RNA–Protein interactions for RNA: ENST00000367253.8

SYNE1-206, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 5,189 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-206ENST00000367253 TOPBP1Q92547 1522 aa10.9□□□□□ -0.66
SYNE1-206ENST00000367253 DNAJC5BQ9UF47 199 aa10.9□□□□□ -0.66
SYNE1-206ENST00000367253 PSME1Q06323 249 aa10.9□□□□□ -0.66
SYNE1-206ENST00000367253 GOLGA6L6A8MZA4 724 aa10.9□□□□□ -0.66
SYNE1-206ENST00000367253 L1TD1Q5T7N2 865 aaKnown RBP10.9□□□□□ -0.66
SYNE1-206ENST00000367253 AMOTL1Q8IY63 956 aa10.9□□□□□ -0.66
SYNE1-206ENST00000367253 CUX1P39880 1505 aa10.9□□□□□ -0.67
SYNE1-206ENST00000367253 VPS8Q8N3P4 1428 aa10.9□□□□□ -0.67
SYNE1-206ENST00000367253 MSNP26038 577 aaKnown RBP10.89□□□□□ -0.67
SYNE1-206ENST00000367253 DDX10Q13206 875 aaKnown RBP10.89□□□□□ -0.67
SYNE1-206ENST00000367253 NEUROD2Q15784 382 aa10.89□□□□□ -0.67
SYNE1-206ENST00000367253 MRC2Q9UBG0 1479 aa10.89□□□□□ -0.67
SYNE1-206ENST00000367253 DNMBPQ6XZF7 1577 aa10.89□□□□□ -0.67
SYNE1-206ENST00000367253 TOM1O60784 492 aa10.89□□□□□ -0.67
SYNE1-206ENST00000367253 GORABQ5T7V8 394 aa10.89□□□□□ -0.67
SYNE1-206ENST00000367253 GAPVD1Q14C86 1478 aa10.88□□□□□ -0.67
SYNE1-206ENST00000367253 TCEAL9Q9UHQ7 104 aa10.88□□□□□ -0.67
SYNE1-206ENST00000367253 PLCD4Q9BRC7 762 aa10.88□□□□□ -0.67
SYNE1-206ENST00000367253 BEGAINQ9BUH8 593 aa10.87□□□□□ -0.67
SYNE1-206ENST00000367253 SPAG9O60271 1321 aaKnown RBP10.87□□□□□ -0.67
SYNE1-206ENST00000367253 PROSER2Q86WR7 435 aaPredicted RBP10.87□□□□□ -0.67
SYNE1-206ENST00000367253 MS4A1P11836 297 aa10.86□□□□□ -0.67
SYNE1-206ENST00000367253 PLCB2Q00722 1185 aa10.86□□□□□ -0.67
SYNE1-206ENST00000367253 PDE3BQ13370 1112 aa10.86□□□□□ -0.67
SYNE1-206ENST00000367253 RAD54L2Q9Y4B4 1467 aa10.86□□□□□ -0.67
SYNE1-206ENST00000367253 CALD1Q05682 793 aaKnown RBP10.86□□□□□ -0.67
SYNE1-206ENST00000367253 AMPHP49418 695 aa10.86□□□□□ -0.67
SYNE1-206ENST00000367253 CC2D1BQ5T0F9 858 aaKnown RBP10.86□□□□□ -0.67
SYNE1-206ENST00000367253 POLA1P09884 1462 aaPredicted RBP10.85□□□□□ -0.67
SYNE1-206ENST00000367253 KIF3BO15066 747 aa10.85□□□□□ -0.67
SYNE1-206ENST00000367253 PLCD3Q8N3E9 789 aa10.85□□□□□ -0.67
SYNE1-206ENST00000367253 SYTL4Q96C24 671 aaPredicted RBP10.85□□□□□ -0.67
SYNE1-206ENST00000367253 STK26Q9P289 416 aa10.85□□□□□ -0.67
SYNE1-206ENST00000367253 NBPF8Q3BBV2 869 aa10.84□□□□□ -0.67
SYNE1-206ENST00000367253 NBPF14Q5TI25 921 aa10.84□□□□□ -0.67
SYNE1-206ENST00000367253 KCNJ4P48050 445 aa10.84□□□□□ -0.67
SYNE1-206ENST00000367253 RBM33Q96EV2 1170 aaKnown RBP10.84□□□□□ -0.67
SYNE1-206ENST00000367253 MRS2Q9HD23 443 aa10.84□□□□□ -0.67
SYNE1-206ENST00000367253 ERICH3Q5RHP9 1530 aa10.84□□□□□ -0.67
SYNE1-206ENST00000367253 THEMISQ8N1K5 641 aaPredicted RBP10.84□□□□□ -0.67
SYNE1-206ENST00000367253 SMC4Q9NTJ3 1288 aa10.84□□□□□ -0.67
SYNE1-206ENST00000367253 NAP1L2Q9ULW6 460 aaPredicted RBP10.84□□□□□ -0.67
SYNE1-206ENST00000367253 FMN1Q68DA7 1419 aa10.83□□□□□ -0.67
SYNE1-206ENST00000367253 KIF21BO75037 1637 aa10.83□□□□□ -0.68
SYNE1-206ENST00000367253 IFT140Q96RY7 1462 aa10.83□□□□□ -0.68
SYNE1-206ENST00000367253 PRXQ9BXM0 1461 aa10.82□□□□□ -0.68
SYNE1-206ENST00000367253 TERF2IPQ9NYB0 399 aa10.82□□□□□ -0.68
SYNE1-206ENST00000367253 C1orf141Q5JVX7 400 aa10.81□□□□□ -0.68
SYNE1-206ENST00000367253 ZNF771Q7L3S4 317 aaPredicted RBP10.81□□□□□ -0.68
SYNE1-206ENST00000367253 ABCA10Q8WWZ4 1543 aa10.81□□□□□ -0.68
SYNE1-206ENST00000367253 GRIN2BQ13224 1484 aa10.8□□□□□ -0.68
SYNE1-206ENST00000367253 U2SURPO15042 1029 aaKnown RBP10.8□□□□□ -0.68
SYNE1-206ENST00000367253 TTC5Q8N0Z6 440 aa10.8□□□□□ -0.68
SYNE1-206ENST00000367253 PRDM10Q9NQV6 1147 aa10.8□□□□□ -0.68
SYNE1-206ENST00000367253 RRP7BPQ9NSQ0 103 aa10.8□□□□□ -0.68
SYNE1-206ENST00000367253 JPH4Q96JJ6 628 aa10.79□□□□□ -0.68
SYNE1-206ENST00000367253 MIER1Q8N108 512 aa10.79□□□□□ -0.68
SYNE1-206ENST00000367253 BIVM-ERCC5R4GMW8 1640 aa10.79□□□□□ -0.68
SYNE1-206ENST00000367253 WWC2Q6AWC2 1192 aa10.79□□□□□ -0.68
SYNE1-206ENST00000367253 ANKLE2Q86XL3 938 aa10.79□□□□□ -0.68
SYNE1-206ENST00000367253 GOLGA6L1Q8N7Z2 621 aa10.79□□□□□ -0.68
SYNE1-206ENST00000367253 UBAP1LF5GYI3 381 aa10.78□□□□□ -0.68
SYNE1-206ENST00000367253 HNRNPMP52272 730 aaKnown RBP eCLIP10.77□□□□□ -0.68
SYNE1-206ENST00000367253 FAM193AP78312 1265 aa10.77□□□□□ -0.69
SYNE1-206ENST00000367253 CCDC34Q96HJ3 373 aa10.77□□□□□ -0.69
SYNE1-206ENST00000367253 NGLY1Q96IV0 654 aa10.77□□□□□ -0.69
SYNE1-206ENST00000367253 MARCH6O60337 910 aa10.77□□□□□ -0.69
SYNE1-206ENST00000367253 FBXW7Q969H0 707 aa10.76□□□□□ -0.69
SYNE1-206ENST00000367253 SAFB2Q14151 953 aaKnown RBP eCLIP10.76□□□□□ -0.69
SYNE1-206ENST00000367253 E9PSI1 815 aa10.76□□□□□ -0.69
SYNE1-206ENST00000367253 VPS53Q5VIR6 699 aa10.75□□□□□ -0.69
SYNE1-206ENST00000367253 STK31Q9BXU1 1019 aa10.75□□□□□ -0.69
SYNE1-206ENST00000367253 CHMP3Q9Y3E7 222 aa10.75□□□□□ -0.69
SYNE1-206ENST00000367253 PTPRGP23470 1445 aa10.75□□□□□ -0.69
SYNE1-206ENST00000367253 AQRO60306 1485 aaKnown RBP eCLIP10.75□□□□□ -0.69
SYNE1-206ENST00000367253 IRX3P78415 501 aaPredicted RBP10.75□□□□□ -0.69
SYNE1-206ENST00000367253 FTSJ3Q8IY81 847 aaKnown RBP10.75□□□□□ -0.69
SYNE1-206ENST00000367253 VGFO15240 615 aaPredicted RBP10.75□□□□□ -0.69
SYNE1-206ENST00000367253 TMF1P82094 1093 aa10.74□□□□□ -0.69
SYNE1-206ENST00000367253 RAPGEF4Q8WZA2 1011 aa10.74□□□□□ -0.69
SYNE1-206ENST00000367253 URB2Q14146 1524 aaKnown RBP10.74□□□□□ -0.69
SYNE1-206ENST00000367253 PPP4R2Q9NY27 417 aa10.74□□□□□ -0.69
SYNE1-206ENST00000367253 R3HCC1Q9Y3T6 440 aaKnown RBP10.74□□□□□ -0.69
SYNE1-206ENST00000367253 GPRASP1Q5JY77 1395 aa10.74□□□□□ -0.69
SYNE1-206ENST00000367253 KIAA2012Q0VF49 1180 aa10.74□□□□□ -0.69
SYNE1-206ENST00000367253 POLD1P28340 1107 aa10.73□□□□□ -0.69
SYNE1-206ENST00000367253 RBM19Q9Y4C8 960 aaKnown RBP10.73□□□□□ -0.69
SYNE1-206ENST00000367253 SETQ01105 290 aaPredicted RBP10.73□□□□□ -0.69
SYNE1-206ENST00000367253 TMEM87AQ8NBN3 555 aa10.73□□□□□ -0.69
SYNE1-206ENST00000367253 TAF3Q5VWG9 929 aa10.73□□□□□ -0.69
SYNE1-206ENST00000367253 CARD11Q9BXL7 1154 aa10.73□□□□□ -0.69
SYNE1-206ENST00000367253 GNL2Q13823 731 aaKnown RBP10.73□□□□□ -0.69
SYNE1-206ENST00000367253 VPS37DQ86XT2 251 aa10.73□□□□□ -0.69
SYNE1-206ENST00000367253 LRRFIP1Q32MZ4 808 aaKnown RBP10.72□□□□□ -0.69
SYNE1-206ENST00000367253 HSP90AB1P08238 724 aaKnown RBP10.72□□□□□ -0.69
SYNE1-206ENST00000367253 RBM25P49756 843 aaKnown RBP10.72□□□□□ -0.69
SYNE1-206ENST00000367253 FBXO3Q9UK99 471 aa10.72□□□□□ -0.69
SYNE1-206ENST00000367253 GOLGA6L3A6NEY3 463 aa10.71□□□□□ -0.69
SYNE1-206ENST00000367253 RRP9O43818 475 aaKnown RBP10.71□□□□□ -0.69
SYNE1-206ENST00000367253 SSR1P43307 286 aaKnown RBP10.71□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms