RNA–Protein interactions for RNA: ENST00000357250.10

COL9A1-202, Transcript of collagen type IX alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A1, Length 4,761 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1-202ENST00000357250 TRAK1Q9UPV9 953 aa14.78□□□□□ -0.04
COL9A1-202ENST00000357250 NCOA2Q15596 1464 aa14.78□□□□□ -0.04
COL9A1-202ENST00000357250 MYBBP1AQ9BQG0 1328 aaKnown RBP14.77□□□□□ -0.04
COL9A1-202ENST00000357250 ERICH3Q5RHP9 1530 aa14.77□□□□□ -0.04
COL9A1-202ENST00000357250 GRIN2BQ13224 1484 aa14.77□□□□□ -0.05
COL9A1-202ENST00000357250 CASKIN1Q8WXD9 1431 aa14.77□□□□□ -0.05
COL9A1-202ENST00000357250 DEKP35659 375 aaKnown RBP14.77□□□□□ -0.05
COL9A1-202ENST00000357250 OSCARQ8IYS5 282 aa14.77□□□□□ -0.05
COL9A1-202ENST00000357250 SYAP1Q96A49 352 aaPredicted RBP14.77□□□□□ -0.05
COL9A1-202ENST00000357250 STK31Q9BXU1 1019 aa14.77□□□□□ -0.05
COL9A1-202ENST00000357250 NPHP1O15259 732 aa14.76□□□□□ -0.05
COL9A1-202ENST00000357250 ITPRIPQ8IWB1 547 aa14.76□□□□□ -0.05
COL9A1-202ENST00000357250 NUTM2FA1L443 756 aa14.76□□□□□ -0.05
COL9A1-202ENST00000357250 PRDM2Q13029 1718 aa14.76□□□□□ -0.05
COL9A1-202ENST00000357250 AFAP1Q8N556 730 aa14.76□□□□□ -0.05
COL9A1-202ENST00000357250 CCDC144AA2RUR9 1427 aa14.75□□□□□ -0.05
COL9A1-202ENST00000357250 CENPJQ9HC77 1338 aaPredicted RBP14.75□□□□□ -0.05
COL9A1-202ENST00000357250 NAP1L2Q9ULW6 460 aaPredicted RBP14.74□□□□□ -0.05
COL9A1-202ENST00000357250 IPO9Q96P70 1041 aaKnown RBP14.74□□□□□ -0.05
COL9A1-202ENST00000357250 STAC3Q96MF2 364 aa14.73□□□□□ -0.05
COL9A1-202ENST00000357250 SMC4Q9NTJ3 1288 aa14.73□□□□□ -0.05
COL9A1-202ENST00000357250 UNC13AQ9UPW8 1703 aa14.72□□□□□ -0.05
COL9A1-202ENST00000357250 GPATCH3Q96I76 525 aa14.72□□□□□ -0.05
COL9A1-202ENST00000357250 TPRNQ4KMQ1 711 aa14.72□□□□□ -0.05
COL9A1-202ENST00000357250 CCDC146Q8IYE0 955 aa14.71□□□□□ -0.05
COL9A1-202ENST00000357250 PRG4Q92954 1404 aaPredicted RBP14.7□□□□□ -0.06
COL9A1-202ENST00000357250 MRC2Q9UBG0 1479 aa14.7□□□□□ -0.06
COL9A1-202ENST00000357250 CSPP1Q1MSJ5 1256 aa14.7□□□□□ -0.06
COL9A1-202ENST00000357250 ZBED9Q6R2W3 1325 aa14.7□□□□□ -0.06
COL9A1-202ENST00000357250 USP35Q9P2H5 1018 aa14.7□□□□□ -0.06
COL9A1-202ENST00000357250 KIAA2012Q0VF49 1180 aa14.69□□□□□ -0.06
COL9A1-202ENST00000357250 PANK3Q9H999 370 aa14.69□□□□□ -0.06
COL9A1-202ENST00000357250 TSHZ2Q9NRE2 1034 aa14.69□□□□□ -0.06
COL9A1-202ENST00000357250 RRBP1Q9P2E9 1410 aaKnown RBP14.68□□□□□ -0.06
COL9A1-202ENST00000357250 PRKRIP1Q9H875 184 aaPredicted RBP14.68□□□□□ -0.06
COL9A1-202ENST00000357250 EID1Q9Y6B2 187 aa14.68□□□□□ -0.06
COL9A1-202ENST00000357250 USP47Q96K76 1375 aa14.68□□□□□ -0.06
COL9A1-202ENST00000357250 CENPQQ7L2Z9 268 aaPredicted RBP14.68□□□□□ -0.06
COL9A1-202ENST00000357250 CCDC34Q96HJ3 373 aa14.68□□□□□ -0.06
COL9A1-202ENST00000357250 SNAPC4Q5SXM2 1469 aa14.68□□□□□ -0.06
COL9A1-202ENST00000357250 DRC7Q8IY82 874 aa14.67□□□□□ -0.06
COL9A1-202ENST00000357250 GNL2Q13823 731 aaKnown RBP14.66□□□□□ -0.06
COL9A1-202ENST00000357250 E9PSI1 815 aa14.66□□□□□ -0.06
COL9A1-202ENST00000357250 CGNL1Q0VF96 1302 aa14.66□□□□□ -0.06
COL9A1-202ENST00000357250 VGFO15240 615 aaPredicted RBP14.65□□□□□ -0.06
COL9A1-202ENST00000357250 ANKRD50Q9ULJ7 1429 aa14.65□□□□□ -0.06
COL9A1-202ENST00000357250 FYCO1Q9BQS8 1478 aa14.65□□□□□ -0.06
COL9A1-202ENST00000357250 DNMBPQ6XZF7 1577 aa14.65□□□□□ -0.06
COL9A1-202ENST00000357250 CHMP4CQ96CF2 233 aa14.65□□□□□ -0.06
COL9A1-202ENST00000357250 RTN4Q9NQC3 1192 aaKnown RBP14.64□□□□□ -0.07
COL9A1-202ENST00000357250 GOLGA6L3A6NEY3 463 aa14.63□□□□□ -0.07
COL9A1-202ENST00000357250 KIF3AQ9Y496 699 aa14.63□□□□□ -0.07
COL9A1-202ENST00000357250 TPM4P67936 248 aa14.63□□□□□ -0.07
COL9A1-202ENST00000357250 SUGP2Q8IX01 1082 aaKnown RBP eCLIP14.63□□□□□ -0.07
COL9A1-202ENST00000357250 ST18O60284 1047 aa14.63□□□□□ -0.07
COL9A1-202ENST00000357250 PAK3O75914 559 aaPredicted RBP14.63□□□□□ -0.07
COL9A1-202ENST00000357250 SPRYD3Q8NCJ5 442 aa14.63□□□□□ -0.07
COL9A1-202ENST00000357250 SLKQ9H2G2 1235 aaPredicted RBP14.63□□□□□ -0.07
COL9A1-202ENST00000357250 CDK13Q14004 1512 aaKnown RBP14.62□□□□□ -0.07
COL9A1-202ENST00000357250 EVC2Q86UK5 1308 aa14.62□□□□□ -0.07
COL9A1-202ENST00000357250 APBB1O00213 710 aa14.62□□□□□ -0.07
COL9A1-202ENST00000357250 MFAP1P55081 439 aaKnown RBP14.62□□□□□ -0.07
COL9A1-202ENST00000357250 RRP7AQ9Y3A4 280 aaKnown RBP14.62□□□□□ -0.07
COL9A1-202ENST00000357250 CSB-PGBD3P0DP91 1061 aa14.62□□□□□ -0.07
COL9A1-202ENST00000357250 FAM69CQ0P6D2 419 aa14.62□□□□□ -0.07
COL9A1-202ENST00000357250 IFT140Q96RY7 1462 aa14.61□□□□□ -0.07
COL9A1-202ENST00000357250 PHF14O94880 888 aa14.61□□□□□ -0.07
COL9A1-202ENST00000357250 NBPF8Q3BBV2 869 aa14.61□□□□□ -0.07
COL9A1-202ENST00000357250 KIF7Q2M1P5 1343 aa14.61□□□□□ -0.07
COL9A1-202ENST00000357250 AAMPQ13685 434 aa14.6□□□□□ -0.07
COL9A1-202ENST00000357250 FAM161AQ3B820 660 aa14.6□□□□□ -0.07
COL9A1-202ENST00000357250 ABCA10Q8WWZ4 1543 aa14.6□□□□□ -0.07
COL9A1-202ENST00000357250 WASHC2AQ641Q2 1341 aa14.6□□□□□ -0.07
COL9A1-202ENST00000357250 DDX11L8A8MPP1 907 aa14.6□□□□□ -0.07
COL9A1-202ENST00000357250 NGDNQ8NEJ9 315 aaKnown RBP14.6□□□□□ -0.07
COL9A1-202ENST00000357250 TIAM1Q13009 1591 aa14.6□□□□□ -0.07
COL9A1-202ENST00000357250 ZKSCAN2Q63HK3 967 aa14.59□□□□□ -0.07
COL9A1-202ENST00000357250 RRP1P56182 461 aaKnown RBP14.59□□□□□ -0.07
COL9A1-202ENST00000357250 AMPHP49418 695 aa14.59□□□□□ -0.07
COL9A1-202ENST00000357250 NBPF1Q3BBV0 1214 aa14.59□□□□□ -0.07
COL9A1-202ENST00000357250 TMEM132EQ6IEE7 984 aa14.58□□□□□ -0.07
COL9A1-202ENST00000357250 MINK1Q8N4C8 1332 aaPredicted RBP14.58□□□□□ -0.07
COL9A1-202ENST00000357250 URB2Q14146 1524 aaKnown RBP14.58□□□□□ -0.08
COL9A1-202ENST00000357250 GORABQ5T7V8 394 aa14.58□□□□□ -0.08
COL9A1-202ENST00000357250 TRIM6-TRIM34B2RNG4 842 aa14.58□□□□□ -0.08
COL9A1-202ENST00000357250 CLUAP1Q96AJ1 413 aa14.58□□□□□ -0.08
COL9A1-202ENST00000357250 ZNF608Q9ULD9 1512 aaPredicted RBP14.58□□□□□ -0.08
COL9A1-202ENST00000357250 MIA2Q96PC5 1412 aa14.57□□□□□ -0.08
COL9A1-202ENST00000357250 PEG3Q9GZU2 1588 aa14.57□□□□□ -0.08
COL9A1-202ENST00000357250 TAOK2Q9UL54 1235 aa14.57□□□□□ -0.08
COL9A1-202ENST00000357250 SKOR2Q2VWA4 1001 aaPredicted RBP14.56□□□□□ -0.08
COL9A1-202ENST00000357250 PLIN1O60240 522 aa14.56□□□□□ -0.08
COL9A1-202ENST00000357250 ATP6V1DQ9Y5K8 247 aa14.55□□□□□ -0.08
COL9A1-202ENST00000357250 PDE4AP27815 886 aa14.54□□□□□ -0.08
COL9A1-202ENST00000357250 COG3Q96JB2 828 aa14.54□□□□□ -0.08
COL9A1-202ENST00000357250 EFCAB5A4FU69 1503 aa14.54□□□□□ -0.08
COL9A1-202ENST00000357250 PLB1Q6P1J6 1458 aa14.54□□□□□ -0.08
COL9A1-202ENST00000357250 KIF16BQ96L93 1317 aa14.54□□□□□ -0.08
COL9A1-202ENST00000357250 ARHGAP5Q13017 1502 aa14.54□□□□□ -0.08
COL9A1-202ENST00000357250 SYNJ2O15056 1496 aa14.54□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms