RNA–Protein interactions for RNA: ENST00000367257.8

SYNE1-209, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5

Gene SYNE1, Length 5,022 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-209ENST00000367257 DRC7Q8IY82 874 aa11.15□□□□□ -0.62
SYNE1-209ENST00000367257 ANKRD30AQ9BXX3 1397 aa11.15□□□□□ -0.62
SYNE1-209ENST00000367257 GOLGA2Q08379 1002 aa11.15□□□□□ -0.63
SYNE1-209ENST00000367257 RCAN3Q9UKA8 241 aa11.15□□□□□ -0.63
SYNE1-209ENST00000367257 IFT140Q96RY7 1462 aa11.14□□□□□ -0.63
SYNE1-209ENST00000367257 RAD54L2Q9Y4B4 1467 aa11.14□□□□□ -0.63
SYNE1-209ENST00000367257 DDX11L8A8MPP1 907 aa11.14□□□□□ -0.63
SYNE1-209ENST00000367257 ZNF771Q7L3S4 317 aaPredicted RBP11.14□□□□□ -0.63
SYNE1-209ENST00000367257 RTF1Q92541 710 aaKnown RBP11.14□□□□□ -0.63
SYNE1-209ENST00000367257 ZMYND15Q9H091 742 aa11.14□□□□□ -0.63
SYNE1-209ENST00000367257 SKOR2Q2VWA4 1001 aaPredicted RBP11.14□□□□□ -0.63
SYNE1-209ENST00000367257 HIRIP3Q9BW71 556 aaPredicted RBP11.14□□□□□ -0.63
SYNE1-209ENST00000367257 MTERF4Q7Z6M4 381 aaKnown RBP11.13□□□□□ -0.63
SYNE1-209ENST00000367257 U2SURPO15042 1029 aaKnown RBP11.12□□□□□ -0.63
SYNE1-209ENST00000367257 PDIA4P13667 645 aaKnown RBP11.12□□□□□ -0.63
SYNE1-209ENST00000367257 AAMPQ13685 434 aa11.12□□□□□ -0.63
SYNE1-209ENST00000367257 FAM43AQ8N2R8 423 aa11.12□□□□□ -0.63
SYNE1-209ENST00000367257 GOLGA6L1Q8N7Z2 621 aa11.12□□□□□ -0.63
SYNE1-209ENST00000367257 KCNH8Q96L42 1107 aa11.12□□□□□ -0.63
SYNE1-209ENST00000367257 CEP170Q5SW79 1584 aa11.12□□□□□ -0.63
SYNE1-209ENST00000367257 PLEKHG5O94827 1062 aa11.11□□□□□ -0.63
SYNE1-209ENST00000367257 HSPA5P11021 654 aaKnown RBP11.11□□□□□ -0.63
SYNE1-209ENST00000367257 GNL2Q13823 731 aaKnown RBP11.1□□□□□ -0.63
SYNE1-209ENST00000367257 DCAF11Q8TEB1 546 aa11.1□□□□□ -0.63
SYNE1-209ENST00000367257 TPM2P07951 284 aa11.1□□□□□ -0.63
SYNE1-209ENST00000367257 CC2D1BQ5T0F9 858 aaKnown RBP11.1□□□□□ -0.63
SYNE1-209ENST00000367257 NLRP13Q86W25 1043 aa11.1□□□□□ -0.63
SYNE1-209ENST00000367257 UACAQ9BZF9 1416 aa11.09□□□□□ -0.63
SYNE1-209ENST00000367257 NEUROD2Q15784 382 aa11.09□□□□□ -0.63
SYNE1-209ENST00000367257 FAM13BQ9NYF5 915 aa11.09□□□□□ -0.63
SYNE1-209ENST00000367257 ZBTB7CA1YPR0 619 aa11.09□□□□□ -0.63
SYNE1-209ENST00000367257 ATP6V1DQ9Y5K8 247 aa11.09□□□□□ -0.63
SYNE1-209ENST00000367257 SPAG9O60271 1321 aaKnown RBP11.09□□□□□ -0.63
SYNE1-209ENST00000367257 SIN3AQ96ST3 1273 aa11.08□□□□□ -0.64
SYNE1-209ENST00000367257 KIF15Q9NS87 1388 aa11.08□□□□□ -0.64
SYNE1-209ENST00000367257 ST18O60284 1047 aa11.07□□□□□ -0.64
SYNE1-209ENST00000367257 GZF1Q9H116 711 aaPredicted RBP11.07□□□□□ -0.64
SYNE1-209ENST00000367257 CCDC18Q5T9S5 1454 aa11.07□□□□□ -0.64
SYNE1-209ENST00000367257 IGF1RP08069 1367 aa11.06□□□□□ -0.64
SYNE1-209ENST00000367257 STAC3Q96MF2 364 aa11.06□□□□□ -0.64
SYNE1-209ENST00000367257 TERF2IPQ9NYB0 399 aa11.06□□□□□ -0.64
SYNE1-209ENST00000367257 STK31Q9BXU1 1019 aa11.06□□□□□ -0.64
SYNE1-209ENST00000367257 CENPQQ7L2Z9 268 aaPredicted RBP11.06□□□□□ -0.64
SYNE1-209ENST00000367257 SRPK2P78362 688 aaKnown RBP11.05□□□□□ -0.64
SYNE1-209ENST00000367257 PDZRN4Q6ZMN7 1036 aaPredicted RBP11.05□□□□□ -0.64
SYNE1-209ENST00000367257 SETQ01105 290 aaPredicted RBP11.04□□□□□ -0.64
SYNE1-209ENST00000367257 NAP1L2Q9ULW6 460 aaPredicted RBP11.04□□□□□ -0.64
SYNE1-209ENST00000367257 TAF7LQ5H9L4 462 aa11.04□□□□□ -0.64
SYNE1-209ENST00000367257 NUP160Q12769 1436 aa11.04□□□□□ -0.64
SYNE1-209ENST00000367257 A0A0G2JS52 829 aa11.04□□□□□ -0.64
SYNE1-209ENST00000367257 RAB3GAP2Q9H2M9 1393 aa11.04□□□□□ -0.64
SYNE1-209ENST00000367257 GPS2Q13227 327 aa11.03□□□□□ -0.64
SYNE1-209ENST00000367257 BRPF3Q9ULD4 1205 aa11.03□□□□□ -0.64
SYNE1-209ENST00000367257 MAGI1Q96QZ7 1491 aaPredicted RBP11.03□□□□□ -0.64
SYNE1-209ENST00000367257 NPHP1O15259 732 aa11.03□□□□□ -0.64
SYNE1-209ENST00000367257 EFCAB2Q5VUJ9 269 aa11.03□□□□□ -0.64
SYNE1-209ENST00000367257 LRRFIP1Q32MZ4 808 aaKnown RBP11.02□□□□□ -0.64
SYNE1-209ENST00000367257 CENPJQ9HC77 1338 aaPredicted RBP11.02□□□□□ -0.64
SYNE1-209ENST00000367257 PKD2Q13563 968 aa11.02□□□□□ -0.64
SYNE1-209ENST00000367257 CGNL1Q0VF96 1302 aa11.02□□□□□ -0.65
SYNE1-209ENST00000367257 MYBBP1AQ9BQG0 1328 aaKnown RBP11.02□□□□□ -0.65
SYNE1-209ENST00000367257 CCDC66A2RUB6 948 aa11.02□□□□□ -0.65
SYNE1-209ENST00000367257 TPM3P06753 285 aa11.02□□□□□ -0.65
SYNE1-209ENST00000367257 MPHOSPH9Q99550 1183 aa11.02□□□□□ -0.65
SYNE1-209ENST00000367257 KIF16BQ96L93 1317 aa11.01□□□□□ -0.65
SYNE1-209ENST00000367257 TAF3Q5VWG9 929 aa11.01□□□□□ -0.65
SYNE1-209ENST00000367257 ITPRIPQ8IWB1 547 aa11.01□□□□□ -0.65
SYNE1-209ENST00000367257 NOC3LQ8WTT2 800 aaKnown RBP11.01□□□□□ -0.65
SYNE1-209ENST00000367257 RAPGEF2Q9Y4G8 1499 aa11.01□□□□□ -0.65
SYNE1-209ENST00000367257 UGGT2Q9NYU1 1516 aa11□□□□□ -0.65
SYNE1-209ENST00000367257 ROCK1Q13464 1354 aa11□□□□□ -0.65
SYNE1-209ENST00000367257 WWC1Q8IX03 1113 aa11□□□□□ -0.65
SYNE1-209ENST00000367257 CCDC70Q6NSX1 233 aa11□□□□□ -0.65
SYNE1-209ENST00000367257 PLPPR3Q6T4P5 718 aa10.99□□□□□ -0.65
SYNE1-209ENST00000367257 GAPVD1Q14C86 1478 aa10.99□□□□□ -0.65
SYNE1-209ENST00000367257 FAM161AQ3B820 660 aa10.99□□□□□ -0.65
SYNE1-209ENST00000367257 NUP155O75694 1391 aa10.99□□□□□ -0.65
SYNE1-209ENST00000367257 ZBED9Q6R2W3 1325 aa10.98□□□□□ -0.65
SYNE1-209ENST00000367257 U2AF1L5P0DN76 240 aaPredicted RBP10.98□□□□□ -0.65
SYNE1-209ENST00000367257 U2AF1Q01081 240 aaKnown RBP eCLIP10.98□□□□□ -0.65
SYNE1-209ENST00000367257 BBXQ8WY36 941 aaPredicted RBP10.98□□□□□ -0.65
SYNE1-209ENST00000367257 E9PSI1 815 aa10.98□□□□□ -0.65
SYNE1-209ENST00000367257 TPM1P09493 284 aa10.97□□□□□ -0.65
SYNE1-209ENST00000367257 SMC4Q9NTJ3 1288 aa10.97□□□□□ -0.65
SYNE1-209ENST00000367257 CFAP43Q8NDM7 1665 aa10.97□□□□□ -0.65
SYNE1-209ENST00000367257 SLKQ9H2G2 1235 aaPredicted RBP10.97□□□□□ -0.65
SYNE1-209ENST00000367257 RBM10P98175 930 aaKnown RBP10.96□□□□□ -0.65
SYNE1-209ENST00000367257 GRIN2BQ13224 1484 aa10.96□□□□□ -0.65
SYNE1-209ENST00000367257 PATL2C9JE40 543 aaKnown RBP10.96□□□□□ -0.66
SYNE1-209ENST00000367257 TMX4Q9H1E5 349 aaPredicted RBP10.96□□□□□ -0.66
SYNE1-209ENST00000367257 DHX8Q14562 1220 aaKnown RBP10.95□□□□□ -0.66
SYNE1-209ENST00000367257 NOM1Q5C9Z4 860 aaKnown RBP10.95□□□□□ -0.66
SYNE1-209ENST00000367257 DISP1Q96F81 1524 aa10.95□□□□□ -0.66
SYNE1-209ENST00000367257 TSR1Q2NL82 804 aaKnown RBP10.95□□□□□ -0.66
SYNE1-209ENST00000367257 RUFY2Q8WXA3 655 aa10.95□□□□□ -0.66
SYNE1-209ENST00000367257 CEP89Q96ST8 783 aa10.94□□□□□ -0.66
SYNE1-209ENST00000367257 REC8O95072 547 aa10.94□□□□□ -0.66
SYNE1-209ENST00000367257 GRIN2AQ12879 1464 aa10.94□□□□□ -0.66
SYNE1-209ENST00000367257 HOOK1Q9UJC3 728 aaKnown RBP10.93□□□□□ -0.66
SYNE1-209ENST00000367257 SYNJ2O15056 1496 aa10.93□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms