RNA–Protein interactions for RNA: ENST00000368020.5

USF1-202, Transcript of upstream transcription factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USF1, Length 1,717 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF1-202ENST00000368020 COL17A1Q9UMD9 1497 aaPredicted RBP19.78■□□□□ 0.76
USF1-202ENST00000368020 KIF15Q9NS87 1388 aa19.78■□□□□ 0.76
USF1-202ENST00000368020 HECW2Q9P2P5 1572 aa19.78■□□□□ 0.76
USF1-202ENST00000368020 MAGI2Q86UL8 1455 aa19.77■□□□□ 0.76
USF1-202ENST00000368020 KIDINS220Q9ULH0 1771 aa19.77■□□□□ 0.76
USF1-202ENST00000368020 DUOX2Q9NRD8 1548 aa19.74■□□□□ 0.75
USF1-202ENST00000368020 DDX10Q13206 875 aaKnown RBP19.73■□□□□ 0.75
USF1-202ENST00000368020 GTF3C3Q9Y5Q9 886 aa19.73■□□□□ 0.75
USF1-202ENST00000368020 L3MBTL2Q969R5 705 aa19.72■□□□□ 0.75
USF1-202ENST00000368020 EIF4G2P78344 907 aaKnown RBP eCLIP19.71■□□□□ 0.75
USF1-202ENST00000368020 MYT1LQ9UL68 1186 aa19.71■□□□□ 0.75
USF1-202ENST00000368020 ERBINQ96RT1 1412 aa19.7■□□□□ 0.74
USF1-202ENST00000368020 POLR1AO95602 1720 aaPredicted RBP19.69■□□□□ 0.74
USF1-202ENST00000368020 DHX29Q7Z478 1369 aaKnown RBP19.69■□□□□ 0.74
USF1-202ENST00000368020 CCER2I3L3R5 266 aa19.69■□□□□ 0.74
USF1-202ENST00000368020 ANP32CO43423 234 aa19.68■□□□□ 0.74
USF1-202ENST00000368020 FOXD1Q16676 465 aa19.68■□□□□ 0.74
USF1-202ENST00000368020 NUP155O75694 1391 aa19.68■□□□□ 0.74
USF1-202ENST00000368020 UNC13BO14795 1591 aa19.67■□□□□ 0.74
USF1-202ENST00000368020 ABCA6Q8N139 1617 aa19.67■□□□□ 0.74
USF1-202ENST00000368020 DIP2CQ9Y2E4 1556 aa19.66■□□□□ 0.74
USF1-202ENST00000368020 A2MP01023 1474 aa19.66■□□□□ 0.74
USF1-202ENST00000368020 YEATS2Q9ULM3 1422 aa19.65■□□□□ 0.74
USF1-202ENST00000368020 PKD2Q13563 968 aa19.65■□□□□ 0.74
USF1-202ENST00000368020 ATP10AO60312 1499 aa19.64■□□□□ 0.73
USF1-202ENST00000368020 HSPA5P11021 654 aaKnown RBP19.63■□□□□ 0.73
USF1-202ENST00000368020 EIF2AK4Q9P2K8 1649 aaKnown RBP19.63■□□□□ 0.73
USF1-202ENST00000368020 REREQ9P2R6 1566 aa19.63■□□□□ 0.73
USF1-202ENST00000368020 FAM135AQ9P2D6 1515 aa19.62■□□□□ 0.73
USF1-202ENST00000368020 ARHGEF40Q8TER5 1519 aa19.61■□□□□ 0.73
USF1-202ENST00000368020 HIRIP3Q9BW71 556 aaPredicted RBP19.61■□□□□ 0.73
USF1-202ENST00000368020 BCORL1Q5H9F3 1711 aa19.6■□□□□ 0.73
USF1-202ENST00000368020 IQGAP3Q86VI3 1631 aa19.6■□□□□ 0.73
USF1-202ENST00000368020 UHRF1BP1Q6BDS2 1440 aa19.59■□□□□ 0.73
USF1-202ENST00000368020 AGLP35573 1532 aa19.57■□□□□ 0.72
USF1-202ENST00000368020 KIF3BO15066 747 aa19.56■□□□□ 0.72
USF1-202ENST00000368020 SPATA31E1Q6ZUB1 1445 aa19.56■□□□□ 0.72
USF1-202ENST00000368020 DEPDC5O75140 1603 aa19.56■□□□□ 0.72
USF1-202ENST00000368020 NBPF8Q3BBV2 869 aa19.54■□□□□ 0.72
USF1-202ENST00000368020 CNTLNQ9NXG0 1405 aa19.54■□□□□ 0.72
USF1-202ENST00000368020 RNF17Q9BXT8 1623 aaKnown RBP19.54■□□□□ 0.72
USF1-202ENST00000368020 WASHC2AQ641Q2 1341 aa19.54■□□□□ 0.72
USF1-202ENST00000368020 RALGAPBQ86X10 1494 aa19.53■□□□□ 0.72
USF1-202ENST00000368020 CCDC7Q96M83 1385 aa19.52■□□□□ 0.72
USF1-202ENST00000368020 PRDM15P57071 1507 aaPredicted RBP19.52■□□□□ 0.71
USF1-202ENST00000368020 ARID4BQ4LE39 1312 aaPredicted RBP19.5■□□□□ 0.71
USF1-202ENST00000368020 VWDEQ8N2E2 1590 aa19.49■□□□□ 0.71
USF1-202ENST00000368020 KANK1Q14678 1352 aa19.49■□□□□ 0.71
USF1-202ENST00000368020 MROH1Q8NDA8 1641 aa19.49■□□□□ 0.71
USF1-202ENST00000368020 PPP6R1Q9UPN7 881 aa19.49■□□□□ 0.71
USF1-202ENST00000368020 CCDC144AA2RUR9 1427 aa19.49■□□□□ 0.71
USF1-202ENST00000368020 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.47■□□□□ 0.71
USF1-202ENST00000368020 GGT6Q6P531 493 aa19.45■□□□□ 0.7
USF1-202ENST00000368020 USP47Q96K76 1375 aa19.45■□□□□ 0.7
USF1-202ENST00000368020 SIGLEC1Q9BZZ2 1709 aa19.44■□□□□ 0.7
USF1-202ENST00000368020 LMTK2Q8IWU2 1503 aa19.44■□□□□ 0.7
USF1-202ENST00000368020 LAMC1P11047 1609 aa19.41■□□□□ 0.7
USF1-202ENST00000368020 ROCK2O75116 1388 aaKnown RBP19.41■□□□□ 0.7
USF1-202ENST00000368020 TET3O43151 1660 aa19.4■□□□□ 0.7
USF1-202ENST00000368020 WASHC2CQ9Y4E1 1318 aa19.4■□□□□ 0.7
USF1-202ENST00000368020 ZC3H13Q5T200 1668 aaKnown RBP19.4■□□□□ 0.7
USF1-202ENST00000368020 KIF7Q2M1P5 1343 aa19.4■□□□□ 0.7
USF1-202ENST00000368020 PELP1Q8IZL8 1130 aaKnown RBP19.39■□□□□ 0.7
USF1-202ENST00000368020 TRPM1Q7Z4N2 1603 aa19.39■□□□□ 0.69
USF1-202ENST00000368020 ABCC3O15438 1527 aa19.39■□□□□ 0.69
USF1-202ENST00000368020 PLA2R1Q13018 1463 aa19.36■□□□□ 0.69
USF1-202ENST00000368020 ZNF326Q5BKZ1 582 aaKnown RBP19.36■□□□□ 0.69
USF1-202ENST00000368020 EFCAB6Q5THR3 1501 aa19.35■□□□□ 0.69
USF1-202ENST00000368020 CEP152O94986 1710 aa19.35■□□□□ 0.69
USF1-202ENST00000368020 ARHGAP31Q2M1Z3 1444 aa19.35■□□□□ 0.69
USF1-202ENST00000368020 PRAG1Q86YV5 1406 aa19.35■□□□□ 0.69
USF1-202ENST00000368020 DCAF11Q8TEB1 546 aa19.34■□□□□ 0.69
USF1-202ENST00000368020 CARD11Q9BXL7 1154 aa19.34■□□□□ 0.69
USF1-202ENST00000368020 C11orf95C9JLR9 678 aaPredicted RBP19.34■□□□□ 0.69
USF1-202ENST00000368020 E9PCH4 1651 aa19.33■□□□□ 0.69
USF1-202ENST00000368020 SPHKAPQ2M3C7 1700 aa19.33■□□□□ 0.68
USF1-202ENST00000368020 TRPM2O94759 1503 aa19.32■□□□□ 0.68
USF1-202ENST00000368020 MLECQ14165 292 aa19.32■□□□□ 0.68
USF1-202ENST00000368020 STAC3Q96MF2 364 aa19.31■□□□□ 0.68
USF1-202ENST00000368020 PRKRIP1Q9H875 184 aaPredicted RBP19.31■□□□□ 0.68
USF1-202ENST00000368020 CAMSAP1Q5T5Y3 1602 aa19.31■□□□□ 0.68
USF1-202ENST00000368020 GPRASP1Q5JY77 1395 aa19.31■□□□□ 0.68
USF1-202ENST00000368020 NPATQ14207 1427 aa19.3■□□□□ 0.68
USF1-202ENST00000368020 NEURL4Q96JN8 1562 aa19.3■□□□□ 0.68
USF1-202ENST00000368020 ESF1Q9H501 851 aaKnown RBP19.3■□□□□ 0.68
USF1-202ENST00000368020 PTPRTO14522 1441 aa19.3■□□□□ 0.68
USF1-202ENST00000368020 CLTCQ00610 1675 aaKnown RBP19.27■□□□□ 0.68
USF1-202ENST00000368020 KDM2AQ9Y2K7 1162 aa19.27■□□□□ 0.68
USF1-202ENST00000368020 MROH2AA6NES4 1674 aa19.26■□□□□ 0.67
USF1-202ENST00000368020 KTN1Q86UP2 1357 aaKnown RBP19.25■□□□□ 0.67
USF1-202ENST00000368020 ZMYM3Q14202 1370 aa19.25■□□□□ 0.67
USF1-202ENST00000368020 NOS1P29475 1434 aa19.24■□□□□ 0.67
USF1-202ENST00000368020 FER1L4A9Z1Z3 1794 aa19.22■□□□□ 0.67
USF1-202ENST00000368020 CFAP65Q6ZU64 1925 aaKnown RBP19.22■□□□□ 0.67
USF1-202ENST00000368020 SUPT16HQ9Y5B9 1047 aaKnown RBP19.22■□□□□ 0.67
USF1-202ENST00000368020 ADAMTSL3P82987 1691 aa19.22■□□□□ 0.67
USF1-202ENST00000368020 ST20-MTHFSA0A0A6YYL1 179 aa19.2■□□□□ 0.66
USF1-202ENST00000368020 MADDQ8WXG6 1647 aa19.19■□□□□ 0.66
USF1-202ENST00000368020 RGL3Q3MIN7 710 aa19.19■□□□□ 0.66
USF1-202ENST00000368020 KIAA1210Q9ULL0 1709 aa19.19■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 48.6 ms