RNA–Protein interactions for RNA: ENST00000376646.3

VPS13A-206, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 5 BASIC

Gene VPS13A, Length 2,262 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-206ENST00000376646 PCDHGA10Q9Y5H3 936 aa6.3□□□□□ -1.4
VPS13A-206ENST00000376646 E2F4Q16254 413 aa6.3□□□□□ -1.4
VPS13A-206ENST00000376646 DDX12PQ92771 950 aa6.3□□□□□ -1.4
VPS13A-206ENST00000376646 JPH4Q96JJ6 628 aa6.3□□□□□ -1.4
VPS13A-206ENST00000376646 ADGRD1Q6QNK2 874 aa6.29□□□□□ -1.4
VPS13A-206ENST00000376646 ZDHHC16Q969W1 377 aa6.28□□□□□ -1.4
VPS13A-206ENST00000376646 BCL2L12Q9HB09 334 aa6.28□□□□□ -1.4
VPS13A-206ENST00000376646 PLCB2Q00722 1185 aa6.28□□□□□ -1.4
VPS13A-206ENST00000376646 PSMG3-AS1Q96PY0 264 aa6.27□□□□□ -1.41
VPS13A-206ENST00000376646 RBM33Q96EV2 1170 aaKnown RBP6.27□□□□□ -1.41
VPS13A-206ENST00000376646 KRTAP9-2Q9BYQ4 174 aa6.27□□□□□ -1.41
VPS13A-206ENST00000376646 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.25□□□□□ -1.41
VPS13A-206ENST00000376646 PTPREP23469 700 aa6.25□□□□□ -1.41
VPS13A-206ENST00000376646 PDIA6Q15084 440 aa6.25□□□□□ -1.41
VPS13A-206ENST00000376646 COL9A1P20849 921 aa6.25□□□□□ -1.41
VPS13A-206ENST00000376646 TREML4Q6UXN2 200 aa6.25□□□□□ -1.41
VPS13A-206ENST00000376646 PHF14O94880 888 aa6.24□□□□□ -1.41
VPS13A-206ENST00000376646 KCNV2Q8TDN2 545 aa6.24□□□□□ -1.41
VPS13A-206ENST00000376646 VPS9D1Q9Y2B5 631 aa6.24□□□□□ -1.41
VPS13A-206ENST00000376646 KRTAP9-6A0A140TA67 174 aa6.24□□□□□ -1.41
VPS13A-206ENST00000376646 HRO43593 1189 aa6.24□□□□□ -1.41
VPS13A-206ENST00000376646 PRIM1P49642 420 aaKnown RBP6.24□□□□□ -1.41
VPS13A-206ENST00000376646 TYW1BQ6NUM6 668 aa6.24□□□□□ -1.41
VPS13A-206ENST00000376646 GRXCR2A6NFK2 248 aa6.23□□□□□ -1.41
VPS13A-206ENST00000376646 NBR1Q14596 966 aa6.23□□□□□ -1.41
VPS13A-206ENST00000376646 PROX2Q3B8N5 592 aa6.23□□□□□ -1.41
VPS13A-206ENST00000376646 KCNH8Q96L42 1107 aa6.23□□□□□ -1.41
VPS13A-206ENST00000376646 ZBED2Q9BTP6 218 aa6.23□□□□□ -1.41
VPS13A-206ENST00000376646 XP32Q5T750 250 aa6.23□□□□□ -1.41
VPS13A-206ENST00000376646 TK2O00142 265 aa6.22□□□□□ -1.41
VPS13A-206ENST00000376646 TSR1Q2NL82 804 aaKnown RBP6.22□□□□□ -1.41
VPS13A-206ENST00000376646 HAP1P54257 671 aaPredicted RBP6.22□□□□□ -1.41
VPS13A-206ENST00000376646 C6orf132Q5T0Z8 1188 aa6.21□□□□□ -1.42
VPS13A-206ENST00000376646 FBXW7Q969H0 707 aa6.2□□□□□ -1.42
VPS13A-206ENST00000376646 ARIH1Q9Y4X5 557 aaPredicted RBP6.2□□□□□ -1.42
VPS13A-206ENST00000376646 SPDYE16A6NNV3 312 aaPredicted RBP6.2□□□□□ -1.42
VPS13A-206ENST00000376646 EPAS1Q99814 870 aa6.2□□□□□ -1.42
VPS13A-206ENST00000376646 PPP1R3GB7ZBB8 358 aa6.19□□□□□ -1.42
VPS13A-206ENST00000376646 MAP3K7O43318 606 aa6.19□□□□□ -1.42
VPS13A-206ENST00000376646 KCTD12Q96CX2 325 aaKnown RBP6.19□□□□□ -1.42
VPS13A-206ENST00000376646 EN1Q05925 392 aaPredicted RBP6.19□□□□□ -1.42
VPS13A-206ENST00000376646 MLLT3P42568 568 aaPredicted RBP6.18□□□□□ -1.42
VPS13A-206ENST00000376646 BHMG1C9JSJ3 638 aaPredicted RBP6.18□□□□□ -1.42
VPS13A-206ENST00000376646 STAC3Q96MF2 364 aa6.18□□□□□ -1.42
VPS13A-206ENST00000376646 CDHR5Q9HBB8 845 aa6.18□□□□□ -1.42
VPS13A-206ENST00000376646 OSBPP22059 807 aa6.17□□□□□ -1.42
VPS13A-206ENST00000376646 SLC4A5Q9BY07 1137 aa6.17□□□□□ -1.42
VPS13A-206ENST00000376646 KDM2AQ9Y2K7 1162 aa6.17□□□□□ -1.42
VPS13A-206ENST00000376646 KRTAP4-8A0A0G2JLE6 195 aa6.15□□□□□ -1.42
VPS13A-206ENST00000376646 ARHGEF1Q92888 912 aaKnown RBP6.15□□□□□ -1.42
VPS13A-206ENST00000376646 KIAA1468Q9P260 1216 aa6.15□□□□□ -1.42
VPS13A-206ENST00000376646 SEPT9Q9UHD8 586 aaPredicted RBP6.15□□□□□ -1.42
VPS13A-206ENST00000376646 MRPL50Q8N5N7 158 aaKnown RBP6.15□□□□□ -1.43
VPS13A-206ENST00000376646 SEMA3EO15041 775 aa6.14□□□□□ -1.43
VPS13A-206ENST00000376646 PTPN5P54829 565 aa6.14□□□□□ -1.43
VPS13A-206ENST00000376646 TSKSQ9UJT2 592 aa6.14□□□□□ -1.43
VPS13A-206ENST00000376646 C3orf80F5H4A9 247 aa6.13□□□□□ -1.43
VPS13A-206ENST00000376646 FAM198AQ9UFP1 575 aa6.13□□□□□ -1.43
VPS13A-206ENST00000376646 RABGEF1Q9UJ41 708 aa6.13□□□□□ -1.43
VPS13A-206ENST00000376646 TRIM6-TRIM34B2RNG4 842 aa6.13□□□□□ -1.43
VPS13A-206ENST00000376646 LCE3BQ5TA77 95 aa6.13□□□□□ -1.43
VPS13A-206ENST00000376646 GOLGA8CPA6NN73 597 aa6.12□□□□□ -1.43
VPS13A-206ENST00000376646 SMAPO00193 183 aa6.12□□□□□ -1.43
VPS13A-206ENST00000376646 WNT2BQ93097 391 aa6.12□□□□□ -1.43
VPS13A-206ENST00000376646 NBPF3Q9H094 633 aa6.12□□□□□ -1.43
VPS13A-206ENST00000376646 NRG2O14511 850 aaPredicted RBP6.11□□□□□ -1.43
VPS13A-206ENST00000376646 CDCA7LQ96GN5 454 aa6.11□□□□□ -1.43
VPS13A-206ENST00000376646 BCAMP50895 628 aa6.1□□□□□ -1.43
VPS13A-206ENST00000376646 THSD4Q6ZMP0 1018 aa6.1□□□□□ -1.43
VPS13A-206ENST00000376646 P3H3Q8IVL6 736 aa6.1□□□□□ -1.43
VPS13A-206ENST00000376646 NPDC1Q9NQX5 325 aaPredicted RBP6.1□□□□□ -1.43
VPS13A-206ENST00000376646 PRSS12P56730 875 aa6.09□□□□□ -1.43
VPS13A-206ENST00000376646 ZFRQ96KR1 1074 aaKnown RBP6.09□□□□□ -1.44
VPS13A-206ENST00000376646 GFRA3O60609 400 aa6.08□□□□□ -1.44
VPS13A-206ENST00000376646 PADI6Q6TGC4 694 aa6.07□□□□□ -1.44
VPS13A-206ENST00000376646 WIPF1O43516 503 aa6.06□□□□□ -1.44
VPS13A-206ENST00000376646 PACS2Q86VP3 889 aa6.06□□□□□ -1.44
VPS13A-206ENST00000376646 NUTM2FA1L443 756 aa6.06□□□□□ -1.44
VPS13A-206ENST00000376646 ONECUT3O60422 494 aaPredicted RBP6.06□□□□□ -1.44
VPS13A-206ENST00000376646 FAM98CQ17RN3 349 aaKnown RBP6.06□□□□□ -1.44
VPS13A-206ENST00000376646 ANKK1Q8NFD2 765 aa6.06□□□□□ -1.44
VPS13A-206ENST00000376646 PNMA3Q9UL41 463 aa6.06□□□□□ -1.44
VPS13A-206ENST00000376646 RBM26Q5T8P6 1007 aaKnown RBP6.05□□□□□ -1.44
VPS13A-206ENST00000376646 NUDT18Q6ZVK8 323 aa6.05□□□□□ -1.44
VPS13A-206ENST00000376646 TATDN2Q93075 761 aa6.05□□□□□ -1.44
VPS13A-206ENST00000376646 FAM161AQ3B820 660 aa6.05□□□□□ -1.44
VPS13A-206ENST00000376646 LAPTM4BQ86VI4 370 aa6.05□□□□□ -1.44
VPS13A-206ENST00000376646 TESPA1A2RU30 521 aaPredicted RBP6.04□□□□□ -1.44
VPS13A-206ENST00000376646 SOWAHBA6NEL2 793 aa6.04□□□□□ -1.44
VPS13A-206ENST00000376646 LCE2BO14633 110 aa6.04□□□□□ -1.44
VPS13A-206ENST00000376646 CERKQ8TCT0 537 aa6.04□□□□□ -1.44
VPS13A-206ENST00000376646 WBP1LQ9NX94 342 aa6.04□□□□□ -1.44
VPS13A-206ENST00000376646 PTGDRQ13258 359 aa6.04□□□□□ -1.44
VPS13A-206ENST00000376646 SAMD7Q7Z3H4 446 aa6.04□□□□□ -1.44
VPS13A-206ENST00000376646 KRTAP4-7Q9BYR0 210 aa6.03□□□□□ -1.44
VPS13A-206ENST00000376646 VSIG10Q8N0Z9 540 aa6.02□□□□□ -1.44
VPS13A-206ENST00000376646 TTC13Q8NBP0 860 aa6.02□□□□□ -1.44
VPS13A-206ENST00000376646 NBPF26B4DH59 902 aa6.02□□□□□ -1.45
VPS13A-206ENST00000376646 CDKN2AIPQ9NXV6 580 aaPredicted RBP6.02□□□□□ -1.45
VPS13A-206ENST00000376646 HPS5Q9UPZ3 1129 aa6.02□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 9.6 ms