RNA–Protein interactions for RNA: ENST00000377298.8

CLSTN1-202, Transcript of calsyntenin 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLSTN1, Length 5,221 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN1-202ENST00000377298 TOPBP1Q92547 1522 aa22.68■■□□□ 1.22
CLSTN1-202ENST00000377298 HDAC5Q9UQL6 1122 aa22.68■■□□□ 1.22
CLSTN1-202ENST00000377298 RBM19Q9Y4C8 960 aaKnown RBP22.68■■□□□ 1.22
CLSTN1-202ENST00000377298 ABCF1Q8NE71 845 aaKnown RBP eCLIP22.67■■□□□ 1.22
CLSTN1-202ENST00000377298 NCOA2Q15596 1464 aa22.67■■□□□ 1.22
CLSTN1-202ENST00000377298 SYNJ1O43426 1573 aa22.67■■□□□ 1.22
CLSTN1-202ENST00000377298 TRIM44Q96DX7 344 aaPredicted RBP22.66■■□□□ 1.22
CLSTN1-202ENST00000377298 NOP58Q9Y2X3 529 aaKnown RBP22.66■■□□□ 1.22
CLSTN1-202ENST00000377298 ANKRD50Q9ULJ7 1429 aa22.66■■□□□ 1.22
CLSTN1-202ENST00000377298 SMC4Q9NTJ3 1288 aa22.65■■□□□ 1.22
CLSTN1-202ENST00000377298 COG3Q96JB2 828 aa22.65■■□□□ 1.22
CLSTN1-202ENST00000377298 CCDC146Q8IYE0 955 aa22.65■■□□□ 1.22
CLSTN1-202ENST00000377298 ZNF330Q9Y3S2 320 aaPredicted RBP22.63■■□□□ 1.21
CLSTN1-202ENST00000377298 HSCBQ8IWL3 235 aa22.63■■□□□ 1.21
CLSTN1-202ENST00000377298 MINK1Q8N4C8 1332 aaPredicted RBP22.62■■□□□ 1.21
CLSTN1-202ENST00000377298 POLA1P09884 1462 aaPredicted RBP22.62■■□□□ 1.21
CLSTN1-202ENST00000377298 LTV1Q96GA3 475 aaPredicted RBP22.62■■□□□ 1.21
CLSTN1-202ENST00000377298 NAP1L2Q9ULW6 460 aaPredicted RBP22.61■■□□□ 1.21
CLSTN1-202ENST00000377298 TULP1O00294 542 aaPredicted RBP22.61■■□□□ 1.21
CLSTN1-202ENST00000377298 PMFBP1Q8TBY8 1022 aa22.61■■□□□ 1.21
CLSTN1-202ENST00000377298 EFCAB5A4FU69 1503 aa22.6■■□□□ 1.21
CLSTN1-202ENST00000377298 CENPJQ9HC77 1338 aaPredicted RBP22.6■■□□□ 1.21
CLSTN1-202ENST00000377298 TOP2BQ02880 1626 aa22.6■■□□□ 1.21
CLSTN1-202ENST00000377298 APBB1O00213 710 aa22.6■■□□□ 1.21
CLSTN1-202ENST00000377298 TAOK2Q9UL54 1235 aa22.59■■□□□ 1.21
CLSTN1-202ENST00000377298 ARHGAP5Q13017 1502 aa22.59■■□□□ 1.21
CLSTN1-202ENST00000377298 HMMRO75330 724 aa22.58■■□□□ 1.2
CLSTN1-202ENST00000377298 PRXQ9BXM0 1461 aa22.57■■□□□ 1.2
CLSTN1-202ENST00000377298 PRKRIP1Q9H875 184 aaPredicted RBP22.57■■□□□ 1.2
CLSTN1-202ENST00000377298 KIAA1211Q6ZU35 1233 aa22.57■■□□□ 1.2
CLSTN1-202ENST00000377298 TSHZ2Q9NRE2 1034 aa22.57■■□□□ 1.2
CLSTN1-202ENST00000377298 ARAP1Q96P48 1450 aa22.57■■□□□ 1.2
CLSTN1-202ENST00000377298 AFAP1Q8N556 730 aa22.55■■□□□ 1.2
CLSTN1-202ENST00000377298 TPRNQ4KMQ1 711 aa22.55■■□□□ 1.2
CLSTN1-202ENST00000377298 PTMAP06454 111 aaKnown RBP22.54■■□□□ 1.2
CLSTN1-202ENST00000377298 DNMBPQ6XZF7 1577 aa22.53■■□□□ 1.2
CLSTN1-202ENST00000377298 TMX4Q9H1E5 349 aaPredicted RBP22.53■■□□□ 1.2
CLSTN1-202ENST00000377298 SNAPC4Q5SXM2 1469 aa22.52■■□□□ 1.2
CLSTN1-202ENST00000377298 TCERG1O14776 1098 aaKnown RBP22.51■■□□□ 1.19
CLSTN1-202ENST00000377298 SLC4A10Q6U841 1118 aa22.5■■□□□ 1.19
CLSTN1-202ENST00000377298 CLUAP1Q96AJ1 413 aa22.49■■□□□ 1.19
CLSTN1-202ENST00000377298 GOLGA6L4A6NEF3 574 aa22.49■■□□□ 1.19
CLSTN1-202ENST00000377298 PLEKHH2Q8IVE3 1493 aa22.49■■□□□ 1.19
CLSTN1-202ENST00000377298 RRP7AQ9Y3A4 280 aaKnown RBP22.48■■□□□ 1.19
CLSTN1-202ENST00000377298 GPATCH3Q96I76 525 aa22.48■■□□□ 1.19
CLSTN1-202ENST00000377298 MIA2Q96PC5 1412 aa22.47■■□□□ 1.19
CLSTN1-202ENST00000377298 AEBP2Q6ZN18 517 aaPredicted RBP22.47■■□□□ 1.19
CLSTN1-202ENST00000377298 TAF7LQ5H9L4 462 aa22.47■■□□□ 1.19
CLSTN1-202ENST00000377298 C1orf141Q5JVX7 400 aa22.47■■□□□ 1.19
CLSTN1-202ENST00000377298 NGEFQ8N5V2 710 aa22.47■■□□□ 1.19
CLSTN1-202ENST00000377298 GORABQ5T7V8 394 aa22.46■■□□□ 1.19
CLSTN1-202ENST00000377298 ISY1Q9ULR0 285 aaKnown RBP22.46■■□□□ 1.19
CLSTN1-202ENST00000377298 TROQ12816 1431 aaPredicted RBP22.46■■□□□ 1.19
CLSTN1-202ENST00000377298 E9PSI1 815 aa22.46■■□□□ 1.19
CLSTN1-202ENST00000377298 EHBP1L1Q8N3D4 1523 aa22.46■■□□□ 1.19
CLSTN1-202ENST00000377298 CHMP3Q9Y3E7 222 aa22.45■■□□□ 1.19
CLSTN1-202ENST00000377298 DIAPH1O60610 1272 aaKnown RBP22.44■■□□□ 1.18
CLSTN1-202ENST00000377298 DEKP35659 375 aaKnown RBP22.44■■□□□ 1.18
CLSTN1-202ENST00000377298 PSME1Q06323 249 aa22.44■■□□□ 1.18
CLSTN1-202ENST00000377298 RRBP1Q9P2E9 1410 aaKnown RBP22.43■■□□□ 1.18
CLSTN1-202ENST00000377298 EVA1CP58658 441 aa22.42■■□□□ 1.18
CLSTN1-202ENST00000377298 TEFQ10587 303 aa22.42■■□□□ 1.18
CLSTN1-202ENST00000377298 KIAA0586Q9BVV6 1533 aa22.4■■□□□ 1.18
CLSTN1-202ENST00000377298 HFM1A2PYH4 1435 aa22.39■■□□□ 1.18
CLSTN1-202ENST00000377298 LAMC3Q9Y6N6 1575 aa22.39■■□□□ 1.17
CLSTN1-202ENST00000377298 C9orf84Q5VXU9 1444 aa22.39■■□□□ 1.17
CLSTN1-202ENST00000377298 RTN4Q9NQC3 1192 aaKnown RBP22.39■■□□□ 1.17
CLSTN1-202ENST00000377298 HECW1Q76N89 1606 aa22.38■■□□□ 1.17
CLSTN1-202ENST00000377298 CCDC7Q96M83 1385 aa22.38■■□□□ 1.17
CLSTN1-202ENST00000377298 ZBED9Q6R2W3 1325 aa22.38■■□□□ 1.17
CLSTN1-202ENST00000377298 ABCA10Q8WWZ4 1543 aa22.37■■□□□ 1.17
CLSTN1-202ENST00000377298 PLCB2Q00722 1185 aa22.37■■□□□ 1.17
CLSTN1-202ENST00000377298 APAF1O14727 1248 aa22.37■■□□□ 1.17
CLSTN1-202ENST00000377298 GOLGA6L6A8MZA4 724 aa22.37■■□□□ 1.17
CLSTN1-202ENST00000377298 BICRAQ9NZM4 1560 aa22.37■■□□□ 1.17
CLSTN1-202ENST00000377298 KIF7Q2M1P5 1343 aa22.36■■□□□ 1.17
CLSTN1-202ENST00000377298 TRIM6-TRIM34B2RNG4 842 aa22.36■■□□□ 1.17
CLSTN1-202ENST00000377298 ZKSCAN2Q63HK3 967 aa22.35■■□□□ 1.17
CLSTN1-202ENST00000377298 ELL2O00472 640 aaPredicted RBP22.35■■□□□ 1.17
CLSTN1-202ENST00000377298 GTF2E1P29083 439 aaPredicted RBP22.34■■□□□ 1.17
CLSTN1-202ENST00000377298 ATF3P18847 181 aa22.34■■□□□ 1.17
CLSTN1-202ENST00000377298 GNL2Q13823 731 aaKnown RBP22.34■■□□□ 1.17
CLSTN1-202ENST00000377298 SCAPERQ9BY12 1400 aa22.33■■□□□ 1.17
CLSTN1-202ENST00000377298 TMEM132EQ6IEE7 984 aa22.33■■□□□ 1.17
CLSTN1-202ENST00000377298 NRDCO43847 1150 aa22.33■■□□□ 1.16
CLSTN1-202ENST00000377298 SPRYD3Q8NCJ5 442 aa22.33■■□□□ 1.16
CLSTN1-202ENST00000377298 TTC5Q8N0Z6 440 aa22.32■■□□□ 1.16
CLSTN1-202ENST00000377298 DNTTIP2Q5QJE6 756 aaKnown RBP22.31■■□□□ 1.16
CLSTN1-202ENST00000377298 CFAP70Q5T0N1 1121 aa22.3■■□□□ 1.16
CLSTN1-202ENST00000377298 G3V3G9 751 aa22.3■■□□□ 1.16
CLSTN1-202ENST00000377298 DCAF8Q5TAQ9 597 aa22.3■■□□□ 1.16
CLSTN1-202ENST00000377298 RUNDC1Q96C34 613 aa22.3■■□□□ 1.16
CLSTN1-202ENST00000377298 MFAP1P55081 439 aaKnown RBP22.3■■□□□ 1.16
CLSTN1-202ENST00000377298 RIPK4P57078 832 aa22.3■■□□□ 1.16
CLSTN1-202ENST00000377298 TXNDC2Q86VQ3 553 aa22.29■■□□□ 1.16
CLSTN1-202ENST00000377298 BCL2L13Q9BXK5 485 aa22.29■■□□□ 1.16
CLSTN1-202ENST00000377298 SLC52A1Q9NWF4 448 aa22.29■■□□□ 1.16
CLSTN1-202ENST00000377298 CABP2Q9NPB3 220 aa22.29■■□□□ 1.16
CLSTN1-202ENST00000377298 KIAA1107Q9UPP5 1409 aa22.28■■□□□ 1.16
CLSTN1-202ENST00000377298 GBP4Q96PP9 640 aa22.28■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms