RNA–Protein interactions for RNA: ENST00000345734.7

ATG4A-202, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 1 (best) BASIC

Gene ATG4A, Length 2,129 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-202ENST00000345734 MNX1P50219 401 aaPredicted RBP13.45□□□□□ -0.26
ATG4A-202ENST00000345734 AKNAQ7Z591 1439 aa13.45□□□□□ -0.26
ATG4A-202ENST00000345734 SIN3AQ96ST3 1273 aa13.45□□□□□ -0.26
ATG4A-202ENST00000345734 ZNF316A6NFI3 1004 aaPredicted RBP13.43□□□□□ -0.26
ATG4A-202ENST00000345734 RASEFQ8IZ41 740 aa13.43□□□□□ -0.26
ATG4A-202ENST00000345734 NKX1-1Q15270 411 aaPredicted RBP13.43□□□□□ -0.26
ATG4A-202ENST00000345734 FAM212AQ96EL1 285 aa13.42□□□□□ -0.26
ATG4A-202ENST00000345734 ZCCHC11Q5TAX3 1644 aaKnown RBP13.42□□□□□ -0.26
ATG4A-202ENST00000345734 RIOK3O14730 519 aaKnown RBP13.42□□□□□ -0.26
ATG4A-202ENST00000345734 ROCK1Q13464 1354 aa13.41□□□□□ -0.26
ATG4A-202ENST00000345734 UHRF1BP1LA0JNW5 1464 aa13.41□□□□□ -0.26
ATG4A-202ENST00000345734 CDC42BPBQ9Y5S2 1711 aa13.41□□□□□ -0.26
ATG4A-202ENST00000345734 NEUROD1Q13562 356 aa13.41□□□□□ -0.26
ATG4A-202ENST00000345734 CROCC2H7BZ55 1655 aa13.41□□□□□ -0.26
ATG4A-202ENST00000345734 TTC37Q6PGP7 1564 aa13.4□□□□□ -0.26
ATG4A-202ENST00000345734 STK25O00506 426 aa13.39□□□□□ -0.27
ATG4A-202ENST00000345734 TPRNQ4KMQ1 711 aa13.39□□□□□ -0.27
ATG4A-202ENST00000345734 ADGBQ8N7X0 1667 aa13.39□□□□□ -0.27
ATG4A-202ENST00000345734 PREX2Q70Z35 1606 aa13.39□□□□□ -0.27
ATG4A-202ENST00000345734 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP13.38□□□□□ -0.27
ATG4A-202ENST00000345734 KDM5BQ9UGL1 1544 aa13.38□□□□□ -0.27
ATG4A-202ENST00000345734 TRIM52Q96A61 297 aa13.38□□□□□ -0.27
ATG4A-202ENST00000345734 KCNH8Q96L42 1107 aa13.37□□□□□ -0.27
ATG4A-202ENST00000345734 DIEXFQ68CQ4 756 aaKnown RBP13.37□□□□□ -0.27
ATG4A-202ENST00000345734 PYGBP11216 843 aa13.36□□□□□ -0.27
ATG4A-202ENST00000345734 SAMD9LQ8IVG5 1584 aa13.36□□□□□ -0.27
ATG4A-202ENST00000345734 NCOA1Q15788 1441 aa13.36□□□□□ -0.27
ATG4A-202ENST00000345734 PITPNM1O00562 1244 aa13.36□□□□□ -0.27
ATG4A-202ENST00000345734 DENND4BO75064 1496 aaPredicted RBP13.36□□□□□ -0.27
ATG4A-202ENST00000345734 HNRNPMP52272 730 aaKnown RBP eCLIP13.35□□□□□ -0.27
ATG4A-202ENST00000345734 ADGRL2O95490 1459 aa13.35□□□□□ -0.27
ATG4A-202ENST00000345734 MYO5CQ9NQX4 1742 aa13.34□□□□□ -0.27
ATG4A-202ENST00000345734 MBD5Q9P267 1494 aa13.33□□□□□ -0.28
ATG4A-202ENST00000345734 ARHGAP5Q13017 1502 aa13.33□□□□□ -0.28
ATG4A-202ENST00000345734 MPHOSPH9Q99550 1183 aa13.33□□□□□ -0.28
ATG4A-202ENST00000345734 C9orf84Q5VXU9 1444 aa13.32□□□□□ -0.28
ATG4A-202ENST00000345734 ARHGEF5Q12774 1597 aa13.32□□□□□ -0.28
ATG4A-202ENST00000345734 SHANK2Q9UPX8 1470 aa13.32□□□□□ -0.28
ATG4A-202ENST00000345734 ANKRD30AQ9BXX3 1397 aa13.31□□□□□ -0.28
ATG4A-202ENST00000345734 SYCP2Q9BX26 1530 aa13.29□□□□□ -0.28
ATG4A-202ENST00000345734 GTPBP6O43824 516 aaPredicted RBP13.29□□□□□ -0.28
ATG4A-202ENST00000345734 TSPY4P0CV99 314 aa13.29□□□□□ -0.28
ATG4A-202ENST00000345734 TSPY10P0CW01 314 aa13.29□□□□□ -0.28
ATG4A-202ENST00000345734 CHADLQ6NUI6 762 aa13.29□□□□□ -0.28
ATG4A-202ENST00000345734 TIMELESSQ9UNS1 1208 aa13.29□□□□□ -0.28
ATG4A-202ENST00000345734 BCL11BQ9C0K0 894 aaPredicted RBP13.28□□□□□ -0.28
ATG4A-202ENST00000345734 STK24Q9Y6E0 443 aa13.28□□□□□ -0.28
ATG4A-202ENST00000345734 CCDC141Q6ZP82 1450 aa13.28□□□□□ -0.28
ATG4A-202ENST00000345734 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP13.28□□□□□ -0.28
ATG4A-202ENST00000345734 ZFP91Q96JP5 570 aaPredicted RBP13.28□□□□□ -0.28
ATG4A-202ENST00000345734 VGFO15240 615 aaPredicted RBP13.27□□□□□ -0.28
ATG4A-202ENST00000345734 PLCH2O75038 1416 aa13.27□□□□□ -0.29
ATG4A-202ENST00000345734 ANKRD50Q9ULJ7 1429 aa13.27□□□□□ -0.29
ATG4A-202ENST00000345734 TONSLQ96HA7 1378 aa13.27□□□□□ -0.29
ATG4A-202ENST00000345734 WDR7Q9Y4E6 1490 aa13.27□□□□□ -0.29
ATG4A-202ENST00000345734 PPP1R15AO75807 674 aaPredicted RBP13.27□□□□□ -0.29
ATG4A-202ENST00000345734 PZPP20742 1482 aa13.26□□□□□ -0.29
ATG4A-202ENST00000345734 ACIN1Q9UKV3 1341 aaKnown RBP13.26□□□□□ -0.29
ATG4A-202ENST00000345734 ARHGEF12Q9NZN5 1544 aa13.25□□□□□ -0.29
ATG4A-202ENST00000345734 KIF15Q9NS87 1388 aa13.25□□□□□ -0.29
ATG4A-202ENST00000345734 RSPH4AQ5TD94 716 aa13.24□□□□□ -0.29
ATG4A-202ENST00000345734 DNAJC5Q9H3Z4 198 aa13.24□□□□□ -0.29
ATG4A-202ENST00000345734 KIAA1107Q9UPP5 1409 aa13.24□□□□□ -0.29
ATG4A-202ENST00000345734 PLEKHH2Q8IVE3 1493 aa13.23□□□□□ -0.29
ATG4A-202ENST00000345734 EFCAB2Q5VUJ9 269 aa13.23□□□□□ -0.29
ATG4A-202ENST00000345734 ASXL2Q76L83 1435 aa13.23□□□□□ -0.29
ATG4A-202ENST00000345734 ANKRD30BQ9BXX2 1392 aa13.22□□□□□ -0.29
ATG4A-202ENST00000345734 MAST1Q9Y2H9 1570 aa13.22□□□□□ -0.29
ATG4A-202ENST00000345734 TSPYL2Q9H2G4 693 aaPredicted RBP13.22□□□□□ -0.29
ATG4A-202ENST00000345734 ABCC1P33527 1531 aa13.21□□□□□ -0.3
ATG4A-202ENST00000345734 ABCA9Q8IUA7 1624 aa13.2□□□□□ -0.3
ATG4A-202ENST00000345734 NBR1Q14596 966 aa13.19□□□□□ -0.3
ATG4A-202ENST00000345734 ARAP3Q8WWN8 1544 aa13.19□□□□□ -0.3
ATG4A-202ENST00000345734 CHRM1P11229 460 aaPredicted RBP13.19□□□□□ -0.3
ATG4A-202ENST00000345734 NUP155O75694 1391 aa13.19□□□□□ -0.3
ATG4A-202ENST00000345734 TRAPPC8Q9Y2L5 1435 aa13.18□□□□□ -0.3
ATG4A-202ENST00000345734 PLXNC1O60486 1568 aa13.17□□□□□ -0.3
ATG4A-202ENST00000345734 RPRD2Q5VT52 1461 aaKnown RBP13.16□□□□□ -0.3
ATG4A-202ENST00000345734 KDM5DQ9BY66 1539 aa13.16□□□□□ -0.3
ATG4A-202ENST00000345734 L3MBTL2Q969R5 705 aa13.16□□□□□ -0.3
ATG4A-202ENST00000345734 FANCAO15360 1455 aa13.15□□□□□ -0.3
ATG4A-202ENST00000345734 HIRIP3Q9BW71 556 aaPredicted RBP13.15□□□□□ -0.3
ATG4A-202ENST00000345734 AFAP1Q8N556 730 aa13.14□□□□□ -0.31
ATG4A-202ENST00000345734 DUOX2Q9NRD8 1548 aa13.12□□□□□ -0.31
ATG4A-202ENST00000345734 TEX14Q8IWB6 1497 aa13.12□□□□□ -0.31
ATG4A-202ENST00000345734 UNC13BO14795 1591 aa13.12□□□□□ -0.31
ATG4A-202ENST00000345734 FAM135AQ9P2D6 1515 aa13.12□□□□□ -0.31
ATG4A-202ENST00000345734 SPAG9O60271 1321 aaKnown RBP13.11□□□□□ -0.31
ATG4A-202ENST00000345734 ZFYVE16Q7Z3T8 1539 aa13.11□□□□□ -0.31
ATG4A-202ENST00000345734 ADGRL1O94910 1474 aa13.1□□□□□ -0.31
ATG4A-202ENST00000345734 CYB5RLQ6IPT4 315 aa13.1□□□□□ -0.31
ATG4A-202ENST00000345734 RIMBP3CA6NJZ7 1639 aa13.1□□□□□ -0.31
ATG4A-202ENST00000345734 RIMBP3BA6NNM3 1639 aa13.1□□□□□ -0.31
ATG4A-202ENST00000345734 RIMBP3Q9UFD9 1639 aa13.1□□□□□ -0.31
ATG4A-202ENST00000345734 SCAPERQ9BY12 1400 aa13.09□□□□□ -0.31
ATG4A-202ENST00000345734 PCDHB8Q9UN66 801 aa13.09□□□□□ -0.31
ATG4A-202ENST00000345734 PCDHB13Q9Y5F0 798 aa13.09□□□□□ -0.31
ATG4A-202ENST00000345734 RTEL1-TNFRSF6BF6WH68 1400 aa13.08□□□□□ -0.32
ATG4A-202ENST00000345734 ERBINQ96RT1 1412 aa13.08□□□□□ -0.32
ATG4A-202ENST00000345734 FARP1Q9Y4F1 1045 aaPredicted RBP13.08□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 97.4 ms