RNA–Protein interactions for RNA: ENST00000372405.1

PTPRF-202, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 1,962 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-202ENST00000372405 PPRC1Q5VV67 1664 aaKnown RBP19.79■□□□□ 0.76
PTPRF-202ENST00000372405 EIF2AK4Q9P2K8 1649 aaKnown RBP19.78■□□□□ 0.76
PTPRF-202ENST00000372405 MLH3Q9UHC1 1453 aa19.78■□□□□ 0.76
PTPRF-202ENST00000372405 FAM69CQ0P6D2 419 aa19.78■□□□□ 0.76
PTPRF-202ENST00000372405 DHX29Q7Z478 1369 aaKnown RBP19.78■□□□□ 0.76
PTPRF-202ENST00000372405 RICTORQ6R327 1708 aa19.78■□□□□ 0.76
PTPRF-202ENST00000372405 MROH1Q8NDA8 1641 aa19.76■□□□□ 0.75
PTPRF-202ENST00000372405 TSPOAP1O95153 1857 aa19.75■□□□□ 0.75
PTPRF-202ENST00000372405 PLA2R1Q13018 1463 aa19.75■□□□□ 0.75
PTPRF-202ENST00000372405 MYT1LQ9UL68 1186 aa19.75■□□□□ 0.75
PTPRF-202ENST00000372405 ABCA6Q8N139 1617 aa19.75■□□□□ 0.75
PTPRF-202ENST00000372405 RAPGEF3O95398 923 aa19.75■□□□□ 0.75
PTPRF-202ENST00000372405 KIF13AQ9H1H9 1805 aa19.75■□□□□ 0.75
PTPRF-202ENST00000372405 FRMPD1Q5SYB0 1578 aa19.74■□□□□ 0.75
PTPRF-202ENST00000372405 VWDEQ8N2E2 1590 aa19.74■□□□□ 0.75
PTPRF-202ENST00000372405 PRDM15P57071 1507 aaPredicted RBP19.72■□□□□ 0.75
PTPRF-202ENST00000372405 A2MP01023 1474 aa19.72■□□□□ 0.75
PTPRF-202ENST00000372405 E9PCH4 1651 aa19.72■□□□□ 0.75
PTPRF-202ENST00000372405 KIF3BO15066 747 aa19.7■□□□□ 0.74
PTPRF-202ENST00000372405 NBPF8Q3BBV2 869 aa19.7■□□□□ 0.74
PTPRF-202ENST00000372405 RNF17Q9BXT8 1623 aaKnown RBP19.69■□□□□ 0.74
PTPRF-202ENST00000372405 ATP10AO60312 1499 aa19.69■□□□□ 0.74
PTPRF-202ENST00000372405 DIP2CQ9Y2E4 1556 aa19.69■□□□□ 0.74
PTPRF-202ENST00000372405 TET3O43151 1660 aa19.69■□□□□ 0.74
PTPRF-202ENST00000372405 BCORL1Q5H9F3 1711 aa19.67■□□□□ 0.74
PTPRF-202ENST00000372405 HIRIP3Q9BW71 556 aaPredicted RBP19.66■□□□□ 0.74
PTPRF-202ENST00000372405 CCDC144AA2RUR9 1427 aa19.66■□□□□ 0.74
PTPRF-202ENST00000372405 ZMYM4Q5VZL5 1548 aa19.64■□□□□ 0.73
PTPRF-202ENST00000372405 KANK1Q14678 1352 aa19.63■□□□□ 0.73
PTPRF-202ENST00000372405 YEATS2Q9ULM3 1422 aa19.63■□□□□ 0.73
PTPRF-202ENST00000372405 SPHKAPQ2M3C7 1700 aa19.63■□□□□ 0.73
PTPRF-202ENST00000372405 CEP152O94986 1710 aa19.62■□□□□ 0.73
PTPRF-202ENST00000372405 PTPRTO14522 1441 aa19.6■□□□□ 0.73
PTPRF-202ENST00000372405 UHRF1BP1Q6BDS2 1440 aa19.6■□□□□ 0.73
PTPRF-202ENST00000372405 TRPM2O94759 1503 aa19.6■□□□□ 0.73
PTPRF-202ENST00000372405 EFCAB6Q5THR3 1501 aa19.6■□□□□ 0.73
PTPRF-202ENST00000372405 LMTK2Q8IWU2 1503 aa19.6■□□□□ 0.73
PTPRF-202ENST00000372405 CLTCL1P53675 1640 aa19.57■□□□□ 0.72
PTPRF-202ENST00000372405 MIER1Q8N108 512 aa19.56■□□□□ 0.72
PTPRF-202ENST00000372405 COL17A1Q9UMD9 1497 aaPredicted RBP19.56■□□□□ 0.72
PTPRF-202ENST00000372405 HSPA5P11021 654 aaKnown RBP19.55■□□□□ 0.72
PTPRF-202ENST00000372405 DCAF11Q8TEB1 546 aa19.54■□□□□ 0.72
PTPRF-202ENST00000372405 SPATA31E1Q6ZUB1 1445 aa19.54■□□□□ 0.72
PTPRF-202ENST00000372405 ZNF326Q5BKZ1 582 aaKnown RBP19.53■□□□□ 0.72
PTPRF-202ENST00000372405 GGT6Q6P531 493 aa19.53■□□□□ 0.72
PTPRF-202ENST00000372405 ABCC3O15438 1527 aa19.53■□□□□ 0.72
PTPRF-202ENST00000372405 EIF4G2P78344 907 aaKnown RBP eCLIP19.52■□□□□ 0.725e-7■■■■■ 27
PTPRF-202ENST00000372405 KDM2AQ9Y2K7 1162 aa19.52■□□□□ 0.72
PTPRF-202ENST00000372405 RALGAPBQ86X10 1494 aa19.52■□□□□ 0.72
PTPRF-202ENST00000372405 RGL3Q3MIN7 710 aa19.52■□□□□ 0.71
PTPRF-202ENST00000372405 UGGT1Q9NYU2 1555 aa19.5■□□□□ 0.71
PTPRF-202ENST00000372405 PRAG1Q86YV5 1406 aa19.49■□□□□ 0.71
PTPRF-202ENST00000372405 CAMSAP1Q5T5Y3 1602 aa19.49■□□□□ 0.71
PTPRF-202ENST00000372405 NPATQ14207 1427 aa19.49■□□□□ 0.71
PTPRF-202ENST00000372405 SIGLEC1Q9BZZ2 1709 aa19.48■□□□□ 0.71
PTPRF-202ENST00000372405 TRPM1Q7Z4N2 1603 aa19.48■□□□□ 0.71
PTPRF-202ENST00000372405 CFAP65Q6ZU64 1925 aaKnown RBP19.48■□□□□ 0.71
PTPRF-202ENST00000372405 REREQ9P2R6 1566 aa19.48■□□□□ 0.71
PTPRF-202ENST00000372405 DDX10Q13206 875 aaKnown RBP19.48■□□□□ 0.71
PTPRF-202ENST00000372405 WASHC2CQ9Y4E1 1318 aa19.46■□□□□ 0.71
PTPRF-202ENST00000372405 ZC3H13Q5T200 1668 aaKnown RBP19.45■□□□□ 0.7
PTPRF-202ENST00000372405 NEURL4Q96JN8 1562 aa19.44■□□□□ 0.7
PTPRF-202ENST00000372405 ARHGEF40Q8TER5 1519 aa19.44■□□□□ 0.7
PTPRF-202ENST00000372405 WASHC2AQ641Q2 1341 aa19.43■□□□□ 0.7
PTPRF-202ENST00000372405 USP47Q96K76 1375 aa19.43■□□□□ 0.7
PTPRF-202ENST00000372405 KIF1BO60333 1816 aa19.43■□□□□ 0.7
PTPRF-202ENST00000372405 C11orf95C9JLR9 678 aaPredicted RBP19.43■□□□□ 0.7
PTPRF-202ENST00000372405 MROH2AA6NES4 1674 aa19.42■□□□□ 0.7
PTPRF-202ENST00000372405 AGLP35573 1532 aa19.42■□□□□ 0.7
PTPRF-202ENST00000372405 POLR1AO95602 1720 aaPredicted RBP19.42■□□□□ 0.7
PTPRF-202ENST00000372405 MADDQ8WXG6 1647 aa19.4■□□□□ 0.7
PTPRF-202ENST00000372405 ARHGAP31Q2M1Z3 1444 aa19.39■□□□□ 0.69
PTPRF-202ENST00000372405 CNTLNQ9NXG0 1405 aa19.39■□□□□ 0.69
PTPRF-202ENST00000372405 CARD11Q9BXL7 1154 aa19.39■□□□□ 0.69
PTPRF-202ENST00000372405 NOS1P29475 1434 aa19.38■□□□□ 0.69
PTPRF-202ENST00000372405 SYNMO15061 1565 aa19.38■□□□□ 0.69
PTPRF-202ENST00000372405 IFT172Q9UG01 1749 aa19.38■□□□□ 0.69
PTPRF-202ENST00000372405 ROCK2O75116 1388 aaKnown RBP19.38■□□□□ 0.69
PTPRF-202ENST00000372405 GPRASP1Q5JY77 1395 aa19.37■□□□□ 0.69
PTPRF-202ENST00000372405 NBPF1Q3BBV0 1214 aa19.37■□□□□ 0.69
PTPRF-202ENST00000372405 ADGRB3O60242 1522 aa19.37■□□□□ 0.69
PTPRF-202ENST00000372405 PIK3C2BO00750 1634 aa19.36■□□□□ 0.69
PTPRF-202ENST00000372405 LAMC1P11047 1609 aa19.36■□□□□ 0.69
PTPRF-202ENST00000372405 CCDC7Q96M83 1385 aa19.36■□□□□ 0.69
PTPRF-202ENST00000372405 PREX1Q8TCU6 1659 aa19.33■□□□□ 0.69
PTPRF-202ENST00000372405 KIF7Q2M1P5 1343 aa19.33■□□□□ 0.68
PTPRF-202ENST00000372405 CLTCQ00610 1675 aaKnown RBP19.31■□□□□ 0.68
PTPRF-202ENST00000372405 MYOM2P54296 1465 aa19.31■□□□□ 0.68
PTPRF-202ENST00000372405 STAC3Q96MF2 364 aa19.3■□□□□ 0.68
PTPRF-202ENST00000372405 PPLO60437 1756 aa19.29■□□□□ 0.68
PTPRF-202ENST00000372405 ST20-MTHFSA0A0A6YYL1 179 aa19.29■□□□□ 0.68
PTPRF-202ENST00000372405 DNAJC5Q9H3Z4 198 aa19.28■□□□□ 0.68
PTPRF-202ENST00000372405 KIAA1210Q9ULL0 1709 aa19.28■□□□□ 0.68
PTPRF-202ENST00000372405 PPP6R1Q9UPN7 881 aa19.27■□□□□ 0.68
PTPRF-202ENST00000372405 NRXN1Q9ULB1 1477 aa19.27■□□□□ 0.68
PTPRF-202ENST00000372405 IQGAP1P46940 1657 aa19.26■□□□□ 0.67
PTPRF-202ENST00000372405 ADGRF5Q8IZF2 1346 aa19.26■□□□□ 0.67
PTPRF-202ENST00000372405 TRHP20396 242 aaPredicted RBP19.26■□□□□ 0.67
PTPRF-202ENST00000372405 ERVK-7P63135 1459 aa19.25■□□□□ 0.67
PTPRF-202ENST00000372405 MYO5BQ9ULV0 1848 aa19.24■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms