RNA–Protein interactions for RNA: ENST00000357376.7

RTN4-203, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 4,110 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-203ENST00000357376 PTPRGP23470 1445 aa8.85□□□□□ -0.99
RTN4-203ENST00000357376 CAMSAP2Q08AD1 1489 aa8.84□□□□□ -0.99
RTN4-203ENST00000357376 LAMC3Q9Y6N6 1575 aa8.84□□□□□ -0.99
RTN4-203ENST00000357376 SAFB2Q14151 953 aaKnown RBP eCLIP8.84□□□□□ -0.998e-8■■■□□ 19.2
RTN4-203ENST00000357376 BECN1Q14457 450 aa8.84□□□□□ -0.99
RTN4-203ENST00000357376 RSPH4AQ5TD94 716 aa8.84□□□□□ -0.99
RTN4-203ENST00000357376 APAF1O14727 1248 aa8.83□□□□□ -1
RTN4-203ENST00000357376 EFCAB2Q5VUJ9 269 aa8.83□□□□□ -1
RTN4-203ENST00000357376 MAGI3Q5TCQ9 1506 aa8.83□□□□□ -1
RTN4-203ENST00000357376 HSP90AA1P07900 732 aaKnown RBP8.83□□□□□ -1
RTN4-203ENST00000357376 KIF3BO15066 747 aa8.83□□□□□ -1
RTN4-203ENST00000357376 MORC1Q86VD1 984 aa8.83□□□□□ -1
RTN4-203ENST00000357376 FTSJ3Q8IY81 847 aaKnown RBP8.83□□□□□ -1
RTN4-203ENST00000357376 SPRYD3Q8NCJ5 442 aa8.83□□□□□ -1
RTN4-203ENST00000357376 SLKQ9H2G2 1235 aaPredicted RBP8.83□□□□□ -1
RTN4-203ENST00000357376 ZNF608Q9ULD9 1512 aaPredicted RBP8.83□□□□□ -1
RTN4-203ENST00000357376 RRP7AQ9Y3A4 280 aaKnown RBP8.83□□□□□ -1
RTN4-203ENST00000357376 KIAA0586Q9BVV6 1533 aa8.83□□□□□ -1
RTN4-203ENST00000357376 CLUAP1Q96AJ1 413 aa8.82□□□□□ -1
RTN4-203ENST00000357376 CFAP53Q96M91 514 aa8.82□□□□□ -1
RTN4-203ENST00000357376 MRC2Q9UBG0 1479 aa8.82□□□□□ -1
RTN4-203ENST00000357376 TCOF1Q13428 1488 aaKnown RBP8.82□□□□□ -1
RTN4-203ENST00000357376 U2SURPO15042 1029 aaKnown RBP8.82□□□□□ -1
RTN4-203ENST00000357376 MS4A1P11836 297 aa8.82□□□□□ -1
RTN4-203ENST00000357376 BCL2L13Q9BXK5 485 aa8.82□□□□□ -1
RTN4-203ENST00000357376 NPM1P06748 294 aaKnown RBP eCLIP8.81□□□□□ -1
RTN4-203ENST00000357376 CENPQQ7L2Z9 268 aaPredicted RBP8.81□□□□□ -1
RTN4-203ENST00000357376 STAG3Q9UJ98 1225 aa8.81□□□□□ -1
RTN4-203ENST00000357376 SPAG9O60271 1321 aaKnown RBP8.81□□□□□ -1
RTN4-203ENST00000357376 BACH2Q9BYV9 841 aa8.8□□□□□ -1
RTN4-203ENST00000357376 ARHGEF11O15085 1522 aa8.8□□□□□ -1
RTN4-203ENST00000357376 KDM6BO15054 1643 aa8.8□□□□□ -1
RTN4-203ENST00000357376 ZBTB4Q9P1Z0 1013 aaPredicted RBP8.8□□□□□ -1
RTN4-203ENST00000357376 FAM161AQ3B820 660 aa8.8□□□□□ -1
RTN4-203ENST00000357376 C20orf194Q5TEA3 1177 aa8.8□□□□□ -1
RTN4-203ENST00000357376 NUTM2DQ5VT03 806 aaPredicted RBP8.8□□□□□ -1
RTN4-203ENST00000357376 DHX29Q7Z478 1369 aaKnown RBP8.8□□□□□ -1
RTN4-203ENST00000357376 GGT6Q6P531 493 aa8.79□□□□□ -1
RTN4-203ENST00000357376 COG6Q9Y2V7 657 aa8.79□□□□□ -1
RTN4-203ENST00000357376 KANK1Q14678 1352 aa8.79□□□□□ -1
RTN4-203ENST00000357376 NUP153P49790 1475 aaKnown RBP8.79□□□□□ -1
RTN4-203ENST00000357376 IFT140Q96RY7 1462 aa8.79□□□□□ -1
RTN4-203ENST00000357376 TRAK1Q9UPV9 953 aa8.79□□□□□ -1
RTN4-203ENST00000357376 CENPJQ9HC77 1338 aaPredicted RBP8.78□□□□□ -1
RTN4-203ENST00000357376 PPP2R1AP30153 589 aa8.78□□□□□ -1
RTN4-203ENST00000357376 TEX14Q8IWB6 1497 aa8.78□□□□□ -1
RTN4-203ENST00000357376 U2AF1L5P0DN76 240 aaPredicted RBP8.78□□□□□ -1
RTN4-203ENST00000357376 U2AF1Q01081 240 aaKnown RBP eCLIP8.78□□□□□ -14e-6■□□□□ 9.4
RTN4-203ENST00000357376 GPATCH8Q9UKJ3 1502 aaKnown RBP8.78□□□□□ -1
RTN4-203ENST00000357376 SLC24A1O60721 1099 aa8.77□□□□□ -1.01
RTN4-203ENST00000357376 IL27Q8NEV9 243 aa8.77□□□□□ -1.01
RTN4-203ENST00000357376 SAMD9Q5K651 1589 aa8.77□□□□□ -1.01
RTN4-203ENST00000357376 USP35Q9P2H5 1018 aa8.77□□□□□ -1.01
RTN4-203ENST00000357376 MAPK8IP3Q9UPT6 1336 aa8.77□□□□□ -1.01
RTN4-203ENST00000357376 STK26Q9P289 416 aa8.77□□□□□ -1.01
RTN4-203ENST00000357376 GRIN2AQ12879 1464 aa8.76□□□□□ -1.01
RTN4-203ENST00000357376 AFAP1Q8N556 730 aa8.76□□□□□ -1.01
RTN4-203ENST00000357376 WDR62O43379 1518 aa8.76□□□□□ -1.01
RTN4-203ENST00000357376 EIF3AQ14152 1382 aaKnown RBP8.76□□□□□ -1.01
RTN4-203ENST00000357376 BCAR3O75815 825 aa8.76□□□□□ -1.01
RTN4-203ENST00000357376 PZPP20742 1482 aa8.76□□□□□ -1.01
RTN4-203ENST00000357376 GSE1Q14687 1217 aa8.75□□□□□ -1.01
RTN4-203ENST00000357376 NFKBIBQ15653 356 aa8.75□□□□□ -1.01
RTN4-203ENST00000357376 PANK1Q8TE04 598 aa8.75□□□□□ -1.01
RTN4-203ENST00000357376 SRPK2P78362 688 aaKnown RBP8.75□□□□□ -1.01
RTN4-203ENST00000357376 ERBINQ96RT1 1412 aa8.75□□□□□ -1.01
RTN4-203ENST00000357376 ARHGAP5Q13017 1502 aa8.75□□□□□ -1.01
RTN4-203ENST00000357376 E9PSI1 815 aa8.75□□□□□ -1.01
RTN4-203ENST00000357376 SYNJ2O15056 1496 aa8.74□□□□□ -1.01
RTN4-203ENST00000357376 MAGI1Q96QZ7 1491 aaPredicted RBP8.74□□□□□ -1.01
RTN4-203ENST00000357376 CFAP70Q5T0N1 1121 aa8.74□□□□□ -1.01
RTN4-203ENST00000357376 GZF1Q9H116 711 aaPredicted RBP8.74□□□□□ -1.01
RTN4-203ENST00000357376 SPATA31E1Q6ZUB1 1445 aa8.74□□□□□ -1.01
RTN4-203ENST00000357376 DISP3Q9P2K9 1392 aa8.74□□□□□ -1.01
RTN4-203ENST00000357376 ABCA5Q8WWZ7 1642 aa8.73□□□□□ -1.01
RTN4-203ENST00000357376 WASHC2CQ9Y4E1 1318 aa8.73□□□□□ -1.01
RTN4-203ENST00000357376 POGKQ9P215 609 aa8.73□□□□□ -1.01
RTN4-203ENST00000357376 ITPRIPQ8IWB1 547 aa8.73□□□□□ -1.01
RTN4-203ENST00000357376 MFAP1P55081 439 aaKnown RBP8.73□□□□□ -1.01
RTN4-203ENST00000357376 DENND4BO75064 1496 aaPredicted RBP8.72□□□□□ -1.01
RTN4-203ENST00000357376 RAPGEF6Q8TEU7 1601 aa8.72□□□□□ -1.01
RTN4-203ENST00000357376 RALGAPBQ86X10 1494 aa8.72□□□□□ -1.01
RTN4-203ENST00000357376 SMC4Q9NTJ3 1288 aa8.72□□□□□ -1.01
RTN4-203ENST00000357376 RWDD1Q9H446 243 aaPredicted RBP8.72□□□□□ -1.01
RTN4-203ENST00000357376 BRPF3Q9ULD4 1205 aa8.72□□□□□ -1.01
RTN4-203ENST00000357376 CGNL1Q0VF96 1302 aa8.71□□□□□ -1.01
RTN4-203ENST00000357376 DNMT1P26358 1616 aaKnown RBP8.71□□□□□ -1.02
RTN4-203ENST00000357376 GCC2Q8IWJ2 1684 aa8.71□□□□□ -1.02
RTN4-203ENST00000357376 ADAMTS12P58397 1594 aa8.71□□□□□ -1.02
RTN4-203ENST00000357376 FRAT2O75474 233 aaPredicted RBP8.71□□□□□ -1.02
RTN4-203ENST00000357376 PMFBP1Q8TBY8 1022 aa8.71□□□□□ -1.02
RTN4-203ENST00000357376 CCDC141Q6ZP82 1450 aa8.7□□□□□ -1.02
RTN4-203ENST00000357376 MYH16Q9H6N6 1097 aa8.7□□□□□ -1.02
RTN4-203ENST00000357376 KDM5BQ9UGL1 1544 aa8.7□□□□□ -1.02
RTN4-203ENST00000357376 TMEM132EQ6IEE7 984 aa8.7□□□□□ -1.02
RTN4-203ENST00000357376 DISP1Q96F81 1524 aa8.7□□□□□ -1.02
RTN4-203ENST00000357376 KIAA0556O60303 1618 aa8.7□□□□□ -1.02
RTN4-203ENST00000357376 PLPPR3Q6T4P5 718 aa8.69□□□□□ -1.02
RTN4-203ENST00000357376 RNF123Q5XPI4 1314 aa8.69□□□□□ -1.02
RTN4-203ENST00000357376 DUSP27Q5VZP5 1158 aa8.69□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 48.1 ms