RNA–Protein interactions for RNA: ENST00000374481.7

CD28-202, Transcript of CD28 molecule, humanhuman

TSL 1 (best) BASIC

Gene CD28, Length 4,526 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD28-202ENST00000374481 PHF14O94880 888 aa12.73□□□□□ -0.37
CD28-202ENST00000374481 AEBP1Q8IUX7 1158 aa12.73□□□□□ -0.37
CD28-202ENST00000374481 PANK2Q9BZ23 570 aa12.73□□□□□ -0.37
CD28-202ENST00000374481 PLCD3Q8N3E9 789 aa12.72□□□□□ -0.37
CD28-202ENST00000374481 MYBBP1AQ9BQG0 1328 aaKnown RBP12.72□□□□□ -0.37
CD28-202ENST00000374481 HTATSF1O43719 755 aaKnown RBP12.71□□□□□ -0.37
CD28-202ENST00000374481 CHMP4BQ9H444 224 aaKnown RBP12.71□□□□□ -0.37
CD28-202ENST00000374481 SMAP1Q8IYB5 467 aaPredicted RBP12.71□□□□□ -0.38
CD28-202ENST00000374481 C22orf23Q9BZE7 217 aa12.7□□□□□ -0.38
CD28-202ENST00000374481 GOLGA6L4A6NEF3 574 aa12.7□□□□□ -0.38
CD28-202ENST00000374481 SKAP1Q86WV1 359 aa12.7□□□□□ -0.38
CD28-202ENST00000374481 CCDC7Q96M83 1385 aa12.7□□□□□ -0.38
CD28-202ENST00000374481 CGNL1Q0VF96 1302 aa12.69□□□□□ -0.38
CD28-202ENST00000374481 TEX35Q5T0J7 233 aa12.69□□□□□ -0.38
CD28-202ENST00000374481 FOXD1Q16676 465 aa12.69□□□□□ -0.38
CD28-202ENST00000374481 DYNC1I1O14576 645 aa12.69□□□□□ -0.38
CD28-202ENST00000374481 XPCQ01831 940 aaPredicted RBP12.68□□□□□ -0.38
CD28-202ENST00000374481 SASS6Q6UVJ0 657 aa12.68□□□□□ -0.38
CD28-202ENST00000374481 CFAP44Q96MT7 982 aa12.68□□□□□ -0.38
CD28-202ENST00000374481 RNF214Q8ND24 703 aa12.68□□□□□ -0.38
CD28-202ENST00000374481 KIF15Q9NS87 1388 aa12.68□□□□□ -0.38
CD28-202ENST00000374481 PAXIP1Q6ZW49 1069 aaPredicted RBP12.68□□□□□ -0.38
CD28-202ENST00000374481 CLUAP1Q96AJ1 413 aa12.68□□□□□ -0.38
CD28-202ENST00000374481 FOXD4L5Q5VV16 416 aaPredicted RBP12.67□□□□□ -0.38
CD28-202ENST00000374481 FOXD4L4Q8WXT5 416 aaPredicted RBP12.67□□□□□ -0.38
CD28-202ENST00000374481 CAVIN1Q6NZI2 390 aaKnown RBP12.67□□□□□ -0.38
CD28-202ENST00000374481 PDCL2Q8N4E4 241 aa12.67□□□□□ -0.38
CD28-202ENST00000374481 PHLDB1Q86UU1 1377 aa12.67□□□□□ -0.38
CD28-202ENST00000374481 E9PSI1 815 aa12.67□□□□□ -0.38
CD28-202ENST00000374481 MCTP1Q6DN14 999 aa12.67□□□□□ -0.38
CD28-202ENST00000374481 CHMP4AQ9BY43 222 aa12.67□□□□□ -0.38
CD28-202ENST00000374481 COG6Q9Y2V7 657 aa12.67□□□□□ -0.38
CD28-202ENST00000374481 KIF3AQ9Y496 699 aa12.67□□□□□ -0.38
CD28-202ENST00000374481 ROCK2O75116 1388 aaKnown RBP12.66□□□□□ -0.38
CD28-202ENST00000374481 GPS2Q13227 327 aa12.66□□□□□ -0.38
CD28-202ENST00000374481 ZNF592Q92610 1267 aa12.66□□□□□ -0.38
CD28-202ENST00000374481 LETM1O95202 739 aaPredicted RBP12.66□□□□□ -0.38
CD28-202ENST00000374481 CENPJQ9HC77 1338 aaPredicted RBP12.66□□□□□ -0.38
CD28-202ENST00000374481 RGL3Q3MIN7 710 aa12.65□□□□□ -0.38
CD28-202ENST00000374481 CDCA7LQ96GN5 454 aa12.65□□□□□ -0.38
CD28-202ENST00000374481 KIF7Q2M1P5 1343 aa12.64□□□□□ -0.39
CD28-202ENST00000374481 KCNJ4P48050 445 aa12.64□□□□□ -0.39
CD28-202ENST00000374481 WDR97A6NE52 1622 aa12.64□□□□□ -0.39
CD28-202ENST00000374481 CDCA8Q53HL2 280 aa12.63□□□□□ -0.39
CD28-202ENST00000374481 MPHOSPH9Q99550 1183 aa12.63□□□□□ -0.39
CD28-202ENST00000374481 GTPBP4Q9BZE4 634 aaKnown RBP12.63□□□□□ -0.39
CD28-202ENST00000374481 IRX3P78415 501 aaPredicted RBP12.63□□□□□ -0.39
CD28-202ENST00000374481 NOM1Q5C9Z4 860 aaKnown RBP12.63□□□□□ -0.39
CD28-202ENST00000374481 KIF16BQ96L93 1317 aa12.63□□□□□ -0.39
CD28-202ENST00000374481 U2SURPO15042 1029 aaKnown RBP12.63□□□□□ -0.39
CD28-202ENST00000374481 NUCB2P80303 420 aa12.63□□□□□ -0.39
CD28-202ENST00000374481 ITPRIPQ8IWB1 547 aa12.62□□□□□ -0.39
CD28-202ENST00000374481 ERICH4A6NGS2 130 aa12.62□□□□□ -0.39
CD28-202ENST00000374481 ST18O60284 1047 aa12.62□□□□□ -0.39
CD28-202ENST00000374481 CFAP53Q96M91 514 aa12.62□□□□□ -0.39
CD28-202ENST00000374481 EIF4G1Q04637 1599 aaKnown RBP12.62□□□□□ -0.39
CD28-202ENST00000374481 FHAD1B1AJZ9 1412 aa12.62□□□□□ -0.39
CD28-202ENST00000374481 FMN1Q68DA7 1419 aa12.62□□□□□ -0.39
CD28-202ENST00000374481 VGLL3A8MV65 326 aa12.61□□□□□ -0.39
CD28-202ENST00000374481 OFD1O75665 1012 aa12.61□□□□□ -0.39
CD28-202ENST00000374481 PPP4R3BQ5MIZ7 849 aa12.61□□□□□ -0.39
CD28-202ENST00000374481 MCCP23508 829 aa12.61□□□□□ -0.39
CD28-202ENST00000374481 TSPYL1Q9H0U9 437 aa12.61□□□□□ -0.39
CD28-202ENST00000374481 RAPGEF2Q9Y4G8 1499 aa12.61□□□□□ -0.39
CD28-202ENST00000374481 KIF20AO95235 890 aa12.6□□□□□ -0.39
CD28-202ENST00000374481 ARHGAP35Q9NRY4 1499 aa12.6□□□□□ -0.39
CD28-202ENST00000374481 CCDC94Q9BW85 323 aaPredicted RBP12.6□□□□□ -0.39
CD28-202ENST00000374481 TMF1P82094 1093 aa12.6□□□□□ -0.39
CD28-202ENST00000374481 SETQ01105 290 aaPredicted RBP12.6□□□□□ -0.39
CD28-202ENST00000374481 MPNDQ8N594 471 aa12.59□□□□□ -0.39
CD28-202ENST00000374481 PNISRQ8TF01 805 aaKnown RBP12.59□□□□□ -0.39
CD28-202ENST00000374481 CWC15Q9P013 229 aaKnown RBP12.59□□□□□ -0.39
CD28-202ENST00000374481 CALCOCO1Q9P1Z2 691 aa12.59□□□□□ -0.39
CD28-202ENST00000374481 PDS5BQ9NTI5 1447 aa12.59□□□□□ -0.39
CD28-202ENST00000374481 SPDYE4A6NLX3 237 aa12.59□□□□□ -0.39
CD28-202ENST00000374481 FOXD4L6Q3SYB3 417 aaPredicted RBP12.59□□□□□ -0.39
CD28-202ENST00000374481 FOXD4L3Q6VB84 417 aaPredicted RBP12.59□□□□□ -0.39
CD28-202ENST00000374481 IFT57Q9NWB7 429 aa12.59□□□□□ -0.39
CD28-202ENST00000374481 CCDC146Q8IYE0 955 aa12.58□□□□□ -0.4
CD28-202ENST00000374481 DNAJC2Q99543 621 aaKnown RBP12.58□□□□□ -0.4
CD28-202ENST00000374481 TRERF1Q96PN7 1200 aa12.58□□□□□ -0.4
CD28-202ENST00000374481 KIF21BO75037 1637 aa12.57□□□□□ -0.4
CD28-202ENST00000374481 KIF27Q86VH2 1401 aa12.57□□□□□ -0.4
CD28-202ENST00000374481 TBC1D2Q9BYX2 928 aa12.56□□□□□ -0.4
CD28-202ENST00000374481 TIGD1Q96MW7 591 aa12.56□□□□□ -0.4
CD28-202ENST00000374481 CIZ1Q9ULV3 898 aaPredicted RBP12.56□□□□□ -0.4
CD28-202ENST00000374481 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.56□□□□□ -0.4
CD28-202ENST00000374481 PRPF40AO75400 957 aaKnown RBP12.55□□□□□ -0.4
CD28-202ENST00000374481 IPO8O15397 1037 aaKnown RBP12.55□□□□□ -0.4
CD28-202ENST00000374481 NBPF1Q3BBV0 1214 aa12.55□□□□□ -0.4
CD28-202ENST00000374481 CALRP27797 417 aaKnown RBP12.55□□□□□ -0.4
CD28-202ENST00000374481 NOL8Q76FK4 1167 aaKnown RBP12.55□□□□□ -0.4
CD28-202ENST00000374481 MCM5P33992 734 aa12.54□□□□□ -0.4
CD28-202ENST00000374481 MBD3O95983 291 aa12.54□□□□□ -0.4
CD28-202ENST00000374481 TSPY4P0CV99 314 aa12.54□□□□□ -0.4
CD28-202ENST00000374481 TSPY10P0CW01 314 aa12.54□□□□□ -0.4
CD28-202ENST00000374481 BCL2L13Q9BXK5 485 aa12.54□□□□□ -0.4
CD28-202ENST00000374481 ARGLU1Q9NWB6 273 aaPredicted RBP12.54□□□□□ -0.4
CD28-202ENST00000374481 BRD4O60885 1362 aaPredicted RBP12.54□□□□□ -0.4
CD28-202ENST00000374481 IGSF3O75054 1194 aa12.54□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms