RNA–Protein interactions for RNA: ENST00000345865.6

UPF3B-202, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3B, Length 2,335 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-202ENST00000345865 GRWD1Q9BQ67 446 aaKnown RBP eCLIP21.29■■□□□ 12e-7■■■□□ 16.4
UPF3B-202ENST00000345865 POLR3GLQ9BT43 218 aa21.29■■□□□ 1
UPF3B-202ENST00000345865 UHRF1BP1LA0JNW5 1464 aa21.29■■□□□ 1
UPF3B-202ENST00000345865 TSHZ2Q9NRE2 1034 aa21.27■■□□□ 1
UPF3B-202ENST00000345865 CCDC144AA2RUR9 1427 aa21.26■□□□□ 0.99
UPF3B-202ENST00000345865 ARID4BQ4LE39 1312 aaPredicted RBP21.26■□□□□ 0.99
UPF3B-202ENST00000345865 IQGAP3Q86VI3 1631 aa21.25■□□□□ 0.99
UPF3B-202ENST00000345865 ST20-MTHFSA0A0A6YYL1 179 aa21.25■□□□□ 0.99
UPF3B-202ENST00000345865 DUOX2Q9NRD8 1548 aa21.24■□□□□ 0.99
UPF3B-202ENST00000345865 TRAPPC8Q9Y2L5 1435 aa21.23■□□□□ 0.99
UPF3B-202ENST00000345865 CNGB1Q14028 1251 aaPredicted RBP21.23■□□□□ 0.99
UPF3B-202ENST00000345865 EFCAB2Q5VUJ9 269 aa21.23■□□□□ 0.99
UPF3B-202ENST00000345865 ABCC1P33527 1531 aa21.23■□□□□ 0.99
UPF3B-202ENST00000345865 RGL3Q3MIN7 710 aa21.22■□□□□ 0.99
UPF3B-202ENST00000345865 PRAG1Q86YV5 1406 aa21.22■□□□□ 0.99
UPF3B-202ENST00000345865 MAGI2Q86UL8 1455 aa21.21■□□□□ 0.99
UPF3B-202ENST00000345865 ROCK2O75116 1388 aaKnown RBP21.2■□□□□ 0.99
UPF3B-202ENST00000345865 TRPM1Q7Z4N2 1603 aa21.2■□□□□ 0.98
UPF3B-202ENST00000345865 A2MP01023 1474 aa21.19■□□□□ 0.98
UPF3B-202ENST00000345865 ERBINQ96RT1 1412 aa21.19■□□□□ 0.98
UPF3B-202ENST00000345865 NBPF1Q3BBV0 1214 aa21.17■□□□□ 0.98
UPF3B-202ENST00000345865 ZBED9Q6R2W3 1325 aa21.17■□□□□ 0.98
UPF3B-202ENST00000345865 IRX6P78412 446 aaPredicted RBP21.15■□□□□ 0.98
UPF3B-202ENST00000345865 ATP10AO60312 1499 aa21.14■□□□□ 0.97
UPF3B-202ENST00000345865 AFAP1Q8N556 730 aa21.14■□□□□ 0.97
UPF3B-202ENST00000345865 E9PCH4 1651 aa21.11■□□□□ 0.97
UPF3B-202ENST00000345865 GPRASP1Q5JY77 1395 aa21.11■□□□□ 0.97
UPF3B-202ENST00000345865 SPAG9O60271 1321 aaKnown RBP21.1■□□□□ 0.97
UPF3B-202ENST00000345865 ARAP3Q8WWN8 1544 aa21.1■□□□□ 0.97
UPF3B-202ENST00000345865 ZFYVE16Q7Z3T8 1539 aa21.09■□□□□ 0.97
UPF3B-202ENST00000345865 WDR7Q9Y4E6 1490 aa21.08■□□□□ 0.97
UPF3B-202ENST00000345865 RTEL1-TNFRSF6BF6WH68 1400 aa21.07■□□□□ 0.96
UPF3B-202ENST00000345865 PRDM15P57071 1507 aaPredicted RBP21.06■□□□□ 0.96
UPF3B-202ENST00000345865 PNISRQ8TF01 805 aaKnown RBP21.05■□□□□ 0.96
UPF3B-202ENST00000345865 LAMC1P11047 1609 aa21.05■□□□□ 0.96
UPF3B-202ENST00000345865 ABCA9Q8IUA7 1624 aa21.04■□□□□ 0.96
UPF3B-202ENST00000345865 TESK2Q96S53 571 aa21.04■□□□□ 0.96
UPF3B-202ENST00000345865 FANCAO15360 1455 aa21.03■□□□□ 0.96
UPF3B-202ENST00000345865 EIF2AK4Q9P2K8 1649 aaKnown RBP21.01■□□□□ 0.95
UPF3B-202ENST00000345865 TMC1Q8TDI8 760 aa21.01■□□□□ 0.95
UPF3B-202ENST00000345865 DISP3Q9P2K9 1392 aa21.01■□□□□ 0.95
UPF3B-202ENST00000345865 DEPDC5O75140 1603 aa21.01■□□□□ 0.95
UPF3B-202ENST00000345865 SENP3-EIF4A1A0A087X0R7 540 aa21■□□□□ 0.95
UPF3B-202ENST00000345865 COL17A1Q9UMD9 1497 aaPredicted RBP21■□□□□ 0.95
UPF3B-202ENST00000345865 INO80Q9ULG1 1556 aaPredicted RBP20.99■□□□□ 0.95
UPF3B-202ENST00000345865 PER1O15534 1290 aaPredicted RBP20.99■□□□□ 0.95
UPF3B-202ENST00000345865 ATP7AQ04656 1500 aa20.99■□□□□ 0.95
UPF3B-202ENST00000345865 MYBBP1AQ9BQG0 1328 aaKnown RBP20.99■□□□□ 0.95
UPF3B-202ENST00000345865 RALBP1Q15311 655 aa20.98■□□□□ 0.95
UPF3B-202ENST00000345865 RNF17Q9BXT8 1623 aaKnown RBP20.98■□□□□ 0.95
UPF3B-202ENST00000345865 TRPM2O94759 1503 aa20.97■□□□□ 0.95
UPF3B-202ENST00000345865 PTPRTO14522 1441 aa20.97■□□□□ 0.95
UPF3B-202ENST00000345865 KTN1Q86UP2 1357 aaKnown RBP20.97■□□□□ 0.95
UPF3B-202ENST00000345865 SPHKAPQ2M3C7 1700 aa20.96■□□□□ 0.95
UPF3B-202ENST00000345865 ASXL2Q76L83 1435 aa20.96■□□□□ 0.95
UPF3B-202ENST00000345865 BRD4O60885 1362 aaPredicted RBP20.96■□□□□ 0.95
UPF3B-202ENST00000345865 LRPPRCP42704 1394 aaKnown RBP20.96■□□□□ 0.95
UPF3B-202ENST00000345865 SMG6Q86US8 1419 aaKnown RBP20.96■□□□□ 0.95
UPF3B-202ENST00000345865 SCAPERQ9BY12 1400 aa20.96■□□□□ 0.95
UPF3B-202ENST00000345865 ADGRL1O94910 1474 aa20.95■□□□□ 0.94
UPF3B-202ENST00000345865 CLTCL1P53675 1640 aa20.95■□□□□ 0.94
UPF3B-202ENST00000345865 ERICH6BQ5W0A0 696 aa20.95■□□□□ 0.94
UPF3B-202ENST00000345865 MADDQ8WXG6 1647 aa20.95■□□□□ 0.94
UPF3B-202ENST00000345865 PARD3Q8TEW0 1356 aa20.94■□□□□ 0.94
UPF3B-202ENST00000345865 CEP152O94986 1710 aa20.94■□□□□ 0.94
UPF3B-202ENST00000345865 VWDEQ8N2E2 1590 aa20.94■□□□□ 0.94
UPF3B-202ENST00000345865 TET3O43151 1660 aa20.93■□□□□ 0.94
UPF3B-202ENST00000345865 KIF3BO15066 747 aa20.92■□□□□ 0.94
UPF3B-202ENST00000345865 PPP4R2Q9NY27 417 aa20.91■□□□□ 0.94
UPF3B-202ENST00000345865 NUDCQ9Y266 331 aa20.91■□□□□ 0.94
UPF3B-202ENST00000345865 RBM19Q9Y4C8 960 aaKnown RBP20.9■□□□□ 0.94
UPF3B-202ENST00000345865 MROH1Q8NDA8 1641 aa20.9■□□□□ 0.94
UPF3B-202ENST00000345865 PANK3Q9H999 370 aa20.89■□□□□ 0.93
UPF3B-202ENST00000345865 MYT1LQ9UL68 1186 aa20.89■□□□□ 0.93
UPF3B-202ENST00000345865 TMF1P82094 1093 aa20.88■□□□□ 0.93
UPF3B-202ENST00000345865 IQGAP1P46940 1657 aa20.88■□□□□ 0.93
UPF3B-202ENST00000345865 NLRP13Q86W25 1043 aa20.88■□□□□ 0.93
UPF3B-202ENST00000345865 KIDINS220Q9ULH0 1771 aa20.87■□□□□ 0.93
UPF3B-202ENST00000345865 KANK1Q14678 1352 aa20.86■□□□□ 0.93
UPF3B-202ENST00000345865 CC2D1BQ5T0F9 858 aaKnown RBP20.86■□□□□ 0.93
UPF3B-202ENST00000345865 B4GALNT3Q6L9W6 998 aa20.84■□□□□ 0.93
UPF3B-202ENST00000345865 UGGT1Q9NYU2 1555 aa20.84■□□□□ 0.93
UPF3B-202ENST00000345865 RNF123Q5XPI4 1314 aa20.84■□□□□ 0.93
UPF3B-202ENST00000345865 WASHC2CQ9Y4E1 1318 aa20.83■□□□□ 0.93
UPF3B-202ENST00000345865 OSCARQ8IYS5 282 aa20.81■□□□□ 0.92
UPF3B-202ENST00000345865 SCAF11Q99590 1463 aaKnown RBP20.8■□□□□ 0.92
UPF3B-202ENST00000345865 STAC3Q96MF2 364 aa20.8■□□□□ 0.92
UPF3B-202ENST00000345865 ZNF518AQ6AHZ1 1483 aa20.79■□□□□ 0.92
UPF3B-202ENST00000345865 PPRC1Q5VV67 1664 aaKnown RBP20.78■□□□□ 0.92
UPF3B-202ENST00000345865 EFCAB6Q5THR3 1501 aa20.78■□□□□ 0.92
UPF3B-202ENST00000345865 NEURL4Q96JN8 1562 aa20.77■□□□□ 0.92
UPF3B-202ENST00000345865 SALL2Q9Y467 1007 aaPredicted RBP20.76■□□□□ 0.91
UPF3B-202ENST00000345865 NPM1P06748 294 aaKnown RBP eCLIP20.76■□□□□ 0.91
UPF3B-202ENST00000345865 CD109Q6YHK3 1445 aa20.75■□□□□ 0.91
UPF3B-202ENST00000345865 KIAA1210Q9ULL0 1709 aa20.75■□□□□ 0.91
UPF3B-202ENST00000345865 ADGRF5Q8IZF2 1346 aa20.74■□□□□ 0.91
UPF3B-202ENST00000345865 MAP3K4Q9Y6R4 1608 aa20.74■□□□□ 0.91
UPF3B-202ENST00000345865 CFAP70Q5T0N1 1121 aa20.73■□□□□ 0.91
UPF3B-202ENST00000345865 KIF1BO60333 1816 aa20.73■□□□□ 0.91
UPF3B-202ENST00000345865 MROH2AA6NES4 1674 aa20.73■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 53.9 ms