RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 TDRD9Q8NDG6 1382 aaKnown RBP8.94□□□□□ -0.98
VPS39-202ENST00000348544 UHRF1BP1Q6BDS2 1440 aa8.94□□□□□ -0.98
VPS39-202ENST00000348544 C8orf34Q49A92 452 aa8.94□□□□□ -0.98
VPS39-202ENST00000348544 FAM43AQ8N2R8 423 aa8.94□□□□□ -0.98
VPS39-202ENST00000348544 WDR62O43379 1518 aa8.93□□□□□ -0.98
VPS39-202ENST00000348544 PARD3Q8TEW0 1356 aa8.93□□□□□ -0.98
VPS39-202ENST00000348544 ST20-MTHFSA0A0A6YYL1 179 aa8.92□□□□□ -0.98
VPS39-202ENST00000348544 NLRP13Q86W25 1043 aa8.92□□□□□ -0.98
VPS39-202ENST00000348544 RSPH6AQ9H0K4 717 aa8.92□□□□□ -0.98
VPS39-202ENST00000348544 CARD11Q9BXL7 1154 aa8.92□□□□□ -0.98
VPS39-202ENST00000348544 GAPVD1Q14C86 1478 aa8.91□□□□□ -0.98
VPS39-202ENST00000348544 BLMP54132 1417 aaPredicted RBP8.91□□□□□ -0.98
VPS39-202ENST00000348544 PKD2Q13563 968 aa8.91□□□□□ -0.98
VPS39-202ENST00000348544 FAM161AQ3B820 660 aa8.9□□□□□ -0.98
VPS39-202ENST00000348544 DAXXQ9UER7 740 aaPredicted RBP8.9□□□□□ -0.98
VPS39-202ENST00000348544 CNKSR2Q8WXI2 1034 aa8.9□□□□□ -0.98
VPS39-202ENST00000348544 URB2Q14146 1524 aaKnown RBP8.9□□□□□ -0.98
VPS39-202ENST00000348544 NPM3O75607 178 aaKnown RBP8.89□□□□□ -0.99
VPS39-202ENST00000348544 CENPQQ7L2Z9 268 aaPredicted RBP8.89□□□□□ -0.99
VPS39-202ENST00000348544 KIAA0586Q9BVV6 1533 aa8.89□□□□□ -0.99
VPS39-202ENST00000348544 ZNF608Q9ULD9 1512 aaPredicted RBP8.89□□□□□ -0.99
VPS39-202ENST00000348544 ARHGEF12Q9NZN5 1544 aa8.88□□□□□ -0.99
VPS39-202ENST00000348544 PER1O15534 1290 aaPredicted RBP8.88□□□□□ -0.99
VPS39-202ENST00000348544 RRAGDQ9NQL2 400 aaPredicted RBP8.88□□□□□ -0.99
VPS39-202ENST00000348544 POGKQ9P215 609 aa8.88□□□□□ -0.99
VPS39-202ENST00000348544 ZMYM4Q5VZL5 1548 aa8.88□□□□□ -0.99
VPS39-202ENST00000348544 ADGBQ8N7X0 1667 aa8.87□□□□□ -0.99
VPS39-202ENST00000348544 IQGAP2Q13576 1575 aa8.87□□□□□ -0.99
VPS39-202ENST00000348544 INSRP06213 1382 aa8.87□□□□□ -0.99
VPS39-202ENST00000348544 CAMSAP2Q08AD1 1489 aa8.86□□□□□ -0.99
VPS39-202ENST00000348544 KDM2AQ9Y2K7 1162 aa8.86□□□□□ -0.99
VPS39-202ENST00000348544 ADGRL2O95490 1459 aa8.86□□□□□ -0.99
VPS39-202ENST00000348544 USP19O94966 1318 aa8.86□□□□□ -0.99
VPS39-202ENST00000348544 RGS3P49796 1198 aa8.85□□□□□ -0.99
VPS39-202ENST00000348544 PLEKHH2Q8IVE3 1493 aa8.85□□□□□ -0.99
VPS39-202ENST00000348544 CROCC2H7BZ55 1655 aa8.84□□□□□ -0.99
VPS39-202ENST00000348544 CC2D1BQ5T0F9 858 aaKnown RBP8.84□□□□□ -0.99
VPS39-202ENST00000348544 PLEKHH1Q9ULM0 1364 aa8.84□□□□□ -0.99
VPS39-202ENST00000348544 NUP153P49790 1475 aaKnown RBP8.84□□□□□ -0.99
VPS39-202ENST00000348544 CEP170Q5SW79 1584 aa8.83□□□□□ -1
VPS39-202ENST00000348544 DUSP27Q5VZP5 1158 aa8.83□□□□□ -1
VPS39-202ENST00000348544 VIRMAQ69YN4 1812 aaKnown RBP8.83□□□□□ -1
VPS39-202ENST00000348544 ANKRD50Q9ULJ7 1429 aa8.82□□□□□ -1
VPS39-202ENST00000348544 PKNOX2Q96KN3 472 aa8.82□□□□□ -1
VPS39-202ENST00000348544 KDM5DQ9BY66 1539 aa8.82□□□□□ -1
VPS39-202ENST00000348544 TRPM1Q7Z4N2 1603 aa8.82□□□□□ -1
VPS39-202ENST00000348544 ADAMTS8Q9UP79 889 aa8.82□□□□□ -1
VPS39-202ENST00000348544 COL17A1Q9UMD9 1497 aaPredicted RBP8.82□□□□□ -1
VPS39-202ENST00000348544 SEC24BO95487 1268 aa8.81□□□□□ -1
VPS39-202ENST00000348544 NUP155O75694 1391 aa8.81□□□□□ -1
VPS39-202ENST00000348544 DISP3Q9P2K9 1392 aa8.81□□□□□ -1
VPS39-202ENST00000348544 PRG4Q92954 1404 aaPredicted RBP8.81□□□□□ -1
VPS39-202ENST00000348544 NLRP1Q9C000 1473 aa8.81□□□□□ -1
VPS39-202ENST00000348544 ZNF521Q96K83 1311 aa8.81□□□□□ -1
VPS39-202ENST00000348544 CFDP1Q9UEE9 299 aaPredicted RBP8.8□□□□□ -1
VPS39-202ENST00000348544 GPATCH8Q9UKJ3 1502 aaKnown RBP8.8□□□□□ -1
VPS39-202ENST00000348544 ANKRD30AQ9BXX3 1397 aa8.8□□□□□ -1
VPS39-202ENST00000348544 NBPF1Q3BBV0 1214 aa8.8□□□□□ -1
VPS39-202ENST00000348544 PRAG1Q86YV5 1406 aa8.8□□□□□ -1
VPS39-202ENST00000348544 TARBP1Q13395 1621 aaKnown RBP8.8□□□□□ -1
VPS39-202ENST00000348544 SLKQ9H2G2 1235 aaPredicted RBP8.79□□□□□ -1
VPS39-202ENST00000348544 ANTXR1Q9H6X2 564 aa8.79□□□□□ -1
VPS39-202ENST00000348544 PANK3Q9H999 370 aa8.79□□□□□ -1
VPS39-202ENST00000348544 ITSN2Q9NZM3 1697 aa8.79□□□□□ -1
VPS39-202ENST00000348544 TESK2Q96S53 571 aa8.79□□□□□ -1
VPS39-202ENST00000348544 ZNF777Q9ULD5 760 aaPredicted RBP8.79□□□□□ -1
VPS39-202ENST00000348544 PBRM1Q86U86 1689 aa8.79□□□□□ -1
VPS39-202ENST00000348544 RAPGEF6Q8TEU7 1601 aa8.78□□□□□ -1
VPS39-202ENST00000348544 IGHDP01880 384 aa8.78□□□□□ -1
VPS39-202ENST00000348544 EIF3AQ14152 1382 aaKnown RBP8.78□□□□□ -1
VPS39-202ENST00000348544 ADAMTS12P58397 1594 aa8.78□□□□□ -1
VPS39-202ENST00000348544 TROQ12816 1431 aaPredicted RBP8.78□□□□□ -1
VPS39-202ENST00000348544 L1TD1Q5T7N2 865 aaKnown RBP8.78□□□□□ -1
VPS39-202ENST00000348544 DMRT2Q9Y5R5 561 aa8.78□□□□□ -1
VPS39-202ENST00000348544 DISP1Q96F81 1524 aa8.78□□□□□ -1
VPS39-202ENST00000348544 KIAA0556O60303 1618 aa8.78□□□□□ -1
VPS39-202ENST00000348544 XRCC6P12956 609 aaKnown RBP eCLIP8.77□□□□□ -1
VPS39-202ENST00000348544 GPRASP1Q5JY77 1395 aa8.77□□□□□ -1.01
VPS39-202ENST00000348544 PTPRGP23470 1445 aa8.77□□□□□ -1.01
VPS39-202ENST00000348544 PRDM15P57071 1507 aaPredicted RBP8.77□□□□□ -1.01
VPS39-202ENST00000348544 EIF4G3O43432 1585 aaKnown RBP8.77□□□□□ -1.01
VPS39-202ENST00000348544 GOLGA2Q08379 1002 aa8.77□□□□□ -1.01
VPS39-202ENST00000348544 SLFN5Q08AF3 891 aa8.77□□□□□ -1.01
VPS39-202ENST00000348544 GOLGA6L2Q8N9W4 650 aaPredicted RBP8.77□□□□□ -1.01
VPS39-202ENST00000348544 PANK2Q9BZ23 570 aa8.77□□□□□ -1.01
VPS39-202ENST00000348544 SPINK5Q9NQ38 1064 aaPredicted RBP8.77□□□□□ -1.01
VPS39-202ENST00000348544 CDC42BPAQ5VT25 1732 aa8.76□□□□□ -1.01
VPS39-202ENST00000348544 FSD2A1L4K1 749 aa8.76□□□□□ -1.01
VPS39-202ENST00000348544 ARXQ96QS3 562 aa8.76□□□□□ -1.01
VPS39-202ENST00000348544 CLASP1Q7Z460 1538 aa8.76□□□□□ -1.01
VPS39-202ENST00000348544 BCAR3O75815 825 aa8.76□□□□□ -1.01
VPS39-202ENST00000348544 TRMT2AQ8IZ69 625 aaKnown RBP8.76□□□□□ -1.01
VPS39-202ENST00000348544 ERBINQ96RT1 1412 aa8.76□□□□□ -1.01
VPS39-202ENST00000348544 NAP1L5Q96NT1 182 aaPredicted RBP8.75□□□□□ -1.01
VPS39-202ENST00000348544 ADCY10Q96PN6 1610 aa8.75□□□□□ -1.01
VPS39-202ENST00000348544 LAMC1P11047 1609 aa8.75□□□□□ -1.01
VPS39-202ENST00000348544 C9orf84Q5VXU9 1444 aa8.75□□□□□ -1.01
VPS39-202ENST00000348544 SLC24A1O60721 1099 aa8.75□□□□□ -1.01
VPS39-202ENST00000348544 PPP2R1AP30153 589 aa8.75□□□□□ -1.01
VPS39-202ENST00000348544 CLCN1P35523 988 aa8.75□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms