RNA–Protein interactions for RNA: ENST00000353479.9

COL17A1-201, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene COL17A1, Length 5,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-201ENST00000353479 APBB1O00213 710 aa19.01■□□□□ 0.63
COL17A1-201ENST00000353479 MYBBP1AQ9BQG0 1328 aaKnown RBP19■□□□□ 0.63
COL17A1-201ENST00000353479 ITPRIPQ8IWB1 547 aa19■□□□□ 0.63
COL17A1-201ENST00000353479 COG3Q96JB2 828 aa19■□□□□ 0.63
COL17A1-201ENST00000353479 CGNL1Q0VF96 1302 aa19■□□□□ 0.63
COL17A1-201ENST00000353479 KCNJ4P48050 445 aa19■□□□□ 0.63
COL17A1-201ENST00000353479 ABCF1Q8NE71 845 aaKnown RBP eCLIP18.99■□□□□ 0.63
COL17A1-201ENST00000353479 ABCA10Q8WWZ4 1543 aa18.99■□□□□ 0.63
COL17A1-201ENST00000353479 GOLGA6L22H0YM25 854 aa18.98■□□□□ 0.63
COL17A1-201ENST00000353479 STK31Q9BXU1 1019 aa18.98■□□□□ 0.63
COL17A1-201ENST00000353479 TAOK2Q9UL54 1235 aa18.97■□□□□ 0.63
COL17A1-201ENST00000353479 RRP7AQ9Y3A4 280 aaKnown RBP18.97■□□□□ 0.63
COL17A1-201ENST00000353479 TPRNQ4KMQ1 711 aa18.97■□□□□ 0.63
COL17A1-201ENST00000353479 SMC4Q9NTJ3 1288 aa18.97■□□□□ 0.63
COL17A1-201ENST00000353479 EHBP1L1Q8N3D4 1523 aa18.97■□□□□ 0.63
COL17A1-201ENST00000353479 TROQ12816 1431 aaPredicted RBP18.96■□□□□ 0.63
COL17A1-201ENST00000353479 FGD1P98174 961 aa18.95■□□□□ 0.62
COL17A1-201ENST00000353479 HECW1Q76N89 1606 aa18.95■□□□□ 0.62
COL17A1-201ENST00000353479 KIAA0586Q9BVV6 1533 aa18.95■□□□□ 0.62
COL17A1-201ENST00000353479 LMOD3Q0VAK6 560 aa18.95■□□□□ 0.62
COL17A1-201ENST00000353479 CENPJQ9HC77 1338 aaPredicted RBP18.93■□□□□ 0.62
COL17A1-201ENST00000353479 PRKRIP1Q9H875 184 aaPredicted RBP18.93■□□□□ 0.62
COL17A1-201ENST00000353479 SCAPERQ9BY12 1400 aa18.92■□□□□ 0.62
COL17A1-201ENST00000353479 TMEM132EQ6IEE7 984 aa18.92■□□□□ 0.62
COL17A1-201ENST00000353479 C9orf84Q5VXU9 1444 aa18.92■□□□□ 0.62
COL17A1-201ENST00000353479 CLUAP1Q96AJ1 413 aa18.91■□□□□ 0.62
COL17A1-201ENST00000353479 CHMP4AQ9BY43 222 aa18.91■□□□□ 0.62
COL17A1-201ENST00000353479 NAP1L2Q9ULW6 460 aaPredicted RBP18.91■□□□□ 0.62
COL17A1-201ENST00000353479 RRBP1Q9P2E9 1410 aaKnown RBP18.91■□□□□ 0.62
COL17A1-201ENST00000353479 STAC3Q96MF2 364 aa18.89■□□□□ 0.62
COL17A1-201ENST00000353479 HSP90AB1P08238 724 aaKnown RBP18.89■□□□□ 0.61
COL17A1-201ENST00000353479 SLC4A10Q6U841 1118 aa18.89■□□□□ 0.61
COL17A1-201ENST00000353479 UNC13AQ9UPW8 1703 aa18.89■□□□□ 0.61
COL17A1-201ENST00000353479 RAPGEF3O95398 923 aa18.89■□□□□ 0.61
COL17A1-201ENST00000353479 PSME1Q06323 249 aa18.89■□□□□ 0.61
COL17A1-201ENST00000353479 RWDD1Q9H446 243 aaPredicted RBP18.89■□□□□ 0.61
COL17A1-201ENST00000353479 IQGAP2Q13576 1575 aa18.88■□□□□ 0.61
COL17A1-201ENST00000353479 CDK13Q14004 1512 aaKnown RBP18.88■□□□□ 0.61
COL17A1-201ENST00000353479 PLEKHH2Q8IVE3 1493 aa18.88■□□□□ 0.61
COL17A1-201ENST00000353479 MIA2Q96PC5 1412 aa18.88■□□□□ 0.61
COL17A1-201ENST00000353479 PDE3BQ13370 1112 aa18.88■□□□□ 0.61
COL17A1-201ENST00000353479 TIAM1Q13009 1591 aa18.88■□□□□ 0.61
COL17A1-201ENST00000353479 EVA1CP58658 441 aa18.86■□□□□ 0.61
COL17A1-201ENST00000353479 CHMP3Q9Y3E7 222 aa18.85■□□□□ 0.61
COL17A1-201ENST00000353479 CFAP70Q5T0N1 1121 aa18.85■□□□□ 0.61
COL17A1-201ENST00000353479 URB2Q14146 1524 aaKnown RBP18.85■□□□□ 0.61
COL17A1-201ENST00000353479 ELL2O00472 640 aaPredicted RBP18.84■□□□□ 0.61
COL17A1-201ENST00000353479 CABP2Q9NPB3 220 aa18.84■□□□□ 0.61
COL17A1-201ENST00000353479 EPRSP07814 1512 aaKnown RBP18.84■□□□□ 0.61
COL17A1-201ENST00000353479 ZRSR1Q15695 479 aaKnown RBP18.84■□□□□ 0.61
COL17A1-201ENST00000353479 KIF7Q2M1P5 1343 aa18.83■□□□□ 0.6
COL17A1-201ENST00000353479 C1orf141Q5JVX7 400 aa18.83■□□□□ 0.6
COL17A1-201ENST00000353479 PEG3Q9GZU2 1588 aa18.83■□□□□ 0.6
COL17A1-201ENST00000353479 MCCP23508 829 aa18.83■□□□□ 0.6
COL17A1-201ENST00000353479 CUL7Q14999 1698 aa18.82■□□□□ 0.6
COL17A1-201ENST00000353479 ANP32EQ9BTT0 268 aa18.82■□□□□ 0.6
COL17A1-201ENST00000353479 DIAPH1O60610 1272 aaKnown RBP18.82■□□□□ 0.6
COL17A1-201ENST00000353479 GRIN2AQ12879 1464 aa18.81■□□□□ 0.6
COL17A1-201ENST00000353479 TXNDC2Q86VQ3 553 aa18.81■□□□□ 0.6
COL17A1-201ENST00000353479 SUPT6HQ7KZ85 1726 aaKnown RBP18.81■□□□□ 0.6
COL17A1-201ENST00000353479 CCDC7Q96M83 1385 aa18.8■□□□□ 0.6
COL17A1-201ENST00000353479 ATF3P18847 181 aa18.8■□□□□ 0.6
COL17A1-201ENST00000353479 HSCBQ8IWL3 235 aa18.8■□□□□ 0.6
COL17A1-201ENST00000353479 PMFBP1Q8TBY8 1022 aa18.8■□□□□ 0.6
COL17A1-201ENST00000353479 DAPK1P53355 1430 aa18.8■□□□□ 0.6
COL17A1-201ENST00000353479 ERICH6BQ5W0A0 696 aa18.8■□□□□ 0.6
COL17A1-201ENST00000353479 MAGI1Q96QZ7 1491 aaPredicted RBP18.79■□□□□ 0.6
COL17A1-201ENST00000353479 APAF1O14727 1248 aa18.79■□□□□ 0.6
COL17A1-201ENST00000353479 BCL2L13Q9BXK5 485 aa18.79■□□□□ 0.6
COL17A1-201ENST00000353479 TAF7LQ5H9L4 462 aa18.78■□□□□ 0.6
COL17A1-201ENST00000353479 AEBP2Q6ZN18 517 aaPredicted RBP18.78■□□□□ 0.6
COL17A1-201ENST00000353479 PLB1Q6P1J6 1458 aa18.78■□□□□ 0.6
COL17A1-201ENST00000353479 ZNF608Q9ULD9 1512 aaPredicted RBP18.78■□□□□ 0.6
COL17A1-201ENST00000353479 GGNBP2Q9H3C7 697 aa18.78■□□□□ 0.6
COL17A1-201ENST00000353479 HMMRO75330 724 aa18.77■□□□□ 0.6
COL17A1-201ENST00000353479 TEFQ10587 303 aa18.77■□□□□ 0.6
COL17A1-201ENST00000353479 CFAP44Q96MT7 982 aa18.77■□□□□ 0.6
COL17A1-201ENST00000353479 KIAA1211Q6ZU35 1233 aa18.77■□□□□ 0.6
COL17A1-201ENST00000353479 ARHGEF11O15085 1522 aa18.77■□□□□ 0.6
COL17A1-201ENST00000353479 HDAC5Q9UQL6 1122 aa18.76■□□□□ 0.59
COL17A1-201ENST00000353479 KIAA1107Q9UPP5 1409 aa18.76■□□□□ 0.59
COL17A1-201ENST00000353479 GORABQ5T7V8 394 aa18.76■□□□□ 0.59
COL17A1-201ENST00000353479 NUTM2GQ5VZR2 741 aa18.76■□□□□ 0.59
COL17A1-201ENST00000353479 SPRYD3Q8NCJ5 442 aa18.76■□□□□ 0.59
COL17A1-201ENST00000353479 HFM1A2PYH4 1435 aa18.76■□□□□ 0.59
COL17A1-201ENST00000353479 CDK11BP21127 795 aaKnown RBP18.76■□□□□ 0.59
COL17A1-201ENST00000353479 NOP58Q9Y2X3 529 aaKnown RBP18.75■□□□□ 0.59
COL17A1-201ENST00000353479 PCF11O94913 1555 aaKnown RBP18.75■□□□□ 0.59
COL17A1-201ENST00000353479 NBPF1Q3BBV0 1214 aa18.75■□□□□ 0.59
COL17A1-201ENST00000353479 E9PSI1 815 aa18.75■□□□□ 0.59
COL17A1-201ENST00000353479 TULP1O00294 542 aaPredicted RBP18.73■□□□□ 0.59
COL17A1-201ENST00000353479 RIPK4P57078 832 aa18.72■□□□□ 0.59
COL17A1-201ENST00000353479 PRAM1Q96QH2 718 aa18.72■□□□□ 0.59
COL17A1-201ENST00000353479 TMX4Q9H1E5 349 aaPredicted RBP18.72■□□□□ 0.59
COL17A1-201ENST00000353479 TRIM44Q96DX7 344 aaPredicted RBP18.71■□□□□ 0.59
COL17A1-201ENST00000353479 PLIN1O60240 522 aa18.71■□□□□ 0.59
COL17A1-201ENST00000353479 ISY1Q9ULR0 285 aaKnown RBP18.71■□□□□ 0.59
COL17A1-201ENST00000353479 GTF2E1P29083 439 aaPredicted RBP18.71■□□□□ 0.59
COL17A1-201ENST00000353479 TRIM6-TRIM34B2RNG4 842 aa18.71■□□□□ 0.58
COL17A1-201ENST00000353479 THEMISQ8N1K5 641 aaPredicted RBP18.71■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 56.2 ms