RNA–Protein interactions for RNA: ENST00000357517.6

PCDH1-202, Transcript of protocadherin 1, humanhuman

TSL 2

Gene PCDH1, Length 3,307 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-202ENST00000357517 ZSCAN30Q86W11 494 aa13.26□□□□□ -0.29
PCDH1-202ENST00000357517 MAP3K1Q13233 1512 aa13.26□□□□□ -0.29
PCDH1-202ENST00000357517 DNTTIP2Q5QJE6 756 aaKnown RBP13.26□□□□□ -0.29
PCDH1-202ENST00000357517 MPNDQ8N594 471 aa13.25□□□□□ -0.29
PCDH1-202ENST00000357517 MAP7D2Q96T17 732 aa13.25□□□□□ -0.29
PCDH1-202ENST00000357517 CGNQ9P2M7 1197 aaKnown RBP13.25□□□□□ -0.29
PCDH1-202ENST00000357517 NASPP49321 788 aaPredicted RBP13.24□□□□□ -0.29
PCDH1-202ENST00000357517 CC2D1BQ5T0F9 858 aaKnown RBP13.24□□□□□ -0.29
PCDH1-202ENST00000357517 RSPH4AQ5TD94 716 aa13.24□□□□□ -0.29
PCDH1-202ENST00000357517 ZFP91Q96JP5 570 aaPredicted RBP13.24□□□□□ -0.29
PCDH1-202ENST00000357517 ERICH3Q5RHP9 1530 aa13.24□□□□□ -0.29
PCDH1-202ENST00000357517 SPDYE4A6NLX3 237 aa13.23□□□□□ -0.29
PCDH1-202ENST00000357517 IGHDP01880 384 aa13.23□□□□□ -0.29
PCDH1-202ENST00000357517 MFAP1P55081 439 aaKnown RBP13.23□□□□□ -0.29
PCDH1-202ENST00000357517 DMTNQ08495 405 aa13.23□□□□□ -0.29
PCDH1-202ENST00000357517 ARHGAP35Q9NRY4 1499 aa13.22□□□□□ -0.29
PCDH1-202ENST00000357517 KIF27Q86VH2 1401 aa13.22□□□□□ -0.29
PCDH1-202ENST00000357517 TMEM51Q9NW97 253 aa13.22□□□□□ -0.29
PCDH1-202ENST00000357517 CHMP5Q9NZZ3 219 aa13.22□□□□□ -0.29
PCDH1-202ENST00000357517 ZSCAN20P17040 1043 aaPredicted RBP13.21□□□□□ -0.29
PCDH1-202ENST00000357517 CERS3Q8IU89 383 aa13.21□□□□□ -0.29
PCDH1-202ENST00000357517 DHX29Q7Z478 1369 aaKnown RBP13.21□□□□□ -0.29
PCDH1-202ENST00000357517 UACAQ9BZF9 1416 aa13.21□□□□□ -0.29
PCDH1-202ENST00000357517 PDE3BQ13370 1112 aa13.19□□□□□ -0.3
PCDH1-202ENST00000357517 NCBP3Q53F19 620 aaKnown RBP13.19□□□□□ -0.3
PCDH1-202ENST00000357517 MPHOSPH9Q99550 1183 aa13.19□□□□□ -0.3
PCDH1-202ENST00000357517 LRRC9Q6ZRR7 1453 aa13.19□□□□□ -0.3
PCDH1-202ENST00000357517 AEBP1Q8IUX7 1158 aa13.18□□□□□ -0.3
PCDH1-202ENST00000357517 KDM2AQ9Y2K7 1162 aa13.18□□□□□ -0.3
PCDH1-202ENST00000357517 MYBBP1AQ9BQG0 1328 aaKnown RBP13.18□□□□□ -0.3
PCDH1-202ENST00000357517 DDX11L8A8MPP1 907 aa13.18□□□□□ -0.3
PCDH1-202ENST00000357517 FTSJ3Q8IY81 847 aaKnown RBP13.18□□□□□ -0.3
PCDH1-202ENST00000357517 BRD2P25440 801 aaKnown RBP13.17□□□□□ -0.3
PCDH1-202ENST00000357517 CCDC173Q0VFZ6 552 aa13.17□□□□□ -0.3
PCDH1-202ENST00000357517 BCAR3O75815 825 aa13.17□□□□□ -0.3
PCDH1-202ENST00000357517 PANK3Q9H999 370 aa13.17□□□□□ -0.3
PCDH1-202ENST00000357517 CCDC94Q9BW85 323 aaPredicted RBP13.16□□□□□ -0.3
PCDH1-202ENST00000357517 GOLGA6L2Q8N9W4 650 aaPredicted RBP13.16□□□□□ -0.3
PCDH1-202ENST00000357517 BIVM-ERCC5R4GMW8 1640 aa13.16□□□□□ -0.3
PCDH1-202ENST00000357517 PTPRKQ15262 1439 aa13.15□□□□□ -0.3
PCDH1-202ENST00000357517 COG6Q9Y2V7 657 aa13.15□□□□□ -0.3
PCDH1-202ENST00000357517 ZNF771Q7L3S4 317 aaPredicted RBP13.15□□□□□ -0.3
PCDH1-202ENST00000357517 CUX1P39880 1505 aa13.15□□□□□ -0.3
PCDH1-202ENST00000357517 ARID3CA6NKF2 412 aa13.15□□□□□ -0.31
PCDH1-202ENST00000357517 HAP1P54257 671 aaPredicted RBP13.15□□□□□ -0.31
PCDH1-202ENST00000357517 HSCBQ8IWL3 235 aa13.15□□□□□ -0.31
PCDH1-202ENST00000357517 TNPO1Q92973 898 aaKnown RBP13.14□□□□□ -0.31
PCDH1-202ENST00000357517 DDX49Q9Y6V7 483 aaKnown RBP13.14□□□□□ -0.31
PCDH1-202ENST00000357517 KDM5BQ9UGL1 1544 aa13.13□□□□□ -0.31
PCDH1-202ENST00000357517 SECISBP2LQ93073 1101 aaKnown RBP13.13□□□□□ -0.31
PCDH1-202ENST00000357517 ZBTB9Q96C00 473 aa13.13□□□□□ -0.31
PCDH1-202ENST00000357517 PTMAP06454 111 aaKnown RBP13.13□□□□□ -0.31
PCDH1-202ENST00000357517 PANK1Q8TE04 598 aa13.13□□□□□ -0.31
PCDH1-202ENST00000357517 TBC1D32Q96NH3 1257 aa13.13□□□□□ -0.31
PCDH1-202ENST00000357517 NLRP13Q86W25 1043 aa13.12□□□□□ -0.31
PCDH1-202ENST00000357517 DYNC1I1O14576 645 aa13.12□□□□□ -0.31
PCDH1-202ENST00000357517 HSP90AB1P08238 724 aaKnown RBP13.12□□□□□ -0.31
PCDH1-202ENST00000357517 SLC4A1APQ9BWU0 796 aaKnown RBP13.12□□□□□ -0.31
PCDH1-202ENST00000357517 FMN1Q68DA7 1419 aa13.12□□□□□ -0.31
PCDH1-202ENST00000357517 ATP2B3Q16720 1220 aa13.11□□□□□ -0.31
PCDH1-202ENST00000357517 UTP14CQ5TAP6 766 aaKnown RBP13.11□□□□□ -0.31
PCDH1-202ENST00000357517 TRERF1Q96PN7 1200 aa13.11□□□□□ -0.31
PCDH1-202ENST00000357517 USP47Q96K76 1375 aa13.11□□□□□ -0.31
PCDH1-202ENST00000357517 TPRNQ4KMQ1 711 aa13.11□□□□□ -0.31
PCDH1-202ENST00000357517 MTERF4Q7Z6M4 381 aaKnown RBP13.11□□□□□ -0.31
PCDH1-202ENST00000357517 CARD11Q9BXL7 1154 aa13.11□□□□□ -0.31
PCDH1-202ENST00000357517 C22orf23Q9BZE7 217 aa13.11□□□□□ -0.31
PCDH1-202ENST00000357517 TIAM1Q13009 1591 aa13.11□□□□□ -0.31
PCDH1-202ENST00000357517 ST20-MTHFSA0A0A6YYL1 179 aa13.1□□□□□ -0.31
PCDH1-202ENST00000357517 RNF214Q8ND24 703 aa13.1□□□□□ -0.31
PCDH1-202ENST00000357517 CCDC146Q8IYE0 955 aa13.1□□□□□ -0.31
PCDH1-202ENST00000357517 GBP4Q96PP9 640 aa13.1□□□□□ -0.31
PCDH1-202ENST00000357517 LRPPRCP42704 1394 aaKnown RBP13.09□□□□□ -0.31
PCDH1-202ENST00000357517 KIF15Q9NS87 1388 aa13.09□□□□□ -0.31
PCDH1-202ENST00000357517 KCNJ4P48050 445 aa13.09□□□□□ -0.31
PCDH1-202ENST00000357517 RALBP1Q15311 655 aa13.09□□□□□ -0.31
PCDH1-202ENST00000357517 CAVIN1Q6NZI2 390 aaKnown RBP13.09□□□□□ -0.31
PCDH1-202ENST00000357517 ADAMTS8Q9UP79 889 aa13.09□□□□□ -0.31
PCDH1-202ENST00000357517 CLUAP1Q96AJ1 413 aa13.08□□□□□ -0.31
PCDH1-202ENST00000357517 BRD4O60885 1362 aaPredicted RBP13.08□□□□□ -0.32
PCDH1-202ENST00000357517 NAIPQ13075 1403 aa13.08□□□□□ -0.32
PCDH1-202ENST00000357517 MTUS2Q5JR59 1369 aa13.08□□□□□ -0.32
PCDH1-202ENST00000357517 SASS6Q6UVJ0 657 aa13.07□□□□□ -0.32
PCDH1-202ENST00000357517 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP13.07□□□□□ -0.32
PCDH1-202ENST00000357517 KIF20AO95235 890 aa13.07□□□□□ -0.32
PCDH1-202ENST00000357517 WDR43Q15061 677 aaKnown RBP eCLIP13.07□□□□□ -0.32
PCDH1-202ENST00000357517 BCL2L13Q9BXK5 485 aa13.06□□□□□ -0.32
PCDH1-202ENST00000357517 HFM1A2PYH4 1435 aa13.05□□□□□ -0.32
PCDH1-202ENST00000357517 LETM1O95202 739 aaPredicted RBP13.05□□□□□ -0.32
PCDH1-202ENST00000357517 DUSP27Q5VZP5 1158 aa13.05□□□□□ -0.32
PCDH1-202ENST00000357517 C17orf53Q8N3J3 647 aaPredicted RBP13.05□□□□□ -0.32
PCDH1-202ENST00000357517 PPP1R9BQ96SB3 815 aa13.05□□□□□ -0.32
PCDH1-202ENST00000357517 ISY1Q9ULR0 285 aaKnown RBP13.05□□□□□ -0.32
PCDH1-202ENST00000357517 MAPK8IP3Q9UPT6 1336 aa13.05□□□□□ -0.32
PCDH1-202ENST00000357517 GOLGA2Q08379 1002 aa13.05□□□□□ -0.32
PCDH1-202ENST00000357517 GTPBP4Q9BZE4 634 aaKnown RBP13.05□□□□□ -0.32
PCDH1-202ENST00000357517 NOL7Q9UMY1 257 aaKnown RBP13.05□□□□□ -0.32
PCDH1-202ENST00000357517 PDZRN3Q9UPQ7 1066 aa13.05□□□□□ -0.32
PCDH1-202ENST00000357517 IGF1RP08069 1367 aa13.04□□□□□ -0.32
PCDH1-202ENST00000357517 GOLGA6L22H0YM25 854 aa13.04□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms