RNA–Protein interactions for RNA: ENST00000373264.4

CDK9-201, Transcript of cyclin dependent kinase 9, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDK9, Length 2,463 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDK9-201ENST00000373264 MYO5CQ9NQX4 1742 aa32.73■■■□□ 2.83
CDK9-201ENST00000373264 PLA2R1Q13018 1463 aa32.71■■■□□ 2.83
CDK9-201ENST00000373264 ZCCHC11Q5TAX3 1644 aaKnown RBP32.68■■■□□ 2.82
CDK9-201ENST00000373264 CCDC144AA2RUR9 1427 aa32.67■■■□□ 2.82
CDK9-201ENST00000373264 MAST1Q9Y2H9 1570 aa32.66■■■□□ 2.82
CDK9-201ENST00000373264 NBPF1Q3BBV0 1214 aa32.66■■■□□ 2.82
CDK9-201ENST00000373264 ROCK2O75116 1388 aaKnown RBP32.66■■■□□ 2.82
CDK9-201ENST00000373264 UNC13BO14795 1591 aa32.64■■■□□ 2.82
CDK9-201ENST00000373264 CLASP1Q7Z460 1538 aa32.63■■■□□ 2.81
CDK9-201ENST00000373264 PLCH2O75038 1416 aa32.61■■■□□ 2.81
CDK9-201ENST00000373264 TRAPPC8Q9Y2L5 1435 aa32.6■■■□□ 2.81
CDK9-201ENST00000373264 ZBED9Q6R2W3 1325 aa32.6■■■□□ 2.81
CDK9-201ENST00000373264 PRAG1Q86YV5 1406 aa32.58■■■□□ 2.81
CDK9-201ENST00000373264 PLXNC1O60486 1568 aa32.58■■■□□ 2.81
CDK9-201ENST00000373264 ARID4BQ4LE39 1312 aaPredicted RBP32.56■■■□□ 2.8
CDK9-201ENST00000373264 EFCAB2Q5VUJ9 269 aa32.56■■■□□ 2.8
CDK9-201ENST00000373264 A2MP01023 1474 aa32.56■■■□□ 2.8
CDK9-201ENST00000373264 AFAP1Q8N556 730 aa32.54■■■□□ 2.8
CDK9-201ENST00000373264 TRPM1Q7Z4N2 1603 aa32.53■■■□□ 2.8
CDK9-201ENST00000373264 IQGAP3Q86VI3 1631 aa32.53■■■□□ 2.8
CDK9-201ENST00000373264 DUOX2Q9NRD8 1548 aa32.52■■■□□ 2.8
CDK9-201ENST00000373264 ABCC1P33527 1531 aa32.49■■■□□ 2.79
CDK9-201ENST00000373264 UHRF1BP1LA0JNW5 1464 aa32.48■■■□□ 2.79
CDK9-201ENST00000373264 ERBINQ96RT1 1412 aa32.44■■■□□ 2.78
CDK9-201ENST00000373264 PNISRQ8TF01 805 aaKnown RBP32.44■■■□□ 2.78
CDK9-201ENST00000373264 TMC1Q8TDI8 760 aa32.43■■■□□ 2.78
CDK9-201ENST00000373264 MAGI2Q86UL8 1455 aa32.43■■■□□ 2.78
CDK9-201ENST00000373264 SPAG9O60271 1321 aaKnown RBP32.41■■■□□ 2.78
CDK9-201ENST00000373264 E9PCH4 1651 aa32.38■■■□□ 2.77
CDK9-201ENST00000373264 RBM19Q9Y4C8 960 aaKnown RBP32.38■■■□□ 2.77
CDK9-201ENST00000373264 DISP3Q9P2K9 1392 aa32.37■■■□□ 2.77
CDK9-201ENST00000373264 TESK2Q96S53 571 aa32.36■■■□□ 2.77
CDK9-201ENST00000373264 GPRASP1Q5JY77 1395 aa32.35■■■□□ 2.77
CDK9-201ENST00000373264 ATP10AO60312 1499 aa32.32■■■□□ 2.76
CDK9-201ENST00000373264 ZFYVE16Q7Z3T8 1539 aa32.31■■■□□ 2.76
CDK9-201ENST00000373264 MYBBP1AQ9BQG0 1328 aaKnown RBP32.31■■■□□ 2.76
CDK9-201ENST00000373264 B4GALNT3Q6L9W6 998 aa32.31■■■□□ 2.76
CDK9-201ENST00000373264 PRDM15P57071 1507 aaPredicted RBP32.3■■■□□ 2.76
CDK9-201ENST00000373264 PER1O15534 1290 aaPredicted RBP32.28■■■□□ 2.76
CDK9-201ENST00000373264 WDR7Q9Y4E6 1490 aa32.28■■■□□ 2.76
CDK9-201ENST00000373264 PPP4R2Q9NY27 417 aa32.27■■■□□ 2.76
CDK9-201ENST00000373264 MYT1LQ9UL68 1186 aa32.27■■■□□ 2.76
CDK9-201ENST00000373264 SMG6Q86US8 1419 aaKnown RBP32.26■■■□□ 2.76
CDK9-201ENST00000373264 RALBP1Q15311 655 aa32.25■■■□□ 2.75
CDK9-201ENST00000373264 COL17A1Q9UMD9 1497 aaPredicted RBP32.25■■■□□ 2.75
CDK9-201ENST00000373264 CC2D1BQ5T0F9 858 aaKnown RBP32.25■■■□□ 2.75
CDK9-201ENST00000373264 FANCAO15360 1455 aa32.24■■■□□ 2.75
CDK9-201ENST00000373264 NUDCQ9Y266 331 aa32.24■■■□□ 2.75
CDK9-201ENST00000373264 SALL2Q9Y467 1007 aaPredicted RBP32.23■■■□□ 2.75
CDK9-201ENST00000373264 BRD4O60885 1362 aaPredicted RBP32.22■■■□□ 2.75
CDK9-201ENST00000373264 LRPPRCP42704 1394 aaKnown RBP32.22■■■□□ 2.75
CDK9-201ENST00000373264 PANK3Q9H999 370 aa32.21■■■□□ 2.75
CDK9-201ENST00000373264 SCAPERQ9BY12 1400 aa32.2■■■□□ 2.75
CDK9-201ENST00000373264 KIF3BO15066 747 aa32.2■■■□□ 2.74
CDK9-201ENST00000373264 RTEL1-TNFRSF6BF6WH68 1400 aa32.2■■■□□ 2.74
CDK9-201ENST00000373264 KTN1Q86UP2 1357 aaKnown RBP32.19■■■□□ 2.74
CDK9-201ENST00000373264 PARD3Q8TEW0 1356 aa32.19■■■□□ 2.74
CDK9-201ENST00000373264 LAMC1P11047 1609 aa32.19■■■□□ 2.74
CDK9-201ENST00000373264 EIF2AK4Q9P2K8 1649 aaKnown RBP32.18■■■□□ 2.74
CDK9-201ENST00000373264 ERICH6BQ5W0A0 696 aa32.17■■■□□ 2.74
CDK9-201ENST00000373264 ATP7AQ04656 1500 aa32.16■■■□□ 2.74
CDK9-201ENST00000373264 ARAP3Q8WWN8 1544 aa32.16■■■□□ 2.74
CDK9-201ENST00000373264 ABCA9Q8IUA7 1624 aa32.15■■■□□ 2.74
CDK9-201ENST00000373264 CLTCL1P53675 1640 aa32.15■■■□□ 2.74
CDK9-201ENST00000373264 ADGRL1O94910 1474 aa32.14■■■□□ 2.74
CDK9-201ENST00000373264 ASXL2Q76L83 1435 aa32.13■■■□□ 2.73
CDK9-201ENST00000373264 TMF1P82094 1093 aa32.13■■■□□ 2.73
CDK9-201ENST00000373264 NLRP13Q86W25 1043 aa32.13■■■□□ 2.73
CDK9-201ENST00000373264 MADDQ8WXG6 1647 aa32.13■■■□□ 2.73
CDK9-201ENST00000373264 TRPM2O94759 1503 aa32.13■■■□□ 2.73
CDK9-201ENST00000373264 RNF17Q9BXT8 1623 aaKnown RBP32.13■■■□□ 2.73
CDK9-201ENST00000373264 INO80Q9ULG1 1556 aaPredicted RBP32.12■■■□□ 2.73
CDK9-201ENST00000373264 SPHKAPQ2M3C7 1700 aa32.11■■■□□ 2.73
CDK9-201ENST00000373264 DEPDC5O75140 1603 aa32.1■■■□□ 2.73
CDK9-201ENST00000373264 PTPRTO14522 1441 aa32.09■■■□□ 2.73
CDK9-201ENST00000373264 UGGT1Q9NYU2 1555 aa32.09■■■□□ 2.73
CDK9-201ENST00000373264 CEP152O94986 1710 aa32.06■■■□□ 2.72
CDK9-201ENST00000373264 RNF123Q5XPI4 1314 aa32.05■■■□□ 2.72
CDK9-201ENST00000373264 TET3O43151 1660 aa32.04■■■□□ 2.72
CDK9-201ENST00000373264 KANK1Q14678 1352 aa32.01■■■□□ 2.71
CDK9-201ENST00000373264 MROH1Q8NDA8 1641 aa32.01■■■□□ 2.71
CDK9-201ENST00000373264 VWDEQ8N2E2 1590 aa32■■■□□ 2.71
CDK9-201ENST00000373264 IQGAP1P46940 1657 aa32■■■□□ 2.71
CDK9-201ENST00000373264 CDCA7LQ96GN5 454 aa31.97■■■□□ 2.71
CDK9-201ENST00000373264 CFAP70Q5T0N1 1121 aa31.95■■■□□ 2.71
CDK9-201ENST00000373264 KIDINS220Q9ULH0 1771 aa31.95■■■□□ 2.7
CDK9-201ENST00000373264 MSH5O43196 834 aa31.94■■■□□ 2.7
CDK9-201ENST00000373264 ADGRF5Q8IZF2 1346 aa31.94■■■□□ 2.7
CDK9-201ENST00000373264 SCAF11Q99590 1463 aaKnown RBP31.93■■■□□ 2.7
CDK9-201ENST00000373264 WASHC2CQ9Y4E1 1318 aa31.92■■■□□ 2.7
CDK9-201ENST00000373264 ANP32EQ9BTT0 268 aa31.92■■■□□ 2.7
CDK9-201ENST00000373264 CCDC136Q96JN2 1154 aa31.87■■■□□ 2.69
CDK9-201ENST00000373264 KNSTRNQ9Y448 316 aa31.87■■■□□ 2.69
CDK9-201ENST00000373264 CFAP65Q6ZU64 1925 aaKnown RBP31.86■■■□□ 2.69
CDK9-201ENST00000373264 PPRC1Q5VV67 1664 aaKnown RBP31.86■■■□□ 2.69
CDK9-201ENST00000373264 AMER1Q5JTC6 1135 aaPredicted RBP31.85■■■□□ 2.69
CDK9-201ENST00000373264 OSCARQ8IYS5 282 aa31.85■■■□□ 2.69
CDK9-201ENST00000373264 NPM1P06748 294 aaKnown RBP eCLIP31.85■■■□□ 2.69
CDK9-201ENST00000373264 ADAMTS8Q9UP79 889 aa31.84■■■□□ 2.69
CDK9-201ENST00000373264 CHGAP10645 457 aaKnown RBP31.83■■■□□ 2.69
Retrieved 100 of 20,778 RNA–protein pairs in 55.9 ms