RNA–Protein interactions for RNA: ENST00000372407.4

PTPRF-203, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,600 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-203ENST00000372407 STK26Q9P289 416 aa14.43□□□□□ -0.1
PTPRF-203ENST00000372407 PRDM2Q13029 1718 aa14.43□□□□□ -0.1
PTPRF-203ENST00000372407 PTMSP20962 102 aa14.43□□□□□ -0.1
PTPRF-203ENST00000372407 PMFBP1Q8TBY8 1022 aa14.42□□□□□ -0.1
PTPRF-203ENST00000372407 KIAA1211Q6ZU35 1233 aa14.42□□□□□ -0.1
PTPRF-203ENST00000372407 GRIN2AQ12879 1464 aa14.42□□□□□ -0.1
PTPRF-203ENST00000372407 APBB1O00213 710 aa14.42□□□□□ -0.1
PTPRF-203ENST00000372407 ITPRIPQ8IWB1 547 aa14.42□□□□□ -0.1
PTPRF-203ENST00000372407 WASHC2CQ9Y4E1 1318 aa14.41□□□□□ -0.1
PTPRF-203ENST00000372407 ERICH3Q5RHP9 1530 aa14.41□□□□□ -0.1
PTPRF-203ENST00000372407 AEBP2Q6ZN18 517 aaPredicted RBP14.41□□□□□ -0.1
PTPRF-203ENST00000372407 PRXQ9BXM0 1461 aa14.4□□□□□ -0.1
PTPRF-203ENST00000372407 GZF1Q9H116 711 aaPredicted RBP14.38□□□□□ -0.11
PTPRF-203ENST00000372407 CHMP4AQ9BY43 222 aa14.38□□□□□ -0.11
PTPRF-203ENST00000372407 NPHP1O15259 732 aa14.37□□□□□ -0.11
PTPRF-203ENST00000372407 DRC7Q8IY82 874 aa14.37□□□□□ -0.11
PTPRF-203ENST00000372407 SMC4Q9NTJ3 1288 aa14.37□□□□□ -0.11
PTPRF-203ENST00000372407 CLUAP1Q96AJ1 413 aa14.35□□□□□ -0.11
PTPRF-203ENST00000372407 KIAA2012Q0VF49 1180 aa14.35□□□□□ -0.11
PTPRF-203ENST00000372407 EIF3AQ14152 1382 aaKnown RBP14.35□□□□□ -0.11
PTPRF-203ENST00000372407 PHLDB1Q86UU1 1377 aa14.35□□□□□ -0.11
PTPRF-203ENST00000372407 KIF21BO75037 1637 aa14.35□□□□□ -0.11
PTPRF-203ENST00000372407 MFAP1P55081 439 aaKnown RBP14.34□□□□□ -0.11
PTPRF-203ENST00000372407 CENPJQ9HC77 1338 aaPredicted RBP14.34□□□□□ -0.11
PTPRF-203ENST00000372407 TULP1O00294 542 aaPredicted RBP14.34□□□□□ -0.11
PTPRF-203ENST00000372407 DHX57Q6P158 1386 aaKnown RBP14.34□□□□□ -0.11
PTPRF-203ENST00000372407 UACAQ9BZF9 1416 aa14.34□□□□□ -0.11
PTPRF-203ENST00000372407 TERF2IPQ9NYB0 399 aa14.34□□□□□ -0.11
PTPRF-203ENST00000372407 SYAP1Q96A49 352 aaPredicted RBP14.33□□□□□ -0.12
PTPRF-203ENST00000372407 STK31Q9BXU1 1019 aa14.33□□□□□ -0.12
PTPRF-203ENST00000372407 HMMRO75330 724 aa14.32□□□□□ -0.12
PTPRF-203ENST00000372407 KIF21AQ7Z4S6 1674 aa14.32□□□□□ -0.12
PTPRF-203ENST00000372407 CUL7Q14999 1698 aa14.32□□□□□ -0.12
PTPRF-203ENST00000372407 GOLGA6L3A6NEY3 463 aa14.32□□□□□ -0.12
PTPRF-203ENST00000372407 PRKRIP1Q9H875 184 aaPredicted RBP14.32□□□□□ -0.12
PTPRF-203ENST00000372407 IQGAP2Q13576 1575 aa14.32□□□□□ -0.12
PTPRF-203ENST00000372407 CASKIN1Q8WXD9 1431 aa14.32□□□□□ -0.12
PTPRF-203ENST00000372407 EFCAB5A4FU69 1503 aa14.32□□□□□ -0.12
PTPRF-203ENST00000372407 ST20-MTHFSA0A0A6YYL1 179 aa14.31□□□□□ -0.12
PTPRF-203ENST00000372407 EID1Q9Y6B2 187 aa14.31□□□□□ -0.12
PTPRF-203ENST00000372407 HTATSF1O43719 755 aaKnown RBP14.31□□□□□ -0.12
PTPRF-203ENST00000372407 HDAC5Q9UQL6 1122 aa14.31□□□□□ -0.12
PTPRF-203ENST00000372407 CCDC146Q8IYE0 955 aa14.3□□□□□ -0.12
PTPRF-203ENST00000372407 MYBBP1AQ9BQG0 1328 aaKnown RBP14.3□□□□□ -0.12
PTPRF-203ENST00000372407 KIF15Q9NS87 1388 aa14.3□□□□□ -0.12
PTPRF-203ENST00000372407 USP35Q9P2H5 1018 aa14.3□□□□□ -0.12
PTPRF-203ENST00000372407 GNL2Q13823 731 aaKnown RBP14.29□□□□□ -0.12
PTPRF-203ENST00000372407 WDR62O43379 1518 aa14.28□□□□□ -0.12
PTPRF-203ENST00000372407 LMOD3Q0VAK6 560 aa14.27□□□□□ -0.12
PTPRF-203ENST00000372407 BIVM-ERCC5R4GMW8 1640 aa14.27□□□□□ -0.13
PTPRF-203ENST00000372407 ZBED9Q6R2W3 1325 aa14.27□□□□□ -0.13
PTPRF-203ENST00000372407 CENPQQ7L2Z9 268 aaPredicted RBP14.27□□□□□ -0.13
PTPRF-203ENST00000372407 PAK3O75914 559 aaPredicted RBP14.26□□□□□ -0.13
PTPRF-203ENST00000372407 PDE4AP27815 886 aa14.26□□□□□ -0.13
PTPRF-203ENST00000372407 TRIM6-TRIM34B2RNG4 842 aa14.25□□□□□ -0.13
PTPRF-203ENST00000372407 PANK3Q9H999 370 aa14.25□□□□□ -0.13
PTPRF-203ENST00000372407 ARHGAP5Q13017 1502 aa14.25□□□□□ -0.13
PTPRF-203ENST00000372407 AFAP1Q8N556 730 aa14.25□□□□□ -0.13
PTPRF-203ENST00000372407 MYOM3Q5VTT5 1437 aa14.24□□□□□ -0.13
PTPRF-203ENST00000372407 FAM161AQ3B820 660 aa14.24□□□□□ -0.13
PTPRF-203ENST00000372407 SLC4A10Q6U841 1118 aa14.23□□□□□ -0.13
PTPRF-203ENST00000372407 ZNF644Q9H582 1327 aaPredicted RBP14.23□□□□□ -0.13
PTPRF-203ENST00000372407 FYCO1Q9BQS8 1478 aa14.23□□□□□ -0.13
PTPRF-203ENST00000372407 GPATCH3Q96I76 525 aa14.23□□□□□ -0.13
PTPRF-203ENST00000372407 ST18O60284 1047 aa14.22□□□□□ -0.13
PTPRF-203ENST00000372407 RRP1P56182 461 aaKnown RBP14.22□□□□□ -0.13
PTPRF-203ENST00000372407 ARAP1Q96P48 1450 aa14.22□□□□□ -0.13
PTPRF-203ENST00000372407 CGNL1Q0VF96 1302 aa14.22□□□□□ -0.13
PTPRF-203ENST00000372407 EXOC6Q8TAG9 804 aa14.22□□□□□ -0.13
PTPRF-203ENST00000372407 TRAK1Q9UPV9 953 aa14.22□□□□□ -0.13
PTPRF-203ENST00000372407 TROQ12816 1431 aaPredicted RBP14.21□□□□□ -0.13
PTPRF-203ENST00000372407 E9PSI1 815 aa14.21□□□□□ -0.13
PTPRF-203ENST00000372407 CSPP1Q1MSJ5 1256 aa14.21□□□□□ -0.13
PTPRF-203ENST00000372407 CSB-PGBD3P0DP91 1061 aa14.21□□□□□ -0.13
PTPRF-203ENST00000372407 CCDC144AA2RUR9 1427 aa14.21□□□□□ -0.14
PTPRF-203ENST00000372407 GORABQ5T7V8 394 aa14.2□□□□□ -0.14
PTPRF-203ENST00000372407 CCDC34Q96HJ3 373 aa14.2□□□□□ -0.14
PTPRF-203ENST00000372407 RRP7AQ9Y3A4 280 aaKnown RBP14.2□□□□□ -0.14
PTPRF-203ENST00000372407 PLIN1O60240 522 aa14.19□□□□□ -0.14
PTPRF-203ENST00000372407 DDX11L8A8MPP1 907 aa14.19□□□□□ -0.14
PTPRF-203ENST00000372407 FOXD4L1Q9NU39 408 aa14.19□□□□□ -0.14
PTPRF-203ENST00000372407 RAPGEF3O95398 923 aa14.19□□□□□ -0.14
PTPRF-203ENST00000372407 ZNF330Q9Y3S2 320 aaPredicted RBP14.19□□□□□ -0.14
PTPRF-203ENST00000372407 ZKSCAN2Q63HK3 967 aa14.18□□□□□ -0.14
PTPRF-203ENST00000372407 NGEFQ8N5V2 710 aa14.18□□□□□ -0.14
PTPRF-203ENST00000372407 FANCIQ9NVI1 1328 aa14.18□□□□□ -0.14
PTPRF-203ENST00000372407 TPM4P67936 248 aa14.18□□□□□ -0.14
PTPRF-203ENST00000372407 BCL2L13Q9BXK5 485 aa14.18□□□□□ -0.14
PTPRF-203ENST00000372407 USP47Q96K76 1375 aa14.18□□□□□ -0.14
PTPRF-203ENST00000372407 PLB1Q6P1J6 1458 aa14.18□□□□□ -0.14
PTPRF-203ENST00000372407 NGDNQ8NEJ9 315 aaKnown RBP14.18□□□□□ -0.14
PTPRF-203ENST00000372407 ISY1Q9ULR0 285 aaKnown RBP14.18□□□□□ -0.14
PTPRF-203ENST00000372407 HECW1Q76N89 1606 aa14.17□□□□□ -0.14
PTPRF-203ENST00000372407 CD109Q6YHK3 1445 aa14.17□□□□□ -0.14
PTPRF-203ENST00000372407 NCOA2Q15596 1464 aa14.17□□□□□ -0.14
PTPRF-203ENST00000372407 PHF14O94880 888 aa14.17□□□□□ -0.14
PTPRF-203ENST00000372407 AMPHP49418 695 aa14.17□□□□□ -0.14
PTPRF-203ENST00000372407 CRBNQ96SW2 442 aa14.17□□□□□ -0.14
PTPRF-203ENST00000372407 LRRC9Q6ZRR7 1453 aa14.17□□□□□ -0.14
PTPRF-203ENST00000372407 EIF4G3O43432 1585 aaKnown RBP14.16□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 76.7 ms