RNA–Protein interactions for RNA: ENST00000372189.7

RAPGEF1-201, Transcript of Rap guanine nucleotide exchange factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene RAPGEF1, Length 6,085 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAPGEF1-201ENST00000372189 MEX3CQ5U5Q3 659 aaKnown RBP16.81■□□□□ 0.28
RAPGEF1-201ENST00000372189 SYNJ2O15056 1496 aa16.81■□□□□ 0.28
RAPGEF1-201ENST00000372189 KCNJ4P48050 445 aa16.8■□□□□ 0.28
RAPGEF1-201ENST00000372189 TPRNQ4KMQ1 711 aa16.8■□□□□ 0.28
RAPGEF1-201ENST00000372189 MSNP26038 577 aaKnown RBP16.8■□□□□ 0.28
RAPGEF1-201ENST00000372189 LTV1Q96GA3 475 aaPredicted RBP16.8■□□□□ 0.28
RAPGEF1-201ENST00000372189 TOPBP1Q92547 1522 aa16.8■□□□□ 0.28
RAPGEF1-201ENST00000372189 ZNF526Q8TF50 670 aaPredicted RBP16.79■□□□□ 0.28
RAPGEF1-201ENST00000372189 PLCB2Q00722 1185 aa16.79■□□□□ 0.28
RAPGEF1-201ENST00000372189 ARHGAP5Q13017 1502 aa16.79■□□□□ 0.28
RAPGEF1-201ENST00000372189 EVC2Q86UK5 1308 aa16.79■□□□□ 0.28
RAPGEF1-201ENST00000372189 FGD1P98174 961 aa16.78■□□□□ 0.28
RAPGEF1-201ENST00000372189 TSHZ2Q9NRE2 1034 aa16.78■□□□□ 0.28
RAPGEF1-201ENST00000372189 HSP90AA2PQ14568 343 aaPredicted RBP16.78■□□□□ 0.28
RAPGEF1-201ENST00000372189 TMX4Q9H1E5 349 aaPredicted RBP16.78■□□□□ 0.28
RAPGEF1-201ENST00000372189 CHAF1AQ13111 956 aaPredicted RBP16.77■□□□□ 0.28
RAPGEF1-201ENST00000372189 SNAPC4Q5SXM2 1469 aa16.77■□□□□ 0.27
RAPGEF1-201ENST00000372189 KIF15Q9NS87 1388 aa16.77■□□□□ 0.27
RAPGEF1-201ENST00000372189 STK31Q9BXU1 1019 aa16.76■□□□□ 0.27
RAPGEF1-201ENST00000372189 ZNF644Q9H582 1327 aaPredicted RBP16.75■□□□□ 0.27
RAPGEF1-201ENST00000372189 SETQ01105 290 aaPredicted RBP16.75■□□□□ 0.27
RAPGEF1-201ENST00000372189 EVA1CP58658 441 aa16.75■□□□□ 0.27
RAPGEF1-201ENST00000372189 COG3Q96JB2 828 aa16.75■□□□□ 0.27
RAPGEF1-201ENST00000372189 CASKIN1Q8WXD9 1431 aa16.75■□□□□ 0.27
RAPGEF1-201ENST00000372189 MINK1Q8N4C8 1332 aaPredicted RBP16.75■□□□□ 0.27
RAPGEF1-201ENST00000372189 NRDCO43847 1150 aa16.74■□□□□ 0.27
RAPGEF1-201ENST00000372189 LMOD3Q0VAK6 560 aa16.74■□□□□ 0.27
RAPGEF1-201ENST00000372189 TCERG1O14776 1098 aaKnown RBP16.73■□□□□ 0.27
RAPGEF1-201ENST00000372189 FGD6Q6ZV73 1430 aa16.73■□□□□ 0.27
RAPGEF1-201ENST00000372189 TAOK2Q9UL54 1235 aa16.73■□□□□ 0.27
RAPGEF1-201ENST00000372189 NEFHP12036 1026 aa16.73■□□□□ 0.27
RAPGEF1-201ENST00000372189 ST20-MTHFSA0A0A6YYL1 179 aa16.73■□□□□ 0.27
RAPGEF1-201ENST00000372189 PATL2C9JE40 543 aaKnown RBP16.73■□□□□ 0.27
RAPGEF1-201ENST00000372189 NAP1L2Q9ULW6 460 aaPredicted RBP16.73■□□□□ 0.27
RAPGEF1-201ENST00000372189 POLA1P09884 1462 aaPredicted RBP16.72■□□□□ 0.27
RAPGEF1-201ENST00000372189 CFAP44Q96MT7 982 aa16.72■□□□□ 0.27
RAPGEF1-201ENST00000372189 SYNJ1O43426 1573 aa16.72■□□□□ 0.27
RAPGEF1-201ENST00000372189 FYCO1Q9BQS8 1478 aa16.72■□□□□ 0.27
RAPGEF1-201ENST00000372189 TULP1O00294 542 aaPredicted RBP16.72■□□□□ 0.27
RAPGEF1-201ENST00000372189 DNMBPQ6XZF7 1577 aa16.71■□□□□ 0.27
RAPGEF1-201ENST00000372189 KIF21BO75037 1637 aa16.7■□□□□ 0.26
RAPGEF1-201ENST00000372189 CGNL1Q0VF96 1302 aa16.7■□□□□ 0.26
RAPGEF1-201ENST00000372189 ERICH3Q5RHP9 1530 aa16.69■□□□□ 0.26
RAPGEF1-201ENST00000372189 PSME1Q06323 249 aa16.69■□□□□ 0.26
RAPGEF1-201ENST00000372189 ITPRIPQ8IWB1 547 aa16.69■□□□□ 0.26
RAPGEF1-201ENST00000372189 PANK3Q9H999 370 aa16.69■□□□□ 0.26
RAPGEF1-201ENST00000372189 LRRC9Q6ZRR7 1453 aa16.68■□□□□ 0.26
RAPGEF1-201ENST00000372189 NLRP13Q86W25 1043 aa16.68■□□□□ 0.26
RAPGEF1-201ENST00000372189 CCDC146Q8IYE0 955 aa16.68■□□□□ 0.26
RAPGEF1-201ENST00000372189 NCOA2Q15596 1464 aa16.68■□□□□ 0.26
RAPGEF1-201ENST00000372189 AFAP1Q8N556 730 aa16.68■□□□□ 0.26
RAPGEF1-201ENST00000372189 APBB1O00213 710 aa16.67■□□□□ 0.26
RAPGEF1-201ENST00000372189 RSPH6AQ9H0K4 717 aa16.67■□□□□ 0.26
RAPGEF1-201ENST00000372189 ATF3P18847 181 aa16.67■□□□□ 0.26
RAPGEF1-201ENST00000372189 IPO9Q96P70 1041 aaKnown RBP16.67■□□□□ 0.26
RAPGEF1-201ENST00000372189 TOP2BQ02880 1626 aa16.67■□□□□ 0.26
RAPGEF1-201ENST00000372189 MCCP23508 829 aa16.67■□□□□ 0.26
RAPGEF1-201ENST00000372189 C1orf141Q5JVX7 400 aa16.67■□□□□ 0.26
RAPGEF1-201ENST00000372189 GBP4Q96PP9 640 aa16.67■□□□□ 0.26
RAPGEF1-201ENST00000372189 SPRYD3Q8NCJ5 442 aa16.66■□□□□ 0.26
RAPGEF1-201ENST00000372189 HDAC5Q9UQL6 1122 aa16.66■□□□□ 0.26
RAPGEF1-201ENST00000372189 GOLGA6L4A6NEF3 574 aa16.66■□□□□ 0.26
RAPGEF1-201ENST00000372189 CHMP3Q9Y3E7 222 aa16.66■□□□□ 0.26
RAPGEF1-201ENST00000372189 DHX57Q6P158 1386 aaKnown RBP16.66■□□□□ 0.26
RAPGEF1-201ENST00000372189 TAF7LQ5H9L4 462 aa16.66■□□□□ 0.26
RAPGEF1-201ENST00000372189 RCAN3Q9UKA8 241 aa16.66■□□□□ 0.26
RAPGEF1-201ENST00000372189 LAMC3Q9Y6N6 1575 aa16.66■□□□□ 0.26
RAPGEF1-201ENST00000372189 PHLDB1Q86UU1 1377 aa16.66■□□□□ 0.26
RAPGEF1-201ENST00000372189 ANKRD50Q9ULJ7 1429 aa16.65■□□□□ 0.26
RAPGEF1-201ENST00000372189 SMC4Q9NTJ3 1288 aa16.65■□□□□ 0.26
RAPGEF1-201ENST00000372189 EFCAB5A4FU69 1503 aa16.64■□□□□ 0.25
RAPGEF1-201ENST00000372189 ISY1Q9ULR0 285 aaKnown RBP16.64■□□□□ 0.25
RAPGEF1-201ENST00000372189 USP47Q96K76 1375 aa16.63■□□□□ 0.25
RAPGEF1-201ENST00000372189 STAC3Q96MF2 364 aa16.63■□□□□ 0.25
RAPGEF1-201ENST00000372189 GORABQ5T7V8 394 aa16.62■□□□□ 0.25
RAPGEF1-201ENST00000372189 ARID3AQ99856 593 aa16.62■□□□□ 0.25
RAPGEF1-201ENST00000372189 DNAJC5BQ9UF47 199 aa16.61■□□□□ 0.25
RAPGEF1-201ENST00000372189 MYBBP1AQ9BQG0 1328 aaKnown RBP16.61■□□□□ 0.25
RAPGEF1-201ENST00000372189 PLEKHH2Q8IVE3 1493 aa16.61■□□□□ 0.25
RAPGEF1-201ENST00000372189 G3V3G9 751 aa16.61■□□□□ 0.25
RAPGEF1-201ENST00000372189 GTF2E1P29083 439 aaPredicted RBP16.61■□□□□ 0.25
RAPGEF1-201ENST00000372189 DCAF8Q5TAQ9 597 aa16.61■□□□□ 0.25
RAPGEF1-201ENST00000372189 RWDD1Q9H446 243 aaPredicted RBP16.61■□□□□ 0.25
RAPGEF1-201ENST00000372189 SLC4A10Q6U841 1118 aa16.6■□□□□ 0.25
RAPGEF1-201ENST00000372189 DRC7Q8IY82 874 aa16.6■□□□□ 0.25
RAPGEF1-201ENST00000372189 BICRAQ9NZM4 1560 aa16.6■□□□□ 0.25
RAPGEF1-201ENST00000372189 KIAA1211Q6ZU35 1233 aa16.59■□□□□ 0.25
RAPGEF1-201ENST00000372189 CENPJQ9HC77 1338 aaPredicted RBP16.59■□□□□ 0.25
RAPGEF1-201ENST00000372189 GOLGA6L3A6NEY3 463 aa16.58■□□□□ 0.25
RAPGEF1-201ENST00000372189 GPATCH3Q96I76 525 aa16.58■□□□□ 0.24
RAPGEF1-201ENST00000372189 HECW1Q76N89 1606 aa16.58■□□□□ 0.24
RAPGEF1-201ENST00000372189 HMMRO75330 724 aa16.57■□□□□ 0.24
RAPGEF1-201ENST00000372189 KIAA2012Q0VF49 1180 aa16.57■□□□□ 0.24
RAPGEF1-201ENST00000372189 TXNDC2Q86VQ3 553 aa16.56■□□□□ 0.24
RAPGEF1-201ENST00000372189 SLKQ9H2G2 1235 aaPredicted RBP16.56■□□□□ 0.24
RAPGEF1-201ENST00000372189 EHBP1L1Q8N3D4 1523 aa16.56■□□□□ 0.24
RAPGEF1-201ENST00000372189 TEFQ10587 303 aa16.56■□□□□ 0.24
RAPGEF1-201ENST00000372189 GZF1Q9H116 711 aaPredicted RBP16.56■□□□□ 0.24
RAPGEF1-201ENST00000372189 RRP7AQ9Y3A4 280 aaKnown RBP16.56■□□□□ 0.24
RAPGEF1-201ENST00000372189 TTC5Q8N0Z6 440 aa16.55■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 49.4 ms