1490 aa18.36■□□□□ 0.53
SDC1-202ENST00000381150 ZFYVE16Q7Z3T8 1539 aa18.35■□□□□ 0.53
SDC1-202ENST00000381150 ABCA9Q8IUA7 1624 aa18.35■□□□□ 0.53
SDC1-202ENST00000381150 AFAP1Q8N556 730 aa18.35■□□□□ 0.53
SDC1-202ENST00000381150 LAMC1P11047 1609 aa18.35■□□□□ 0.53
SDC1-202ENST00000381150 NBPF1Q3BBV0 1214 aa18.34■□□□□ 0.53
SDC1-202ENST00000381150 RGL3Q3MIN7 710 aa18.34■□□□□ 0.53
SDC1-202ENST00000381150 PPM1GO15355 546 aaPredicted RBP18.33■□□□□ 0.52
SDC1-202ENST00000381150 DEPDC5O75140 1603 aa18.32■□□□□ 0.52
SDC1-202ENST00000381150 SPAG9O60271 1321 aaKnown RBP18.32■□□□□ 0.52
SDC1-202ENST00000381150 PRDM15P57071 1507 aaPredicted RBP18.31■□□□□ 0.52
SDC1-202ENST00000381150 INO80Q9ULG1 1556 aaPredicted RBP18.3■□□□□ 0.52
SDC1-202ENST00000381150 FANCAO15360 1455 aa18.29■□□□□ 0.52
SDC1-202ENST00000381150 TCERG1O14776 1098 aaKnown RBP18.28■□□□□ 0.52
SDC1-202ENST00000381150 RCAN3Q9UKA8 241 aa18.28■□□□□ 0.52
SDC1-202ENST00000381150 GSE1Q14687 1217 aa18.28■□□□□ 0.52
SDC1-202ENST00000381150 EIF2AK4Q9P2K8 1649 aaKnown RBP18.27■□□□□ 0.52
SDC1-202ENST00000381150 PTPRTO14522 1441 aa18.27■□□□□ 0.51
SDC1-202ENST00000381150 RRP1P56182 461 aaKnown RBP18.27■□□□□ 0.51
SDC1-202ENST00000381150 VWDEQ8N2E2 1590 aa18.27■□□□□ 0.51
SDC1-202ENST00000381150 TESK2Q96S53 571 aa18.27■□□□□ 0.51
SDC1-202ENST00000381150 FRAT1Q92837 279 aaPredicted RBP18.26■□□□□ 0.51
SDC1-202ENST00000381150 ATP7AQ04656 1500 aa18.26■□□□□ 0.51
SDC1-202ENST00000381150 SMG6Q86US8 1419 aaKnown RBP18.26■□□□□ 0.51
SDC1-202ENST00000381150 RNF17Q9BXT8 1623 aaKnown RBP18.25■□□□□ 0.51
SDC1-202ENST00000381150 PNISRQ8TF01 805 aaKnown RBP18.25■□□□□ 0.51
SDC1-202ENST00000381150 TRPM2O94759 1503 aa18.25■□□□□ 0.51
SDC1-202ENST00000381150 NFKBIBQ15653 356 aa18.25■□□□□ 0.51
SDC1-202ENST00000381150 ASXL2Q76L83 1435 aa18.25■□□□□ 0.51
SDC1-202ENST00000381150 BACH2Q9BYV9 841 aa18.24■□□□□ 0.51
SDC1-202ENST00000381150 SPHKAPQ2M3C7 1700 aa18.23■□□□□ 0.51
SDC1-202ENST00000381150 PER1O15534 1290 aaPredicted RBP18.23■□□□□ 0.51
SDC1-202ENST00000381150 USP35Q9P2H5 1018 aa18.23■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms